data_2DN1 # _model_server_result.job_id 0A_3PSZkJ18bOgxW1JxKXQ _model_server_result.datetime_utc '2024-11-22 17:52:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":143}' # _entry.id 2DN1 # _exptl.entry_id 2DN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DN1 _cell.length_a 53.435 _cell.length_b 53.435 _cell.length_c 191.709 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 C FE HEM . A HEM 142 1_555 D O1 OXY . A OXY 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc3 C FE HEM . A HEM 142 1_555 D O2 OXY . A OXY 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc5 G FE HEM . B HEM 147 1_555 H O1 OXY . B OXY 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? metalc ? metalc6 G FE HEM . B HEM 147 1_555 H O2 OXY . B OXY 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 313 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 2DN1 _atom_sites.fract_transf_matrix[1][1] 0.018714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 142 142 HEM HEM . D 4 OXY A 1 143 143 OXY O2 . E 5 MBN A 1 1001 1 MBN MBN . F 5 MBN A 1 1002 2 MBN MBN . G 3 HEM B 1 147 147 HEM HEM . H 4 OXY B 1 148 148 OXY O2 . I 6 HOH A 1 1003 1 HOH HOH . I 6 HOH A 2 1004 2 HOH HOH . I 6 HOH A 3 1005 3 HOH HOH . I 6 HOH A 4 1006 4 HOH HOH . I 6 HOH A 5 1007 5 HOH HOH . I 6 HOH A 6 1008 6 HOH HOH . I 6 HOH A 7 1009 7 HOH HOH . I 6 HOH A 8 1010 11 HOH HOH . I 6 HOH A 9 1011 13 HOH HOH . I 6 HOH A 10 1012 14 HOH HOH . I 6 HOH A 11 1013 15 HOH HOH . I 6 HOH A 12 1014 16 HOH HOH . I 6 HOH A 13 1015 17 HOH HOH . I 6 HOH A 14 1016 20 HOH HOH . I 6 HOH A 15 1017 22 HOH HOH . I 6 HOH A 16 1018 23 HOH HOH . I 6 HOH A 17 1019 24 HOH HOH . I 6 HOH A 18 1020 25 HOH HOH . I 6 HOH A 19 1021 26 HOH HOH . I 6 HOH A 20 1022 27 HOH HOH . I 6 HOH A 21 1023 32 HOH HOH . I 6 HOH A 22 1024 33 HOH HOH . I 6 HOH A 23 1025 34 HOH HOH . I 6 HOH A 24 1026 36 HOH HOH . I 6 HOH A 25 1027 37 HOH HOH . I 6 HOH A 26 1028 38 HOH HOH . I 6 HOH A 27 1029 40 HOH HOH . I 6 HOH A 28 1030 41 HOH HOH . I 6 HOH A 29 1031 44 HOH HOH . I 6 HOH A 30 1032 45 HOH HOH . I 6 HOH A 31 1033 46 HOH HOH . I 6 HOH A 32 1034 47 HOH HOH . I 6 HOH A 33 1035 49 HOH HOH . I 6 HOH A 34 1036 50 HOH HOH . I 6 HOH A 35 1037 51 HOH HOH . I 6 HOH A 36 1038 52 HOH HOH . I 6 HOH A 37 1039 54 HOH HOH . I 6 HOH A 38 1040 59 HOH HOH . I 6 HOH A 39 1041 61 HOH HOH . I 6 HOH A 40 1042 62 HOH HOH . I 6 HOH A 41 1043 65 HOH HOH . I 6 HOH A 42 1044 69 HOH HOH . I 6 HOH A 43 1045 70 HOH HOH . I 6 HOH A 44 1046 71 HOH HOH . I 6 HOH A 45 1047 73 HOH HOH . I 6 HOH A 46 1048 74 HOH HOH . I 6 HOH A 47 1049 75 HOH HOH . I 6 HOH A 48 1050 77 HOH HOH . I 6 HOH A 49 1051 78 HOH HOH . I 6 HOH A 50 1052 80 HOH HOH . I 6 HOH A 51 1053 82 HOH HOH . I 6 HOH A 52 1054 84 HOH HOH . I 6 HOH A 53 1055 85 HOH HOH . I 6 HOH A 54 1056 86 HOH HOH . I 6 HOH A 55 1057 88 HOH HOH . I 6 HOH A 56 1058 89 