data_2DN3
#
_model_server_result.job_id            GN4288HoO1QNSJqa3eRuVQ 
_model_server_result.datetime_utc      '2024-11-04 23:18:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dn3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":143}' 
#
_entry.id    2DN3 
#
_exptl.entry_id    2DN3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              28.01 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CARBON MONOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2DN3 
_cell.length_a            53.27 
_cell.length_b            53.27 
_cell.length_c            189.78 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DN3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc2 C FE HEM . A HEM 142 1_555 D C CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? 
metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc4 E FE HEM . B HEM 147 1_555 F C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.711 ? 
#
_chem_comp.formula           'C O' 
_chem_comp.formula_weight    28.01 
_chem_comp.id                CMO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CARBON MONOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_chem_comp_bond.atom_id_1             C 
_chem_comp_bond.atom_id_2             O 
_chem_comp_bond.comp_id               CMO 
_chem_comp_bond.value_order           trip 
_chem_comp_bond.pdbx_ordinal          70 
_chem_comp_bond.pdbx_stereo_config    n 
_chem_comp_bond.pdbx_aromatic_flag    n 
#
_atom_sites.entry_id                     2DN3 
_atom_sites.fract_transf_matrix[1][1]    0.018772 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005242 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 142 142 HEM HEM . 
D 4 CMO A 1 143 143 CMO CMO . 
E 3 HEM B 1 147 147 HEM HEM . 
F 4 CMO B 1 148 148 CMO CMO . 
G 5 HOH A 1 144 1 HOH HOH . 
G 5 HOH A 2 145 2 HOH HOH . 
G 5 HOH A 3 146 3 HOH HOH . 
G 5 HOH A 4 147 4 HOH HOH . 
G 5 HOH A 5 148 6 HOH HOH . 
G 5 HOH A 6 149 8 HOH HOH . 
G 5 HOH A 7 150 10 HOH HOH . 
G 5 HOH A 8 151 12 HOH HOH . 
G 5 HOH A 9 152 13 HOH HOH . 
G 5 HOH A 10 153 14 HOH HOH . 
G 5 HOH A 11 154 15 HOH HOH . 
G 5 HOH A 12 155 17 HOH HOH . 
G 5 HOH A 13 156 19 HOH HOH . 
G 5 HOH A 14 157 20 HOH HOH . 
G 5 HOH A 15 158 22 HOH HOH . 
G 5 HOH A 16 159 23 HOH HOH . 
G 5 HOH A 17 160 24 HOH HOH . 
G 5 HOH A 18 161 25 HOH HOH . 
G 5 HOH A 19 162 26 HOH HOH . 
G 5 HOH A 20 163 27 HOH HOH . 
G 5 HOH A 21 164 34 HOH HOH . 
G 5 HOH A 22 165 35 HOH HOH . 
G 5 HOH A 23 166 36 HOH HOH . 
G 5 HOH A 24 167 37 HOH HOH . 
G 5 HOH A 25 168 38 HOH HOH . 
G 5 HOH A 26 169 40 HOH HOH . 
G 5 HOH A 27 170 41 HOH HOH . 
G 5 HOH A 28 171 44 HOH HOH . 
G 5 HOH A 29 172 46 HOH HOH . 
G 5 HOH A 30 173 47 HOH HOH . 
G 5 HOH A 31 174 48 HOH HOH . 
G 5 HOH A 32 175 49 HOH HOH . 
G 5 HOH A 33 176 52 HOH HOH . 
G 5 HOH A 34 177 55 HOH HOH . 
G 5 HOH A 35 178 57 HOH HOH . 
G 5 HOH A 36 179 58 HOH HOH . 
G 5 HOH A 37 180 60 HOH HOH . 
G 5 HOH A 38 181 61 HOH HOH . 
G 5 HOH A 39 182 62 HOH HOH . 
G 5 HOH A 40 183 64 HOH HOH . 
G 5 HOH A 41 184 66 HOH HOH . 
G 5 HOH A 42 185 70 HOH HOH . 
G 5 HOH A 43 186 71 HOH HOH . 
G 5 HOH A 44 187 73 HOH HOH . 
G 5 HOH A 45 188 74 HOH HOH . 
G 5 HOH A 46 189 77 HOH HOH . 
G 5 HOH A 47 190 80 HOH HOH . 
G 5 HOH A 48 191 83 HOH HOH . 
G 5 HOH A 49 192 85 HOH HOH . 
G 5 HOH A 50 193 86 HOH HOH . 
G 5 HOH A 51 194 87 HOH HOH . 
G 5 HOH A 52 195 88 HOH HOH . 
G 5 HOH A 53 196 89 HOH HOH . 
G 5 HOH A 54 197 90 HOH HOH . 
G 5 HOH A 55 198 91 HOH HOH . 
G 5 HOH A 56 199 98 HOH HOH . 
