data_2DJ5
#
_model_server_result.job_id            9BVIBRQ0ahLuZPpl-wUc0Q 
_model_server_result.datetime_utc      '2024-11-24 14:43:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dj5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":203}' 
#
_entry.id    2DJ5 
#
_exptl.entry_id    2DJ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2DJ5 
_cell.length_a            62.721 
_cell.length_b            62.721 
_cell.length_c            150.609 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DJ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1 
A,B,C,D,E,F,G,H,I,J,K 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2DJ5 
_atom_sites.fract_transf_matrix[1][1]    0.015944 
_atom_sites.fract_transf_matrix[1][2]    0.009205 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00664 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 133 4 PO4 PO4 . 
D 3 GOL A 1 201 1 GOL GOL . 
E 3 GOL A 1 202 2 GOL GOL . 
F 3 GOL A 1 203 3 GOL GOL . 
G 2 PO4 B 1 133 1 PO4 PO4 . 
H 2 PO4 B 1 134 2 PO4 PO4 . 
I 2 PO4 B 1 135 3 PO4 PO4 . 
J 4 HOH A 1 204 1 HOH HOH . 
J 4 HOH A 2 205 6 HOH HOH . 
J 4 HOH A 3 206 7 HOH HOH . 
J 4 HOH A 4 207 9 HOH HOH . 
J 4 HOH A 5 208 10 HOH HOH . 
J 4 HOH A 6 209 11 HOH HOH . 
J 4 HOH A 7 210 14 HOH HOH . 
J 4 HOH A 8 211 16 HOH HOH . 
J 4 HOH A 9 212 18 HOH HOH . 
J 4 HOH A 10 213 20 HOH HOH . 
J 4 HOH A 11 214 21 HOH HOH . 
J 4 HOH A 12 215 22 HOH HOH . 
J 4 HOH A 13 216 23 HOH HOH . 
J 4 HOH A 14 217 24 HOH HOH . 
J 4 HOH A 15 218 27 HOH HOH . 
J 4 HOH A 16 219 28 HOH HOH . 
J 4 HOH A 17 220 29 HOH HOH . 
J 4 HOH A 18 221 30 HOH HOH . 
J 4 HOH A 19 222 31 HOH HOH . 
J 4 HOH A 20 223 32 HOH HOH . 
J 4 HOH A 21 224 33 HOH HOH . 
J 4 HOH A 22 225 36 HOH HOH . 
J 4 HOH A 23 226 37 HOH HOH . 
J 4 HOH A 24 227 38 HOH HOH . 
J 4 HOH A 25 228 39 HOH HOH . 
J 4 HOH A 26 229 41 HOH HOH . 
J 4 HOH A 27 230 42 HOH HOH . 
J 4 HOH A 28 231 43 HOH HOH . 
J 4 HOH A 29 232 45 HOH HOH . 
J 4 HOH A 30 233 46 HOH HOH . 
J 4 HOH A 31 234 49 HOH HOH . 
J 4 HOH A 32 235 50 HOH HOH . 
J 4 HOH A 33 236 51 HOH HOH . 
K 4 HOH B 1 136 2 HOH HOH . 
K 4 HOH B 2 137 3 HOH HOH . 
K 4 HOH B 3 138 4 HOH HOH . 
K 4 HOH B 4 139 5 HOH HOH . 
K 4 HOH B 5 140 8 HOH HOH . 
K 4 HOH B 6 141 12 HOH HOH . 
K 4 HOH B 7 142 13 HOH HOH . 
K 4 HOH B 8 143 15 HOH HOH . 
K 4 HOH B 9 144 17 HOH HOH . 
K 4 HOH B 10 145 19 HOH HOH . 
K 4 HOH B 11 146 25 HOH HOH . 
K 4 HOH B 12 147 26 HOH HOH . 
K 4 HOH B 13 148 34 HOH HOH . 
K 4 HOH B 14 149 35 HOH HOH . 
K 4 HOH B 15 150 40 HOH HOH . 
K 4 HOH B 16 151 44 HOH HOH . 
K 4 HOH B 17 152 47 HOH HOH . 
K 4 HOH B 18 153 48 HOH HOH . 
K 4 HOH B 19 154 52 HOH HOH . 
K 4 HOH B 20 155 53 HOH HOH . 
K 4 HOH B 21 156 54 HOH HOH . 
K 4 HOH B 22 157 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 31.156 60.503 1.74 1 126.33 ? C1 GOL 203 A 1 
HETATM 2 O O1 GOL . . . F 3 30.644 59.19 1.828 1 136.32 ? O1 GOL 203 A 1 
HETATM 3 C C2 GOL . . . F 3 32.637 60.556 2.135 1 116.84 ? C2 GOL 203 A 1 
HETATM 4 O O2 GOL . . . F 3 32.714 61.286 3.342 1 71.13 ? O2 GOL 203 A 1 
HETATM 5 C C3 GOL . . . F 3 33.461 61.213 1.012 1 97.61 ? C3 GOL 203 A 1 
HETATM 6 O O3 GOL . . . F 3 34.844 61.323 1.294 1 59.42 ? O3 GOL 203 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#