HOH HOH . I 6 HOH A 57 1059 92 HOH HOH . I 6 HOH A 58 1060 95 HOH HOH . I 6 HOH A 59 1061 97 HOH HOH . I 6 HOH A 60 1062 99 HOH HOH . I 6 HOH A 61 1063 100 HOH HOH . I 6 HOH A 62 1064 105 HOH HOH . I 6 HOH A 63 1065 106 HOH HOH . I 6 HOH A 64 1066 107 HOH HOH . I 6 HOH A 65 1067 108 HOH HOH . I 6 HOH A 66 1068 109 HOH HOH . I 6 HOH A 67 1069 110 HOH HOH . I 6 HOH A 68 1070 111 HOH HOH . I 6 HOH A 69 1071 112 HOH HOH . I 6 HOH A 70 1072 113 HOH HOH . I 6 HOH A 71 1073 114 HOH HOH . I 6 HOH A 72 1074 116 HOH HOH . I 6 HOH A 73 1075 118 HOH HOH . I 6 HOH A 74 1076 119 HOH HOH . I 6 HOH A 75 1077 120 HOH HOH . I 6 HOH A 76 1078 121 HOH HOH . I 6 HOH A 77 1079 122 HOH HOH . I 6 HOH A 78 1080 123 HOH HOH . I 6 HOH A 79 1081 124 HOH HOH . I 6 HOH A 80 1082 125 HOH HOH . I 6 HOH A 81 1083 126 HOH HOH . I 6 HOH A 82 1084 127 HOH HOH . I 6 HOH A 83 1085 128 HOH HOH . I 6 HOH A 84 1086 133 HOH HOH . I 6 HOH A 85 1087 136 HOH HOH . I 6 HOH A 86 1088 137 HOH HOH . I 6 HOH A 87 1089 138 HOH HOH . I 6 HOH A 88 1090 139 HOH HOH . I 6 HOH A 89 1091 141 HOH HOH . I 6 HOH A 90 1092 142 HOH HOH . I 6 HOH A 91 1093 145 HOH HOH . I 6 HOH A 92 1094 146 HOH HOH . I 6 HOH A 93 1095 149 HOH HOH . I 6 HOH A 94 1096 150 HOH HOH . I 6 HOH A 95 1097 151 HOH HOH . I 6 HOH A 96 1098 153 HOH HOH . I 6 HOH A 97 1099 154 HOH HOH . I 6 HOH A 98 1100 155 HOH HOH . I 6 HOH A 99 1101 156 HOH HOH . I 6 HOH A 100 1102 157 HOH HOH . I 6 HOH A 101 1103 159 HOH HOH . I 6 HOH A 102 1104 160 HOH HOH . I 6 HOH A 103 1105 161 HOH HOH . I 6 HOH A 104 1106 163 HOH HOH . I 6 HOH A 105 1107 164 HOH HOH . I 6 HOH A 106 1108 165 HOH HOH . I 6 HOH A 107 1109 166 HOH HOH . I 6 HOH A 108 1110 171 HOH HOH . I 6 HOH A 109 1111 172 HOH HOH . I 6 HOH A 110 1112 174 HOH HOH . I 6 HOH A 111 1113 175 HOH HOH . I 6 HOH A 112 1114 176 HOH HOH . I 6 HOH A 113 1115 180 HOH HOH . I 6 HOH A 114 1116 181 HOH HOH . I 6 HOH A 115 1117 182 HOH HOH . I 6 HOH A 116 1118 185 HOH HOH . I 6 HOH A 117 1119 189 HOH HOH . I 6 HOH A 118 1120 190 HOH HOH . I 6 HOH A 119 1121 191 HOH HOH . I 6 HOH A 120 1122 195 HOH HOH . I 6 HOH A 121 1123 197 HOH HOH . I 6 HOH A 122 1124 198 HOH HOH . I 6 HOH A 123 1125 200 HOH HOH . I 6 HOH A 124 1126 203 HOH HOH . I 6 HOH A 125 1127 204 HOH HOH . I 6 HOH A 126 1128 205 HOH HOH . I 6 HOH A 127 1129 208 HOH HOH . I 6 HOH A 128 1130 212 HOH HOH . I 6 HOH A 129 1131 214 HOH HOH . I 6 HOH A 130 1132 215 HOH HOH . I 6 HOH A 131 1133 217 HOH HOH . I 6 HOH A 132 1134 220 HOH HOH . I 6 HOH A 133 1135 221 HOH HOH . I 6 HOH A 134 1136 225 HOH HOH . I 6 HOH A 135 1137 226 HOH HOH . I 6 HOH A 136 1138 227 HOH HOH . I 6 HOH A 137 1139 228 HOH HOH . I 6 HOH A 138 1140 229 HOH HOH . J 6 HOH B 1 149 8 HOH HOH . J 6 HOH B 2 150 9 HOH HOH . J 6 HOH B 3 151 10 HOH HOH . J 6 HOH B 4 152 12 HOH HOH . J 6 HOH B 5 153 18 HOH HOH . J 6 HOH B 6 154 19 HOH HOH . J 