G 5 HOH A 57 200 100 HOH HOH . 
G 5 HOH A 58 201 101 HOH HOH . 
G 5 HOH A 59 202 102 HOH HOH . 
G 5 HOH A 60 203 103 HOH HOH . 
G 5 HOH A 61 204 106 HOH HOH . 
G 5 HOH A 62 205 107 HOH HOH . 
G 5 HOH A 63 206 109 HOH HOH . 
G 5 HOH A 64 207 112 HOH HOH . 
G 5 HOH A 65 208 119 HOH HOH . 
G 5 HOH A 66 209 121 HOH HOH . 
G 5 HOH A 67 210 122 HOH HOH . 
G 5 HOH A 68 211 123 HOH HOH . 
G 5 HOH A 69 212 125 HOH HOH . 
G 5 HOH A 70 213 126 HOH HOH . 
G 5 HOH A 71 214 129 HOH HOH . 
G 5 HOH A 72 215 131 HOH HOH . 
G 5 HOH A 73 216 134 HOH HOH . 
G 5 HOH A 74 217 135 HOH HOH . 
G 5 HOH A 75 218 136 HOH HOH . 
G 5 HOH A 76 219 137 HOH HOH . 
G 5 HOH A 77 220 140 HOH HOH . 
G 5 HOH A 78 221 141 HOH HOH . 
G 5 HOH A 79 222 142 HOH HOH . 
G 5 HOH A 80 223 143 HOH HOH . 
G 5 HOH A 81 224 145 HOH HOH . 
G 5 HOH A 82 225 147 HOH HOH . 
G 5 HOH A 83 226 149 HOH HOH . 
G 5 HOH A 84 227 150 HOH HOH . 
G 5 HOH A 85 228 152 HOH HOH . 
G 5 HOH A 86 229 154 HOH HOH . 
G 5 HOH A 87 230 158 HOH HOH . 
G 5 HOH A 88 231 160 HOH HOH . 
G 5 HOH A 89 232 161 HOH HOH . 
G 5 HOH A 90 233 162 HOH HOH . 
G 5 HOH A 91 234 163 HOH HOH . 
G 5 HOH A 92 235 166 HOH HOH . 
G 5 HOH A 93 236 169 HOH HOH . 
G 5 HOH A 94 237 170 HOH HOH . 
G 5 HOH A 95 238 171 HOH HOH . 
G 5 HOH A 96 239 172 HOH HOH . 
G 5 HOH A 97 240 173 HOH HOH . 
G 5 HOH A 98 241 176 HOH HOH . 
G 5 HOH A 99 242 179 HOH HOH . 
G 5 HOH A 100 243 180 HOH HOH . 
G 5 HOH A 101 244 189 HOH HOH . 
G 5 HOH A 102 245 190 HOH HOH . 
G 5 HOH A 103 246 191 HOH HOH . 
G 5 HOH A 104 247 193 HOH HOH . 
G 5 HOH A 105 248 194 HOH HOH . 
G 5 HOH A 106 249 195 HOH HOH . 
G 5 HOH A 107 250 196 HOH HOH . 
G 5 HOH A 108 251 197 HOH HOH . 
G 5 HOH A 109 252 198 HOH HOH . 
G 5 HOH A 110 253 200 HOH HOH . 
G 5 HOH A 111 254 202 HOH HOH . 
G 5 HOH A 112 255 205 HOH HOH . 
G 5 HOH A 113 256 208 HOH HOH . 
G 5 HOH A 114 257 209 HOH HOH . 
G 5 HOH A 115 258 210 HOH HOH . 
G 5 HOH A 116 259 212 HOH HOH . 
H 5 HOH B 1 149 5 HOH HOH . 
H 5 HOH B 2 150 7 HOH HOH . 
H 5 HOH B 3 151 9 HOH HOH . 
H 5 HOH B 4 152 11 HOH HOH . 
H 5 HOH B 5 153 16 HOH HOH . 
H 5 HOH B 6 154 18 HOH HOH . 
H 5 HOH B 7 155 21 HOH HOH . 
H 5 HOH B 8 156 28 HOH HOH . 
H 5 HOH B 9 157 29 HOH HOH . 
H 5 HOH B 10 158 30 HOH HOH . 
H 5 HOH B 11 159 31 HOH HOH . 
H 5 HOH B 12 160 32 HOH HOH . 
H 5 HOH B 13 161 33 HOH HOH . 
H 5 HOH B 14 162 39 HOH HOH . 
H 5 HOH B 15 163 42 HOH HOH . 
H 5 HOH B 16 164 43 HOH HOH . 
H 5 HOH B 17 165 45 HOH HOH . 
H 5 HOH B 18 166 50 HOH HOH . 
H 5 HOH B 19 167 51 HOH HOH . 
H 5 HOH B 20 168 53 HOH HOH . 
H 5 HOH B 21 169 54 HOH HOH . 
H 5 HOH B 22 170 56 HOH HOH . 
H 5 HOH B 23 171 59 HOH HOH . 
H 5 HOH B 24 172 63 HOH HOH . 
H 5 HOH B 25 173 65 HOH HOH . 
H 5 HOH B 26 174 67 HOH HOH . 
H 5 HOH B 27 175 68 HOH HOH . 
H 5 HOH B 28 176 69 HOH HOH . 
H 5 HOH B 29 177 72 HOH HOH . 
H 5 HOH B 30 178 75 HOH HOH . 
H 5 HOH B 31 179 76 HOH HOH . 
H 5 HOH B 32 180 78 HOH HOH . 
H 5 HOH B 33 181 79 HOH HOH . 
H 5 HOH B 34 182 81 HOH HOH . 
H 5 HOH B 35 183 82 HOH HOH . 
H 5 HOH B 36 184 84 HOH HOH . 
H 5 HOH B 37 185 92 HOH HOH . 
H 5 HOH B 38 186 93 HOH HOH . 
H 5 HOH B 39 187 94 HOH HOH . 
H 5 HOH B 40 188 95 HOH HOH . 
H 5 HOH B 41 189 96 HOH HOH . 
H 5 HOH B 42 190 97 HOH HOH . 
H 5 HOH B 43 191 99 HOH HOH . 
H 5 HOH B 44 192 104 HOH HOH . 
H 5 HOH B 45 193 105 HOH HOH . 
H 5 HOH B 46 194 108 HOH HOH . 
H 5 HOH B 47 195 110 HOH HOH . 
H 5 HOH B 48 196 111 HOH HOH . 
H 5 HOH B 49 197 113 HOH HOH . 
H 5 HOH B 50 198 114 HOH HOH . 
H 5 HOH B 51 199 115 HOH HOH . 
H 5 HOH B 52 200 116 HOH HOH . 
H 5 HOH B 53 201 117 HOH HOH . 
H 5 HOH B 54 202 118 HOH HOH . 
H 5 HOH B 55 203 120 HOH HOH . 
H 5 HOH B 56 204 124 HOH HOH . 
H 5 HOH B 57 205 127 HOH HOH . 
H 5 HOH B 58 206 128 HOH HOH . 
H 5 HOH B 59 207 130 HOH HOH . 
H 5 HOH B 60 208 132 HOH HOH . 
H 5 HOH B 61 209 133 HOH HOH . 
H 5 HOH B 62 210 138 HOH HOH . 
H 5 HOH B 63 211 139 HOH HOH . 
H 5 HOH B 64 212 144 HOH HOH . 
H 5 HOH B 65 213 146 HOH HOH . 
H 5 HOH B 66 214 148 HOH HOH . 
H 5 HOH B 67 215 151 HOH HOH . 
H 5 HOH B 68 216 153 HOH HOH . 
H 5 HOH B 69 217 155 HOH HOH . 
H 5 HOH B 70 218 156 HOH HOH . 
H 5 HOH B 71 219 157 HOH HOH . 
H 5 HOH B 72 220 159 HOH HOH . 
H 5 HOH B 73 221 164 HOH HOH . 
H 5 HOH B 74 222 165 HOH HOH . 
H 5 HOH B 75 223 167 HOH HOH . 
H 5 HOH B 76 224 168 HOH HOH . 
H 5 HOH B 77 225 174 HOH HOH . 
H 5 HOH B 78 226 175 HOH HOH . 
H 5 HOH B 79 227 177 HOH HOH . 
H 5 HOH B 80 228 178 HOH HOH . 
H 5 HOH B 81 229 181 HOH HOH . 
H 5 HOH B 82 230 182 HOH HOH . 
H 5 HOH B 83 231 183 HOH HOH . 
H 5 HOH B 84 232 184 HOH HOH . 
H 5 HOH B 85 233 185 HOH HOH . 
H 5 HOH B 86 234 186 HOH HOH . 
H 5 HOH B 87 235 187 HOH HOH . 
H 5 HOH B 88 236 188 HOH HOH . 
H 5 HOH B 89 237 192 HOH HOH . 
H 5 HOH B 90 238 199 HOH HOH . 
H 5 HOH B 91 239 201 HOH HOH . 
H 5 HOH B 92 240 203 HOH HOH . 
H 5 HOH B 93 241 204 HOH HOH . 
H 5 HOH B 94 242 206 HOH HOH . 
H 5 HOH B 95 243 207 HOH HOH . 
H 5 HOH B 96 244 211 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C CMO . . . D 4 39.14 29.222 16.758 1 14.86 ? C CMO 143 A 1 
HETATM 2 O O CMO . . . D 4 38.298 29.06 17.557 1 14.92 ? O CMO 143 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           2 
#