data_2DJG # _model_server_result.job_id 2tvgH4q80yRxQVTK-fqasw _model_server_result.datetime_utc '2024-12-21 11:55:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2djg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 2DJG # _exptl.entry_id 2DJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DJG _cell.length_a 87.479 _cell.length_b 88.68 _cell.length_c 114.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 87.479 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 87.479 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 I N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 4 5 4 BMA BMA C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG ? 602 NAG 4 n D NAG 2 D 2 NAG ? 605 NAG 4 n D BMA 3 D 3 BMA ? 606 BMA 4 n D BMA 4 D 4 BMA ? 607 BMA 4 n D BMA 5 D 5 BMA ? 608 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 112 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf3 B SG CYS 25 B CYS 231 1_555 B SG CYS 68 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf4 B SG CYS 61 B CYS 267 1_555 B SG CYS 101 B CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf5 B SG CYS 91 B CYS 297 1_555 B SG CYS 107 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 5 A ASN 5 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? covale ? covale2 A ND2 ASN 95 A ASN 95 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale3 B ND2 ASN 46 B ASN 252 1_555 G C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 D O3 BMA . D BMA 3 1_555 D C1 BMA . D BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale7 D O2 BMA . D BMA 4 1_555 D C1 BMA . D BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 344 n n S O2 SO4 doub 345 n n S O3 SO4 sing 346 n n S O4 SO4 sing 347 n n # _atom_sites.entry_id 2DJG _atom_sites.fract_transf_matrix[1][1] 0.011431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 504 504 NAG NAG . F 6 SO4 A 1 503 503 SO4 SO4 . G 5 NAG B 1 604 604 NAG NAG . H 7 CL B 1 500 500 CL CL . I 6 SO4 C 1 501 501 SO4 SO4 . J 8 HOH A 1 609 4 HOH HOH . J 8 HOH A 2 610 5 HOH HOH . J 8 HOH A 3 611 7 HOH HOH . J 8 HOH A 4 612 10 HOH HOH . J 8 HOH A 5 613 14 HOH HOH . J 8 HOH A 6 614 16 HOH HOH . J 8 HOH A 7 615 18 HOH HOH . J 8 HOH A 8 616 25 HOH HOH . J 8 HOH A 9 617 31 HOH HOH . J 8 HOH A 10 618 35 HOH HOH . J 8 HOH A 11 619 39 HOH HOH . J 8 HOH A 12 620 40 HOH HOH . J 8 HOH A 13 621 42 HOH HOH . J 8 HOH A 14 622 43 HOH HOH . J 8 HOH A 15 623 44 HOH HOH . J 8 HOH A 16 624 45 HOH HOH . J 8 HOH A 17 625 46 HOH HOH . J 8 HOH A 18 626 48 HOH HOH . J 8 HOH A 19 627 50 HOH HOH . J 8 HOH A 20 628 52 HOH HOH . J 8 HOH A 21 629 62 HOH HOH . J 8 HOH A 22 630 63 HOH HOH . J 8 HOH A 23 631 74 HOH HOH . J 8 HOH A 24 632 80 HOH HOH . J 8 HOH A 25 633 81 HOH HOH . J 8 HOH A 26 634 83 HOH HOH . J 8 HOH A 27 635 85 HOH HOH . J 8 HOH A 28 636 88 HOH HOH . J 8 HOH A 29 637 95 HOH HOH . J 8 HOH A 30 638 99 HOH HOH . J 8 HOH A 31 639 103 HOH HOH . J 8 HOH A 32 640 104 HOH HOH . J 8 HOH A 33 641 109 HOH HOH . J 8 HOH A 34 642 115 HOH HOH . J 8 HOH A 35 643 116 HOH HOH . J 8 HOH A 36 644 117 HOH HOH . J 8 HOH A 37 645 130 HOH HOH . J 8 HOH A 38 646 133 HOH HOH . J 8 HOH A 39 647 135 HOH HOH . J 8 HOH A 40 648 137 HOH HOH . J 8 HOH A 41 649 143 HOH HOH . J 8 HOH A 42 650 147 HOH HOH . J 8 HOH A 43 651 149 HOH HOH . J 8 HOH A 44 652 150 HOH HOH . J 8 HOH A 45 653 155 HOH HOH . J 8 HOH A 46 654 160 HOH HOH . J 8 HOH A 47 655 163 HOH HOH . J 8 HOH A 48 656 164 HOH HOH . J 8 HOH A 49 657 170 HOH HOH . J 8 HOH A 50 658 175 HOH HOH . J 8 HOH A 51 659 176 HOH HOH . J 8 HOH A 52 660 181 HOH HOH . J 8 HOH A 53 661 186 HOH HOH . J 8 HOH A 54 662 188 HOH HOH . J 8 HOH A 55 663 193 HOH HOH . J 8 HOH A 56 664 195 HOH HOH . J 8 HOH A 57 665 203 HOH HOH . J 8 HOH A 58 666 204 HOH HOH . J 8 HOH A 59 667 211 HOH HOH . J 8 HOH A 60 668 213 HOH HOH . J 8 HOH A 61 669 220 HOH HOH . J 8 HOH A 62 670 221 HOH HOH . J 8 HOH A 63 671 223 HOH HOH . J 8 HOH A 64 672 226 HOH HOH . J 8 HOH A 65 673 227 HOH HOH . J 8 HOH A 66 674 229 HOH HOH . J 8 HOH A 67 675 230 HOH HOH . J 8 HOH A 68 676 236 HOH HOH . K 8 HOH B 1 605 1 HOH HOH . K 8 HOH B 2 606 2 HOH HOH . K 8 HOH B 3 607 3 HOH HOH . K 8 HOH B 4 608 6 HOH HOH . K 8 HOH B 5 609 8 HOH HOH . K 8 HOH B 6 610 11 HOH HOH . K 8 HOH B 7 611 12 HOH HOH . K 8 HOH B 8 612 13 HOH HOH . K 8 HOH B 9 613 17 HOH HOH . K 8 HOH B 10 614 19 HOH HOH . K 8 HOH B 11 615 20 HOH HOH . K 8 HOH B 12 616 21 HOH HOH . K 8 HOH B 13 617 22 HOH HOH . K 8 HOH B 14 618 26 HOH HOH . K 8 HOH B 15 619 27 HOH HOH . K 8 HOH B 16 620 29 HOH HOH . K 8 HOH B 17 621 30 HOH HOH . K 8 HOH B 18 622 34 HOH HOH . K 8 HOH B 19 623 37 HOH HOH . K 8 HOH B 20 624 38 HOH HOH . K 8 HOH B 21 625 41 HOH HOH . K 8 HOH B 22 626 47 HOH HOH . K 8 HOH B 23 627 49 HOH HOH . K 8 HOH B 24 628 51 HOH HOH . K 8 HOH B 25 629 53 HOH HOH . K 8 HOH B 26 630 54 HOH HOH . K 8 HOH B 27 631 55 HOH HOH . K 8 HOH B 28 632 56 HOH HOH . K 8 HOH B 29 633 57 HOH HOH . K 8 HOH B 30 634 58 HOH HOH . K 8 HOH B 31 635 59 HOH HOH . K 8 HOH B 32 636 61 HOH HOH . K 8 HOH B 33 637 64 HOH HOH . K 8 HOH B 34 638 65 HOH HOH . K 8 HOH B 35 639 67 HOH HOH . K 8 HOH B 36 640 69 HOH HOH . K 8 HOH B 37 641 71 HOH HOH . K 8 HOH B 38 642 72 HOH HOH . K 8 HOH B 39 643 73 HOH HOH . K 8 HOH B 40 644 75 HOH HOH . K 8 HOH B 41 645 76 HOH HOH . K 8 HOH B 42 646 77 HOH HOH . K 8 HOH B 43 647 78 HOH HOH . K 8 HOH B 44 648 79 HOH HOH . K 8 HOH B 45 649 82 HOH HOH . K 8 HOH B 46 650 89 HOH HOH . K 8 HOH B 47 651 90 HOH HOH . K 8 HOH B 48 652 91 HOH HOH . K 8 HOH B 49 653 97 HOH HOH . K 8 HOH B 50 654 98 HOH HOH . K 8 HOH B 51 655 101 HOH HOH . K 8 HOH B 52 656 105 HOH HOH . K 8 HOH B 53 657 107 HOH HOH . K 8 HOH B 54 658 108 HOH HOH . K 8 HOH B 55 659 111 HOH HOH . K 8 HOH B 56 660 112 HOH HOH . K 8 HOH B 57 661 113 HOH HOH . K 8 HOH B 58 662 114 HOH HOH . K 8 HOH B 59 663 118 HOH HOH . K 8 HOH B 60 664 120 HOH HOH . K 8 HOH B 61 665 121 HOH HOH . K 8 HOH B 62 666 122 HOH HOH . K 8 HOH B 63 667 126 HOH HOH . K 8 HOH B 64 668 128 HOH HOH . K 8 HOH B 65 669 131 HOH HOH . K 8 HOH B 66 670 132 HOH HOH . K 8 HOH B 67 671 136 HOH HOH . K 8 HOH B 68 672 139 HOH HOH . K 8 HOH B 69 673 140 HOH HOH . K 8 HOH B 70 674 141 HOH HOH . K 8 HOH B 71 675 142 HOH HOH . K 8 HOH B 72 676 146 HOH HOH . K 8 HOH B 73 677 148 HOH HOH . K 8 HOH B 74 678 153 HOH HOH . K 8 HOH B 75 679 165 HOH HOH . K 8 HOH B 76 680 169 HOH HOH . K 8 HOH B 77 681 171 HOH HOH . K 8 HOH B 78 682 172 HOH HOH . K 8 HOH B 79 683 174 HOH HOH . K 8 HOH B 80 684 178 HOH HOH . K 8 HOH B 81 685 180 HOH HOH . K 8 HOH B 82 686 183 HOH HOH . K 8 HOH B 83 687 184 HOH HOH . K 8 HOH B 84 688 191 HOH HOH . K 8 HOH B 85 689 192 HOH HOH . K 8 HOH B 86 690 194 HOH HOH . K 8 HOH B 87 691 197 HOH HOH . K 8 HOH B 88 692 199 HOH HOH . K 8 HOH B 89 693 202 HOH HOH . K 8 HOH B 90 694 206 HOH HOH . K 8 HOH B 91 695 207 HOH HOH . K 8 HOH B 92 696 209 HOH HOH . K 8 HOH B 93 697 212 HOH HOH . K 8 HOH B 94 698 214 HOH HOH . K 8 HOH B 95 699 215 HOH HOH . K 8 HOH B 96 700 218 HOH HOH . K 8 HOH B 97 701 219 HOH HOH . K 8 HOH B 98 702 222 HOH HOH . K 8 HOH B 99 703 224 HOH HOH . K 8 HOH B 100 704 228 HOH HOH . K 8 HOH B 101 705 231 HOH HOH . K 8 HOH B 102 706 232 HOH HOH . K 8 HOH B 103 707 234 HOH HOH . K 8 HOH B 104 708 235 HOH HOH . L 8 HOH C 1 15 15 HOH HOH . L 8 HOH C 2 23 23 HOH HOH . L 8 HOH C 3 24 24 HOH HOH . L 8 HOH C 4 28 28 HOH HOH . L 8 HOH C 5 32 32 HOH HOH . L 8 HOH C 6 33 33 HOH HOH . L 8 HOH C 7 36 36 HOH HOH . L 8 HOH C 8 60 60 HOH HOH . L 8 HOH C 9 84 84 HOH HOH . L 8 HOH C 10 87 87 HOH HOH . L 8 HOH C 11 93 93 HOH HOH . L 8 HOH C 12 94 94 HOH HOH . L 8 HOH C 13 96 96 HOH HOH . L 8 HOH C 14 102 102 HOH HOH . L 8 HOH C 15 119 119 HOH HOH . L 8 HOH C 16 124 124 HOH HOH . L 8 HOH C 17 127 127 HOH HOH . L 8 HOH C 18 129 129 HOH HOH . L 8 HOH C 19 134 134 HOH HOH . L 8 HOH C 20 138 138 HOH HOH . L 8 HOH C 21 144 144 HOH HOH . L 8 HOH C 22 145 145 HOH HOH . L 8 HOH C 23 166 166 HOH HOH . L 8 HOH C 24 167 167 HOH HOH . L 8 HOH C 25 168 168 HOH HOH . L 8 HOH C 26 185 185 HOH HOH . L 8 HOH C 27 187 187 HOH HOH . L 8 HOH C 28 189 189 HOH HOH . L 8 HOH C 29 190 190 HOH HOH . L 8 HOH C 30 196 196 HOH HOH . L 8 HOH C 31 198 198 HOH HOH . L 8 HOH C 32 200 200 HOH HOH . L 8 HOH C 33 205 205 HOH HOH . L 8 HOH C 34 208 208 HOH HOH . L 8 HOH C 35 216 216 HOH HOH . L 8 HOH C 36 217 217 HOH HOH . L 8 HOH C 37 225 225 HOH HOH . L 8 HOH C 38 233 233 HOH HOH . L 8 HOH C 39 237 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 6 55.462 7.056 26.059 1 72.13 ? S SO4 503 A 1 HETATM 2 O O1 SO4 . . . F 6 56.399 6.056 25.411 1 66.84 ? O1 SO4 503 A 1 HETATM 3 O O2 SO4 . . . F 6 54.753 6.577 27.277 1 64.78 ? O2 SO4 503 A 1 HETATM 4 O O3 SO4 . . . F 6 56.304 8.264 26.311 1 65.52 ? O3 SO4 503 A 1 HETATM 5 O O4 SO4 . . . F 6 54.293 7.385 25.218 1 70.25 ? O4 SO4 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 5 #