data_2DLD
#
_model_server_result.job_id            iUerf5VQaVP4ZwJv0X8qLA 
_model_server_result.datetime_utc      '2024-11-28 00:53:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dld 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    2DLD 
#
_exptl.entry_id    2DLD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.2 
_cell.angle_gamma         90 
_cell.entry_id            2DLD 
_cell.length_a            86.2 
_cell.length_b            62.1 
_cell.length_c            77.4 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DLD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OD1 ASP 176 A ASP 176 1_555 C N3A NAI . A NAI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
covale ? covale2 E C5N NAI . B NAI 401 1_555 F N1 OXM . B OXM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 235 n n 
PA O2A NAI sing 236 n n 
PA O5B NAI sing 237 n n 
PA O3 NAI sing 238 n n 
O2A HOA2 NAI sing 239 n n 
O5B C5B NAI sing 240 n n 
C5B C4B NAI sing 241 n n 
C5B H51A NAI sing 242 n n 
C5B H52A NAI sing 243 n n 
C4B O4B NAI sing 244 n n 
C4B C3B NAI sing 245 n n 
C4B H4B NAI sing 246 n n 
O4B C1B NAI sing 247 n n 
C3B O3B NAI sing 248 n n 
C3B C2B NAI sing 249 n n 
C3B H3B NAI sing 250 n n 
O3B HO3A NAI sing 251 n n 
C2B O2B NAI sing 252 n n 
C2B C1B NAI sing 253 n n 
C2B H2B NAI sing 254 n n 
O2B HO2A NAI sing 255 n n 
C1B N9A NAI sing 256 n n 
C1B H1B NAI sing 257 n n 
N9A C8A NAI sing 258 n y 
N9A C4A NAI sing 259 n y 
C8A N7A NAI doub 260 n y 
C8A H8A NAI sing 261 n n 
N7A C5A NAI sing 262 n y 
C5A C6A NAI sing 263 n y 
C5A C4A NAI doub 264 n y 
C6A N6A NAI sing 265 n n 
C6A N1A NAI doub 266 n y 
N6A H61A NAI sing 267 n n 
N6A H62A NAI sing 268 n n 
N1A C2A NAI sing 269 n y 
C2A N3A NAI doub 270 n y 
C2A H2A NAI sing 271 n n 
N3A C4A NAI sing 272 n y 
O3 PN NAI sing 273 n n 
PN O1N NAI sing 274 n n 
PN O2N NAI doub 275 n n 
PN O5D NAI sing 276 n n 
O1N HO1N NAI sing 277 n n 
O5D C5D NAI sing 278 n n 
C5D C4D NAI sing 279 n n 
C5D H51N NAI sing 280 n n 
C5D H52N NAI sing 281 n n 
C4D O4D NAI sing 282 n n 
C4D C3D NAI sing 283 n n 
C4D H4D NAI sing 284 n n 
O4D C1D NAI sing 285 n n 
C3D O3D NAI sing 286 n n 
C3D C2D NAI sing 287 n n 
C3D H3D NAI sing 288 n n 
O3D HO3N NAI sing 289 n n 
C2D O2D NAI sing 290 n n 
C2D C1D NAI sing 291 n n 
C2D H2D NAI sing 292 n n 
O2D HO2N NAI sing 293 n n 
C1D N1N NAI sing 294 n n 
C1D H1D NAI sing 295 n n 
N1N C2N NAI sing 296 n n 
N1N C6N NAI sing 297 n n 
C2N C3N NAI doub 298 n n 
C2N H2N NAI sing 299 n n 
C3N C7N NAI sing 300 n n 
C3N C4N NAI sing 301 n n 
C7N O7N NAI doub 302 n n 
C7N N7N NAI sing 303 n n 
N7N H71N NAI sing 304 n n 
N7N H72N NAI sing 305 n n 
C4N C5N NAI sing 306 n n 
C4N H4N NAI sing 307 n n 
C4N H42N NAI sing 308 n n 
C5N C6N NAI doub 309 n n 
C5N H5N NAI sing 310 n n 
C6N H6N NAI sing 311 n n 
#
_atom_sites.entry_id                     2DLD 
_atom_sites.fract_transf_matrix[1][1]    0.011601 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004972 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016103 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014057 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAI A 1 401 401 NAI NAD . 
D 3 OXM A 1 402 402 OXM OXM . 
E 2 NAI B 1 401 401 NAI NAD . 
F 3 OXM B 1 402 402 OXM OXM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . E 2 37.134 12.4 19.649 1 79.5 ? PA NAI 401 B 1 
HETATM 2 O O1A NAI . . . E 2 37.747 11.021 19.666 1 79.1 ? O1A NAI 401 B 1 
HETATM 3 O O2A NAI . . . E 2 37.864 13.478 18.839 1 79.32 ? O2A NAI 401 B 1 
HETATM 4 O O5B NAI . . . E 2 36.946 12.898 21.159 1 77.41 ? O5B NAI 401 B 1 
HETATM 5 C C5B NAI . . . E 2 37.449 14.27 21.551 1 74 ? C5B NAI 401 B 1 
HETATM 6 C C4B NAI . . . E 2 38.181 14.1 22.813 1 71.89 ? C4B NAI 401 B 1 
HETATM 7 O O4B NAI . . . E 2 37.657 12.795 23.443 1 69.19 ? O4B NAI 401 B 1 
HETATM 8 C C3B NAI . . . E 2 39.728 13.845 22.775 1 71.26 ? C3B NAI 401 B 1 
HETATM 9 O O3B NAI . . . E 2 40.383 15.007 23.477 1 71.52 ? O3B NAI 401 B 1 
HETATM 10 C C2B NAI . . . E 2 40.022 12.529 23.432 1 70.46 ? C2B NAI 401 B 1 
HETATM 11 O O2B NAI . . . E 2 41.148 12.344 24.155 1 70.32 ? O2B NAI 401 B 1 
HETATM 12 C C1B NAI . . . E 2 38.716 12.379 24.216 1 68.65 ? C1B NAI 401 B 1 
HETATM 13 N N9A NAI . . . E 2 38.459 11.1 24.745 1 67.12 ? N9A NAI 401 B 1 
HETATM 14 C C8A NAI . . . E 2 38.694 9.824 24.272 1 66.68 ? C8A NAI 401 B 1 
HETATM 15 N N7A NAI . . . E 2 38.387 8.84 25.095 1 65.74 ? N7A NAI 401 B 1 
HETATM 16 C C5A NAI . . . E 2 37.942 9.413 26.207 1 65.74 ? C5A NAI 401 B 1 
HETATM 17 C C6A NAI . . . E 2 37.415 8.809 27.439 1 65.96 ? C6A NAI 401 B 1 
HETATM 18 N N6A NAI . . . E 2 37.303 7.528 27.683 1 65.4 ? N6A NAI 401 B 1 
HETATM 19 N N1A NAI . . . E 2 37.022 9.76 28.35 1 66.58 ? N1A NAI 401 B 1 
HETATM 20 C C2A NAI . . . E 2 37.098 11.091 28.21 1 67.18 ? C2A NAI 401 B 1 
HETATM 21 N N3A NAI . . . E 2 37.588 11.706 27.054 1 66.33 ? N3A NAI 401 B 1 
HETATM 22 C C4A NAI . . . E 2 37.989 10.821 26.059 1 66.44 ? C4A NAI 401 B 1 
HETATM 23 O O3 NAI . . . E 2 35.647 12.296 19.203 1 78.26 ? O3 NAI 401 B 1 
HETATM 24 P PN NAI . . . E 2 34.53 13.254 18.394 1 76.15 ? PN NAI 401 B 1 
HETATM 25 O O1N NAI . . . E 2 35.199 13.707 17.172 1 75.2 ? O1N NAI 401 B 1 
HETATM 26 O O2N NAI . . . E 2 33.957 14.213 19.352 1 74.47 ? O2N NAI 401 B 1 
HETATM 27 O O5D NAI . . . E 2 33.417 12.182 18.051 1 74.83 ? O5D NAI 401 B 1 
HETATM 28 C C5D NAI . . . E 2 31.993 12.237 18.128 1 73.91 ? C5D NAI 401 B 1 
HETATM 29 C C4D NAI . . . E 2 31.385 10.928 18.354 1 73.93 ? C4D NAI 401 B 1 
HETATM 30 O O4D NAI . . . E 2 30.428 10.687 17.134 1 72.85 ? O4D NAI 401 B 1 
HETATM 31 C C3D NAI . . . E 2 32.248 9.627 18.279 1 73.64 ? C3D NAI 401 B 1 
HETATM 32 O O3D NAI . . . E 2 32.768 9.397 19.531 1 73.69 ? O3D NAI 401 B 1 
HETATM 33 C C2D NAI . . . E 2 31.517 8.553 17.523 1 73.21 ? C2D NAI 401 B 1 
HETATM 34 O O2D NAI . . . E 2 31.36 7.314 18.044 1 73.24 ? O2D NAI 401 B 1 
HETATM 35 C C1D NAI . . . E 2 30.248 9.268 17.016 1 71.37 ? C1D NAI 401 B 1 
HETATM 36 N N1N NAI . . . E 2 29.503 8.829 15.751 1 68.44 ? N1N NAI 401 B 1 
HETATM 37 C C2N NAI . . . E 2 28.116 9.003 15.821 1 65.71 ? C2N NAI 401 B 1 
HETATM 38 C C3N NAI . . . E 2 27.448 8.587 14.698 1 63.08 ? C3N NAI 401 B 1 
HETATM 39 C C7N NAI . . . E 2 25.914 8.879 14.904 1 60.65 ? C7N NAI 401 B 1 
HETATM 40 O O7N NAI . . . E 2 25.207 9.003 13.916 1 59.53 ? O7N NAI 401 B 1 
HETATM 41 N N7N NAI . . . E 2 25.504 9.035 16.178 1 58.18 ? N7N NAI 401 B 1 
HETATM 42 C C4N NAI . . . E 2 27.975 8.032 13.525 1 63.46 ? C4N NAI 401 B 1 
HETATM 43 C C5N NAI . . . E 2 29.393 7.899 13.586 1 64.8 ? C5N NAI 401 B 1 
HETATM 44 C C6N NAI . . . E 2 30.125 8.266 14.682 1 66.67 ? C6N NAI 401 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           44 
#