6 HOH B 7 155 21 HOH HOH . J 6 HOH B 8 156 28 HOH HOH . J 6 HOH B 9 157 29 HOH HOH . J 6 HOH B 10 158 30 HOH HOH . J 6 HOH B 11 159 31 HOH HOH . J 6 HOH B 12 160 35 HOH HOH . J 6 HOH B 13 161 39 HOH HOH . J 6 HOH B 14 162 42 HOH HOH . J 6 HOH B 15 163 43 HOH HOH . J 6 HOH B 16 164 48 HOH HOH . J 6 HOH B 17 165 53 HOH HOH . J 6 HOH B 18 166 55 HOH HOH . J 6 HOH B 19 167 56 HOH HOH . J 6 HOH B 20 168 57 HOH HOH . J 6 HOH B 21 169 58 HOH HOH . J 6 HOH B 22 170 60 HOH HOH . J 6 HOH B 23 171 63 HOH HOH . J 6 HOH B 24 172 64 HOH HOH . J 6 HOH B 25 173 66 HOH HOH . J 6 HOH B 26 174 67 HOH HOH . J 6 HOH B 27 175 68 HOH HOH . J 6 HOH B 28 176 72 HOH HOH . J 6 HOH B 29 177 76 HOH HOH . J 6 HOH B 30 178 79 HOH HOH . J 6 HOH B 31 179 81 HOH HOH . J 6 HOH B 32 180 83 HOH HOH . J 6 HOH B 33 181 87 HOH HOH . J 6 HOH B 34 182 90 HOH HOH . J 6 HOH B 35 183 91 HOH HOH . J 6 HOH B 36 184 93 HOH HOH . J 6 HOH B 37 185 94 HOH HOH . J 6 HOH B 38 186 96 HOH HOH . J 6 HOH B 39 187 98 HOH HOH . J 6 HOH B 40 188 101 HOH HOH . J 6 HOH B 41 189 102 HOH HOH . J 6 HOH B 42 190 103 HOH HOH . J 6 HOH B 43 191 104 HOH HOH . J 6 HOH B 44 192 115 HOH HOH . J 6 HOH B 45 193 117 HOH HOH . J 6 HOH B 46 194 129 HOH HOH . J 6 HOH B 47 195 130 HOH HOH . J 6 HOH B 48 196 131 HOH HOH . J 6 HOH B 49 197 132 HOH HOH . J 6 HOH B 50 198 134 HOH HOH . J 6 HOH B 51 199 135 HOH HOH . J 6 HOH B 52 200 140 HOH HOH . J 6 HOH B 53 201 143 HOH HOH . J 6 HOH B 54 202 144 HOH HOH . J 6 HOH B 55 203 147 HOH HOH . J 6 HOH B 56 204 148 HOH HOH . J 6 HOH B 57 205 152 HOH HOH . J 6 HOH B 58 206 158 HOH HOH . J 6 HOH B 59 207 162 HOH HOH . J 6 HOH B 60 208 167 HOH HOH . J 6 HOH B 61 209 168 HOH HOH . J 6 HOH B 62 210 169 HOH HOH . J 6 HOH B 63 211 170 HOH HOH . J 6 HOH B 64 212 173 HOH HOH . J 6 HOH B 65 213 177 HOH HOH . J 6 HOH B 66 214 178 HOH HOH . J 6 HOH B 67 215 179 HOH HOH . J 6 HOH B 68 216 183 HOH HOH . J 6 HOH B 69 217 184 HOH HOH . J 6 HOH B 70 218 186 HOH HOH . J 6 HOH B 71 219 187 HOH HOH . J 6 HOH B 72 220 188 HOH HOH . J 6 HOH B 73 221 192 HOH HOH . J 6 HOH B 74 222 193 HOH HOH . J 6 HOH B 75 223 194 HOH HOH . J 6 HOH B 76 224 196 HOH HOH . J 6 HOH B 77 225 199 HOH HOH . J 6 HOH B 78 226 201 HOH HOH . J 6 HOH B 79 227 202 HOH HOH . J 6 HOH B 80 228 206 HOH HOH . J 6 HOH B 81 229 207 HOH HOH . J 6 HOH B 82 230 209 HOH HOH . J 6 HOH B 83 231 210 HOH HOH . J 6 HOH B 84 232 211 HOH HOH . J 6 HOH B 85 233 213 HOH HOH . J 6 HOH B 86 234 216 HOH HOH . J 6 HOH B 87 235 218 HOH HOH . J 6 HOH B 88 236 219 HOH HOH . J 6 HOH B 89 237 222 HOH HOH . J 6 HOH B 90 238 223 HOH HOH . J 6 HOH B 91 239 224 HOH HOH . J 6 HOH B 92 240 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . D 4 39.051 29.107 16.621 1 14.13 ? O1 OXY 143 A 1 HETATM 2 O O2 OXY . . . D 4 38.262 28.183 16.839 1 35.08 ? O2 OXY 143 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #