data_2DPJ # _model_server_result.job_id 0gKqSwdPEJzvYFYuKenXSQ _model_server_result.datetime_utc '2024-11-15 02:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":871}' # _entry.id 2DPJ # _exptl.entry_id 2DPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DPJ _cell.length_a 98.059 _cell.length_b 98.059 _cell.length_c 203.102 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 49.0295 84.921585 33.850333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 6 P DC 872 1_555 A P DOC 7 P DOC 873 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.556 ? covale ? covale2 B O3' DT 1 T DT 839 1_555 B OP1 EDA 2 T EDA 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? covale ? covale3 B O3' DT 1 T DT 839 1_555 B P EDA 2 T EDA 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale4 B O3' EDA 2 T EDA 840 1_555 B P DG 3 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? metalc ? metalc1 C OD2 ASP 34 A ASP 34 1_555 D MG MG . A MG 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 C OD1 ASP 34 A ASP 34 1_555 E MG MG . A MG 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc3 C OD2 ASP 34 A ASP 34 1_555 E MG MG . A MG 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc4 C O LEU 35 A LEU 35 1_555 D MG MG . A MG 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc5 C OD1 ASP 126 A ASP 126 1_555 D MG MG . A MG 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc6 C OE2 GLU 127 A GLU 127 1_555 E MG MG . A MG 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc7 D MG MG . A MG 871 1_555 F O1G TTP . A TTP 875 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc8 D MG MG . A MG 871 1_555 F O2B TTP . A TTP 875 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc9 D MG MG . A MG 871 1_555 F O1A TTP . A TTP 875 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc10 E MG MG . A MG 872 1_555 F O1A TTP . A TTP 875 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc11 E MG MG . A MG 872 1_555 I O HOH . A HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? hydrog WATSON-CRICK hydrog1 A N1 DA 1 P DA 867 1_555 B N3 DT 9 T DT 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 1 P DA 867 1_555 B O4 DT 9 T DT 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 DG 2 P DG 868 1_555 B N3 DC 8 T DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N2 DG 2 P DG 868 1_555 B O2 DC 8 T DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O6 DG 2 P DG 868 1_555 B N4 DC 8 T DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 P DG 869 1_555 B N3 DC 7 T DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 P DG 869 1_555 B O2 DC 7 T DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 P DG 869 1_555 B N4 DC 7 T DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 P DA 870 1_555 B N3 DT 6 T DT 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 P DA 870 1_555 B O4 DT 6 T DT 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 P DC 871 1_555 B N1 DG 5 T DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 P DC 871 1_555 B O6 DG 5 T DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 P DC 871 1_555 B N2 DG 5 T DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 6 P DC 872 1_555 B N1 DG 4 T DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 6 P DC 872 1_555 B O6 DG 4 T DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 6 P DC 872 1_555 B N2 DG 4 T DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DOC 7 P DOC 873 1_555 B N1 DG 3 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 DOC 7 P DOC 873 1_555 B O6 DG 3 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 DOC 7 P DOC 873 1_555 B N2 DG 3 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DPJ _atom_sites.fract_transf_matrix[1][1] 0.010198 _atom_sites.fract_transf_matrix[1][2] 0.005888 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 871 871 MG MG . E 4 MG A 1 872 872 MG MG . F 5 TTP A 1 875 875 TTP TTP . G 6 HOH P 1 914 914 HOH HOH . G 6 HOH P 2 927 927 HOH HOH . G 6 HOH P 3 972 972 HOH HOH . H 6 HOH T 1 900 900 HOH HOH . H 6 HOH T 2 903 903 HOH HOH . H 6 HOH T 3 907 907 HOH HOH . H 6 HOH T 4 908 908 HOH HOH . H 6 HOH T 5 937 937 HOH HOH . H 6 HOH T 6 938 938 HOH HOH . H 6 HOH T 7 942 942 HOH HOH . H 6 HOH T 8 944 944 HOH HOH . H 6 HOH T 9 957 957 HOH HOH . H 6 HOH T 10 969 969 HOH HOH . H 6 HOH T 11 971 971 HOH HOH . H 6 HOH T 12 975 975 HOH HOH . H 6 HOH T 13 985 985 HOH HOH . H 6 HOH T 14 992 992 HOH HOH . I 6 HOH A 1 901 901 HOH HOH . I 6 HOH A 2 902 902 HOH HOH . I 6 HOH A 3 904 904 HOH HOH . I 6 HOH A 4 905 905 HOH HOH . I 6 HOH A 5 906 906 HOH HOH . I 6 HOH A 6 909 909 HOH HOH . I 6 HOH A 7 910 910 HOH HOH . I 6 HOH A 8 911 911 HOH HOH . I 6 HOH A 9 912 912 HOH HOH . I 6 HOH A 10 913 913 HOH HOH . I 6 HOH A 11 915 915 HOH HOH . I 6 HOH A 12 916 916 HOH HOH . I 6 HOH A 13 918 918 HOH HOH . I 6 HOH A 14 919 919 HOH HOH . I 6 HOH A 15 920 920 HOH HOH . I 6 HOH A 16 921 921 HOH HOH . I 6 HOH A 17 923 923 HOH HOH . I 6 HOH A 18 924 924 HOH HOH . I 6 HOH A 19 925 925 HOH HOH . I 6 HOH A 20 926 926 HOH HOH . I 6 HOH A 21 928 928 HOH HOH . I 6 HOH A 22 929 929 HOH HOH . I 6 HOH A 23 930 930 HOH HOH . I 6 HOH A 24 931 931 HOH HOH . I 6 HOH A 25 932 932 HOH HOH . I 6 HOH A 26 933 933 HOH HOH . I 6 HOH A 27 934 934 HOH HOH . I 6 HOH A 28 935 935 HOH HOH . I 6 HOH A 29 936 936 HOH HOH . I 6 HOH A 30 939 939 HOH HOH . I 6 HOH A 31 940 940 HOH HOH . I 6 HOH A 32 941 941 HOH HOH . I 6 HOH A 33 946 946 HOH HOH . I 6 HOH A 34 948 948 HOH HOH . I 6 HOH A 35 949 949 HOH HOH . I 6 HOH A 36 950 950 HOH HOH . I 6 HOH A 37 951 951 HOH HOH . I 6 HOH A 38 953 953 HOH HOH . I 6 HOH A 39 954 954 HOH HOH . I 6 HOH A 40 955 955 HOH HOH . I 6 HOH A 41 956 956 HOH HOH . I 6 HOH A 42 958 958 HOH HOH . I 6 HOH A 43 959 959 HOH HOH . I 6 HOH A 44 960 960 HOH HOH . I 6 HOH A 45 961 961 HOH HOH . I 6 HOH A 46 962 962 HOH HOH . I 6 HOH A 47 963 963 HOH HOH . I 6 HOH A 48 964 964 HOH HOH . I 6 HOH A 49 965 965 HOH HOH . I 6 HOH A 50 966 966 HOH HOH . I 6 HOH A 51 967 967 HOH HOH . I 6 HOH A 52 968 968 HOH HOH . I 6 HOH A 53 970 970 HOH HOH . I 6 HOH A 54 973 973 HOH HOH . I 6 HOH A 55 974 974 HOH HOH . I 6 HOH A 56 976 976 HOH HOH . I 6 HOH A 57 978 978 HOH HOH . I 6 HOH A 58 979 979 HOH HOH . I 6 HOH A 59 980 980 HOH HOH . I 6 HOH A 60 981 981 HOH HOH . I 6 HOH A 61 983 983 HOH HOH . I 6 HOH A 62 984 984 HOH HOH . I 6 HOH A 63 986 986 HOH HOH . I 6 HOH A 64 988 988 HOH HOH . I 6 HOH A 65 989 989 HOH HOH . I 6 HOH A 66 990 990 HOH HOH . I 6 HOH A 67 991 991 HOH HOH . I 6 HOH A 68 993 993 HOH HOH . I 6 HOH A 69 994 994 HOH HOH . I 6 HOH A 70 995 995 HOH HOH . I 6 HOH A 71 996 996 HOH HOH . I 6 HOH A 72 997 997 HOH HOH . I 6 HOH A 73 998 998 HOH HOH . I 6 HOH A 74 999 999 HOH HOH . I 6 HOH A 75 1000 1000 HOH HOH . I 6 HOH A 76 1003 1003 HOH HOH . I 6 HOH A 77 1004 1004 HOH HOH . I 6 HOH A 78 1005 1005 HOH HOH . I 6 HOH A 79 1006 1006 HOH HOH . I 6 HOH A 80 1007 1007 HOH HOH . I 6 HOH A 81 1008 1008 HOH HOH . I 6 HOH A 82 1009 1009 HOH HOH . I 6 HOH A 83 1010 1010 HOH HOH . I 6 HOH A 84 1011 1011 HOH HOH . I 6 HOH A 85 1012 1012 HOH HOH . I 6 HOH A 86 1013 1013 HOH HOH . I 6 HOH A 87 1014 1014 HOH HOH . I 6 HOH A 88 1015 1015 HOH HOH . I 6 HOH A 89 1016 1016 HOH HOH . I 6 HOH A 90 1018 1018 HOH HOH . I 6 HOH A 91 1019 1019 HOH HOH . I 6 HOH A 92 1020 1020 HOH HOH . I 6 HOH A 93 1021 1021 HOH HOH . I 6 HOH A 94 1022 1022 HOH HOH . I 6 HOH A 95 1023 1023 HOH HOH . I 6 HOH A 96 1025 1025 HOH HOH . I 6 HOH A 97 1026 1026 HOH HOH . I 6 HOH A 98 1027 1027 HOH HOH . I 6 HOH A 99 1028 1028 HOH HOH . I 6 HOH A 100 1029 1029 HOH HOH . I 6 HOH A 101 1030 1030 HOH HOH . I 6 HOH A 102 1031 1031 HOH HOH . I 6 HOH A 103 1032 1032 HOH HOH . I 6 HOH A 104 1034 1034 HOH HOH . I 6 HOH A 105 1036 1036 HOH HOH . I 6 HOH A 106 1037 1037 HOH HOH . I 6 HOH A 107 1039 1039 HOH HOH . I 6 HOH A 108 1040 1040 HOH HOH . I 6 HOH A 109 1041 1041 HOH HOH . I 6 HOH A 110 1042 1042 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 4.752 _atom_site.Cartn_y 19.461 _atom_site.Cartn_z 14.643 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 871 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #