data_2DKK # _model_server_result.job_id kuVwrWkdvtEtad54C8WZwQ _model_server_result.datetime_utc '2024-11-04 23:01:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":431}' # _entry.id 2DKK # _exptl.entry_id 2DKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.44 _cell.angle_gamma 90 _cell.entry_id 2DKK _cell.length_a 103.968 _cell.length_b 44.352 _cell.length_c 102.107 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 356 A CYS 356 1_555 B FE HEM . A HEM 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc2 B FE HEM . A HEM 430 1_555 C N1 IMD . A IMD 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 255 n y N1 C5 IMD sing 256 n y N1 HN1 IMD sing 257 n n C2 N3 IMD doub 258 n y C2 H2 IMD sing 259 n n N3 C4 IMD sing 260 n y N3 HN3 IMD sing 261 n n C4 C5 IMD doub 262 n y C4 H4 IMD sing 263 n n C5 H5 IMD sing 264 n n # _atom_sites.entry_id 2DKK _atom_sites.fract_transf_matrix[1][1] 0.009618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004372 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 430 430 HEM HEM . C 3 IMD A 1 431 431 IMD IMD . D 3 IMD A 1 432 432 IMD IMD . E 4 HOH A 1 500 500 HOH TIP . E 4 HOH A 2 501 501 HOH TIP . E 4 HOH A 3 502 502 HOH TIP . E 4 HOH A 4 503 503 HOH TIP . E 4 HOH A 5 504 504 HOH TIP . E 4 HOH A 6 505 505 HOH TIP . E 4 HOH A 7 506 506 HOH TIP . E 4 HOH A 8 507 507 HOH TIP . E 4 HOH A 9 508 508 HOH TIP . E 4 HOH A 10 509 509 HOH TIP . E 4 HOH A 11 510 510 HOH TIP . E 4 HOH A 12 511 511 HOH TIP . E 4 HOH A 13 512 512 HOH TIP . E 4 HOH A 14 513 513 HOH TIP . E 4 HOH A 15 514 514 HOH TIP . E 4 HOH A 16 515 515 HOH TIP . E 4 HOH A 17 516 516 HOH TIP . E 4 HOH A 18 517 517 HOH TIP . E 4 HOH A 19 518 518 HOH TIP . E 4 HOH A 20 519 519 HOH TIP . E 4 HOH A 21 520 520 HOH TIP . E 4 HOH A 22 521 521 HOH TIP . E 4 HOH A 23 522 522 HOH TIP . E 4 HOH A 24 523 523 HOH TIP . E 4 HOH A 25 524 524 HOH TIP . E 4 HOH A 26 525 525 HOH TIP . E 4 HOH A 27 526 526 HOH TIP . E 4 HOH A 28 527 527 HOH TIP . E 4 HOH A 29 528 528 HOH TIP . E 4 HOH A 30 529 529 HOH TIP . E 4 HOH A 31 530 530 HOH TIP . E 4 HOH A 32 531 531 HOH TIP . E 4 HOH A 33 532 532 HOH TIP . E 4 HOH A 34 533 533 HOH TIP . E 4 HOH A 35 534 534 HOH TIP . E 4 HOH A 36 535 535 HOH TIP . E 4 HOH A 37 536 536 HOH TIP . E 4 HOH A 38 537 537 HOH TIP . E 4 HOH A 39 538 538 HOH TIP . E 4 HOH A 40 539 539 HOH TIP . E 4 HOH A 41 540 540 HOH TIP . E 4 HOH A 42 541 541 HOH TIP . E 4 HOH A 43 542 542 HOH TIP . E 4 HOH A 44 543 543 HOH TIP . E 4 HOH A 45 544 544 HOH TIP . E 4 HOH A 46 545 545 HOH TIP . E 4 HOH A 47 546 546 HOH TIP . E 4 HOH A 48 547 547 HOH TIP . E 4 HOH A 49 548 548 HOH TIP . E 4 HOH A 50 549 549 HOH TIP . E 4 HOH A 51 550 550 HOH TIP . E 4 HOH A 52 551 551 HOH TIP . E 4 HOH A 53 552 552 HOH TIP . E 4 HOH A 54 553 553 HOH TIP . E 4 HOH A 55 554 554 HOH TIP . E 4 HOH A 56 555 555 HOH TIP . E 4 HOH A 57 556 556 HOH TIP . E 4 HOH A 58 557 557 HOH TIP . E 4 HOH A 59 558 558 HOH TIP . E 4 HOH A 60 559 559 HOH TIP . E 4 HOH A 61 560 560 HOH TIP . E 4 HOH A 62 561 561 HOH TIP . E 4 HOH A 63 562 562 HOH TIP . E 4 HOH A 64 563 563 HOH TIP . E 4 HOH A 65 564 564 HOH TIP . E 4 HOH A 66 565 565 HOH TIP . E 4 HOH A 67 566 566 HOH TIP . E 4 HOH A 68 567 567 HOH TIP . E 4 HOH A 69 568 568 HOH TIP . E 4 HOH A 70 569 569 HOH TIP . E 4 HOH A 71 570 570 HOH TIP . E 4 HOH A 72 571 571 HOH TIP . E 4 HOH A 73 572 572 HOH TIP . E 4 HOH A 74 573 573 HOH TIP . E 4 HOH A 75 574 574 HOH TIP . E 4 HOH A 76 575 575 HOH TIP . E 4 HOH A 77 576 576 HOH TIP . E 4 HOH A 78 577 577 HOH TIP . E 4 HOH A 79 578 578 HOH TIP . E 4 HOH A 80 579 579 HOH TIP . E 4 HOH A 81 580 580 HOH TIP . E 4 HOH A 82 581 581 HOH TIP . E 4 HOH A 83 582 582 HOH TIP . E 4 HOH A 84 583 583 HOH TIP . E 4 HOH A 85 584 584 HOH TIP . E 4 HOH A 86 585 585 HOH TIP . E 4 HOH A 87 586 586 HOH TIP . E 4 HOH A 88 587 587 HOH TIP . E 4 HOH A 89 588 588 HOH TIP . E 4 HOH A 90 589 589 HOH TIP . E 4 HOH A 91 590 590 HOH TIP . E 4 HOH A 92 591 591 HOH TIP . E 4 HOH A 93 592 592 HOH TIP . E 4 HOH A 94 593 593 HOH TIP . E 4 HOH A 95 594 594 HOH TIP . E 4 HOH A 96 595 595 HOH TIP . E 4 HOH A 97 596 596 HOH TIP . E 4 HOH A 98 597 597 HOH TIP . E 4 HOH A 99 598 598 HOH TIP . E 4 HOH A 100 599 599 HOH TIP . E 4 HOH A 101 600 600 HOH TIP . E 4 HOH A 102 601 601 HOH TIP . E 4 HOH A 103 602 602 HOH TIP . E 4 HOH A 104 603 603 HOH TIP . E 4 HOH A 105 604 604 HOH TIP . E 4 HOH A 106 605 605 HOH TIP . E 4 HOH A 107 606 606 HOH TIP . E 4 HOH A 108 607 607 HOH TIP . E 4 HOH A 109 608 608 HOH TIP . E 4 HOH A 110 609 609 HOH TIP . E 4 HOH A 111 610 610 HOH TIP . E 4 HOH A 112 611 611 HOH TIP . E 4 HOH A 113 612 612 HOH TIP . E 4 HOH A 114 613 613 HOH TIP . E 4 HOH A 115 614 614 HOH TIP . E 4 HOH A 116 615 615 HOH TIP . E 4 HOH A 117 616 616 HOH TIP . E 4 HOH A 118 617 617 HOH TIP . E 4 HOH A 119 618 618 HOH TIP . E 4 HOH A 120 619 619 HOH TIP . E 4 HOH A 121 620 620 HOH TIP . E 4 HOH A 122 621 621 HOH TIP . E 4 HOH A 123 622 622 HOH TIP . E 4 HOH A 124 623 623 HOH TIP . E 4 HOH A 125 624 624 HOH TIP . E 4 HOH A 126 625 625 HOH TIP . E 4 HOH A 127 626 626 HOH TIP . E 4 HOH A 128 627 627 HOH TIP . E 4 HOH A 129 628 628 HOH TIP . E 4 HOH A 130 629 629 HOH TIP . E 4 HOH A 131 630 630 HOH TIP . E 4 HOH A 132 631 631 HOH TIP . E 4 HOH A 133 632 632 HOH TIP . E 4 HOH A 134 633 633 HOH TIP . E 4 HOH A 135 634 634 HOH TIP . E 4 HOH A 136 635 635 HOH TIP . E 4 HOH A 137 636 636 HOH TIP . E 4 HOH A 138 637 637 HOH TIP . E 4 HOH A 139 638 638 HOH TIP . E 4 HOH A 140 639 639 HOH TIP . E 4 HOH A 141 640 640 HOH TIP . E 4 HOH A 142 641 641 HOH TIP . E 4 HOH A 143 642 642 HOH TIP . E 4 HOH A 144 643 643 HOH TIP . E 4 HOH A 145 644 644 HOH TIP . E 4 HOH A 146 645 645 HOH TIP . E 4 HOH A 147 646 646 HOH TIP . E 4 HOH A 148 647 647 HOH TIP . E 4 HOH A 149 648 648 HOH TIP . E 4 HOH A 150 649 649 HOH TIP . E 4 HOH A 151 650 650 HOH TIP . E 4 HOH A 152 651 651 HOH TIP . E 4 HOH A 153 652 652 HOH TIP . E 4 HOH A 154 653 653 HOH TIP . E 4 HOH A 155 654 654 HOH TIP . E 4 HOH A 156 655 655 HOH TIP . E 4 HOH A 157 656 656 HOH TIP . E 4 HOH A 158 657 657 HOH TIP . E 4 HOH A 159 658 658 HOH TIP . E 4 HOH A 160 659 659 HOH TIP . E 4 HOH A 161 660 660 HOH TIP . E 4 HOH A 162 661 661 HOH TIP . E 4 HOH A 163 662 662 HOH TIP . E 4 HOH A 164 663 663 HOH TIP . E 4 HOH A 165 664 664 HOH TIP . E 4 HOH A 166 665 665 HOH TIP . E 4 HOH A 167 666 666 HOH TIP . E 4 HOH A 168 667 667 HOH TIP . E 4 HOH A 169 668 668 HOH TIP . E 4 HOH A 170 669 669 HOH TIP . E 4 HOH A 171 670 670 HOH TIP . E 4 HOH A 172 671 671 HOH TIP . E 4 HOH A 173 672 672 HOH TIP . E 4 HOH A 174 673 673 HOH TIP . E 4 HOH A 175 674 674 HOH TIP . E 4 HOH A 176 675 675 HOH TIP . E 4 HOH A 177 676 676 HOH TIP . E 4 HOH A 178 677 677 HOH TIP . E 4 HOH A 179 678 678 HOH TIP . E 4 HOH A 180 679 679 HOH TIP . E 4 HOH A 181 680 680 HOH TIP . E 4 HOH A 182 681 681 HOH TIP . E 4 HOH A 183 682 682 HOH TIP . E 4 HOH A 184 683 683 HOH TIP . E 4 HOH A 185 684 684 HOH TIP . E 4 HOH A 186 685 685 HOH TIP . E 4 HOH A 187 686 686 HOH TIP . E 4 HOH A 188 687 687 HOH TIP . E 4 HOH A 189 688 688 HOH TIP . E 4 HOH A 190 689 689 HOH TIP . E 4 HOH A 191 690 690 HOH TIP . E 4 HOH A 192 691 691 HOH TIP . E 4 HOH A 193 692 692 HOH TIP . E 4 HOH A 194 693 693 HOH TIP . E 4 HOH A 195 694 694 HOH TIP . E 4 HOH A 196 695 695 HOH TIP . E 4 HOH A 197 696 696 HOH TIP . E 4 HOH A 198 697 697 HOH TIP . E 4 HOH A 199 698 698 HOH TIP . E 4 HOH A 200 699 699 HOH TIP . E 4 HOH A 201 700 700 HOH TIP . E 4 HOH A 202 701 701 HOH TIP . E 4 HOH A 203 702 702 HOH TIP . E 4 HOH A 204 703 703 HOH TIP . E 4 HOH A 205 704 704 HOH TIP . E 4 HOH A 206 705 705 HOH TIP . E 4 HOH A 207 706 706 HOH TIP . E 4 HOH A 208 707 707 HOH TIP . E 4 HOH A 209 708 708 HOH TIP . E 4 HOH A 210 709 709 HOH TIP . E 4 HOH A 211 710 710 HOH TIP . E 4 HOH A 212 711 711 HOH TIP . E 4 HOH A 213 712 712 HOH TIP . E 4 HOH A 214 713 713 HOH TIP . E 4 HOH A 215 714 714 HOH TIP . E 4 HOH A 216 715 715 HOH TIP . E 4 HOH A 217 716 716 HOH TIP . E 4 HOH A 218 717 717 HOH TIP . E 4 HOH A 219 718 718 HOH TIP . E 4 HOH A 220 719 719 HOH TIP . E 4 HOH A 221 720 720 HOH TIP . E 4 HOH A 222 721 721 HOH TIP . E 4 HOH A 223 722 722 HOH TIP . E 4 HOH A 224 723 723 HOH TIP . E 4 HOH A 225 724 724 HOH TIP . E 4 HOH A 226 725 725 HOH TIP . E 4 HOH A 227 726 726 HOH TIP . E 4 HOH A 228 727 727 HOH TIP . E 4 HOH A 229 728 728 HOH TIP . E 4 HOH A 230 729 729 HOH TIP . E 4 HOH A 231 730 730 HOH TIP . E 4 HOH A 232 731 731 HOH TIP . E 4 HOH A 233 732 732 HOH TIP . E 4 HOH A 234 733 733 HOH TIP . E 4 HOH A 235 734 734 HOH TIP . E 4 HOH A 236 735 735 HOH TIP . E 4 HOH A 237 736 736 HOH TIP . E 4 HOH A 238 737 737 HOH TIP . E 4 HOH A 239 738 738 HOH TIP . E 4 HOH A 240 739 739 HOH TIP . E 4 HOH A 241 740 740 HOH TIP . E 4 HOH A 242 741 741 HOH TIP . E 4 HOH A 243 742 742 HOH TIP . E 4 HOH A 244 743 743 HOH TIP . E 4 HOH A 245 744 744 HOH TIP . E 4 HOH A 246 745 745 HOH TIP . E 4 HOH A 247 746 746 HOH TIP . E 4 HOH A 248 747 747 HOH TIP . E 4 HOH A 249 748 748 HOH TIP . E 4 HOH A 250 749 749 HOH TIP . E 4 HOH A 251 750 750 HOH TIP . E 4 HOH A 252 751 751 HOH TIP . E 4 HOH A 253 752 752 HOH TIP . E 4 HOH A 254 753 753 HOH TIP . E 4 HOH A 255 754 754 HOH TIP . E 4 HOH A 256 755 755 HOH TIP . E 4 HOH A 257 756 756 HOH TIP . E 4 HOH A 258 757 757 HOH TIP . E 4 HOH A 259 758 758 HOH TIP . E 4 HOH A 260 759 759 HOH TIP . E 4 HOH A 261 760 760 HOH TIP . E 4 HOH A 262 761 761 HOH TIP . E 4 HOH A 263 762 762 HOH TIP . E 4 HOH A 264 763 763 HOH TIP . E 4 HOH A 265 764 764 HOH TIP . E 4 HOH A 266 765 765 HOH TIP . E 4 HOH A 267 766 766 HOH TIP . E 4 HOH A 268 767 767 HOH TIP . E 4 HOH A 269 768 768 HOH TIP . E 4 HOH A 270 769 769 HOH TIP . E 4 HOH A 271 770 770 HOH TIP . E 4 HOH A 272 771 771 HOH TIP . E 4 HOH A 273 772 772 HOH TIP . E 4 HOH A 274 773 773 HOH TIP . E 4 HOH A 275 774 774 HOH TIP . E 4 HOH A 276 775 775 HOH TIP . E 4 HOH A 277 776 776 HOH TIP . E 4 HOH A 278 777 777 HOH TIP . E 4 HOH A 279 778 778 HOH TIP . E 4 HOH A 280 779 779 HOH TIP . E 4 HOH A 281 780 780 HOH TIP . E 4 HOH A 282 781 781 HOH TIP . E 4 HOH A 283 782 782 HOH TIP . E 4 HOH A 284 783 783 HOH TIP . E 4 HOH A 285 784 784 HOH TIP . E 4 HOH A 286 785 785 HOH TIP . E 4 HOH A 287 786 786 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 3 60.652 92.533 20.645 1 32.15 ? N1 IMD 431 A 1 HETATM 2 C C2 IMD . . . C 3 60.105 92.905 19.5 1 32.98 ? C2 IMD 431 A 1 HETATM 3 N N3 IMD . . . C 3 59.439 94.031 19.695 1 33.87 ? N3 IMD 431 A 1 HETATM 4 C C4 IMD . . . C 3 59.564 94.38 20.991 1 33.52 ? C4 IMD 431 A 1 HETATM 5 C C5 IMD . . . C 3 60.322 93.443 21.585 1 32.82 ? C5 IMD 431 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #