data_2DJ5 # _model_server_result.job_id nEJH423tzCJIOoU8-Bu3RA _model_server_result.datetime_utc '2024-11-05 00:40:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 2DJ5 # _exptl.entry_id 2DJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DJ5 _cell.length_a 62.721 _cell.length_b 62.721 _cell.length_c 150.609 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2DJ5 _atom_sites.fract_transf_matrix[1][1] 0.015944 _atom_sites.fract_transf_matrix[1][2] 0.009205 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 133 4 PO4 PO4 . D 3 GOL A 1 201 1 GOL GOL . E 3 GOL A 1 202 2 GOL GOL . F 3 GOL A 1 203 3 GOL GOL . G 2 PO4 B 1 133 1 PO4 PO4 . H 2 PO4 B 1 134 2 PO4 PO4 . I 2 PO4 B 1 135 3 PO4 PO4 . J 4 HOH A 1 204 1 HOH HOH . J 4 HOH A 2 205 6 HOH HOH . J 4 HOH A 3 206 7 HOH HOH . J 4 HOH A 4 207 9 HOH HOH . J 4 HOH A 5 208 10 HOH HOH . J 4 HOH A 6 209 11 HOH HOH . J 4 HOH A 7 210 14 HOH HOH . J 4 HOH A 8 211 16 HOH HOH . J 4 HOH A 9 212 18 HOH HOH . J 4 HOH A 10 213 20 HOH HOH . J 4 HOH A 11 214 21 HOH HOH . J 4 HOH A 12 215 22 HOH HOH . J 4 HOH A 13 216 23 HOH HOH . J 4 HOH A 14 217 24 HOH HOH . J 4 HOH A 15 218 27 HOH HOH . J 4 HOH A 16 219 28 HOH HOH . J 4 HOH A 17 220 29 HOH HOH . J 4 HOH A 18 221 30 HOH HOH . J 4 HOH A 19 222 31 HOH HOH . J 4 HOH A 20 223 32 HOH HOH . J 4 HOH A 21 224 33 HOH HOH . J 4 HOH A 22 225 36 HOH HOH . J 4 HOH A 23 226 37 HOH HOH . J 4 HOH A 24 227 38 HOH HOH . J 4 HOH A 25 228 39 HOH HOH . J 4 HOH A 26 229 41 HOH HOH . J 4 HOH A 27 230 42 HOH HOH . J 4 HOH A 28 231 43 HOH HOH . J 4 HOH A 29 232 45 HOH HOH . J 4 HOH A 30 233 46 HOH HOH . J 4 HOH A 31 234 49 HOH HOH . J 4 HOH A 32 235 50 HOH HOH . J 4 HOH A 33 236 51 HOH HOH . K 4 HOH B 1 136 2 HOH HOH . K 4 HOH B 2 137 3 HOH HOH . K 4 HOH B 3 138 4 HOH HOH . K 4 HOH B 4 139 5 HOH HOH . K 4 HOH B 5 140 8 HOH HOH . K 4 HOH B 6 141 12 HOH HOH . K 4 HOH B 7 142 13 HOH HOH . K 4 HOH B 8 143 15 HOH HOH . K 4 HOH B 9 144 17 HOH HOH . K 4 HOH B 10 145 19 HOH HOH . K 4 HOH B 11 146 25 HOH HOH . K 4 HOH B 12 147 26 HOH HOH . K 4 HOH B 13 148 34 HOH HOH . K 4 HOH B 14 149 35 HOH HOH . K 4 HOH B 15 150 40 HOH HOH . K 4 HOH B 16 151 44 HOH HOH . K 4 HOH B 17 152 47 HOH HOH . K 4 HOH B 18 153 48 HOH HOH . K 4 HOH B 19 154 52 HOH HOH . K 4 HOH B 20 155 53 HOH HOH . K 4 HOH B 21 156 54 HOH HOH . K 4 HOH B 22 157 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 31.156 60.503 1.74 1 126.33 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . F 3 30.644 59.19 1.828 1 136.32 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . F 3 32.637 60.556 2.135 1 116.84 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . F 3 32.714 61.286 3.342 1 71.13 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . F 3 33.461 61.213 1.012 1 97.61 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . F 3 34.844 61.323 1.294 1 59.42 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #