data_2DPT # _model_server_result.job_id 7ltVZAKo63xAQN5ZGPS8rQ _model_server_result.datetime_utc '2024-11-07 18:55:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1502}' # _entry.id 2DPT # _exptl.entry_id 2DPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DPT _cell.length_a 115.662 _cell.length_b 129.139 _cell.length_c 38.571 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 356 n n O11 C1 TAR sing 357 n n O11 HO1 TAR sing 358 n n C1 C2 TAR sing 359 n n C2 O2 TAR sing 360 n n C2 C3 TAR sing 361 n n C2 H2 TAR sing 362 n n O2 HO2 TAR sing 363 n n C3 O3 TAR sing 364 n n C3 C4 TAR sing 365 n n C3 H3 TAR sing 366 n n O3 HO3 TAR sing 367 n n C4 O4 TAR doub 368 n n C4 O41 TAR sing 369 n n O41 HO4 TAR sing 370 n n # _atom_sites.entry_id 2DPT _atom_sites.fract_transf_matrix[1][1] 0.008646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PUY A 1 501 501 PUY PUC . D 3 TAR A 1 502 502 TAR TAR . E 2 PUY B 1 1501 501 PUY PUC . F 3 TAR B 1 1502 502 TAR TAR . G 4 HOH A 1 1002 1002 HOH HOH . G 4 HOH A 2 1003 1003 HOH HOH . G 4 HOH A 3 1004 1004 HOH HOH . G 4 HOH A 4 1008 1008 HOH HOH . G 4 HOH A 5 1009 1009 HOH HOH . G 4 HOH A 6 1010 1010 HOH HOH . G 4 HOH A 7 1011 1011 HOH HOH . G 4 HOH A 8 1013 1013 HOH HOH . H 4 HOH B 1 1001 1001 HOH HOH . H 4 HOH B 2 1005 1005 HOH HOH . H 4 HOH B 3 1006 1006 HOH HOH . H 4 HOH B 4 1007 1007 HOH HOH . H 4 HOH B 5 1012 1012 HOH HOH . H 4 HOH B 6 1014 1014 HOH HOH . H 4 HOH B 7 1015 1015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TAR . . . F 3 0.549 22.43 23.081 1 79.62 ? O1 TAR 1502 B 1 HETATM 2 O O11 TAR . . . F 3 -0.015 21.313 21.286 1 79.69 ? O11 TAR 1502 B 1 HETATM 3 C C1 TAR . . . F 3 0.309 21.363 22.579 1 80.72 ? C1 TAR 1502 B 1 HETATM 4 C C2 TAR . . . F 3 0.376 20.082 23.402 1 82.29 ? C2 TAR 1502 B 1 HETATM 5 O O2 TAR . . . F 3 0.756 20.377 24.752 1 81.98 ? O2 TAR 1502 B 1 HETATM 6 C C3 TAR . . . F 3 -1.003 19.396 23.413 1 85.15 ? C3 TAR 1502 B 1 HETATM 7 O O3 TAR . . . F 3 -1.973 20.29 23.992 1 83.8 ? O3 TAR 1502 B 1 HETATM 8 C C4 TAR . . . F 3 -0.944 18.107 24.221 1 86.72 ? C4 TAR 1502 B 1 HETATM 9 O O4 TAR . . . F 3 -1.657 17.959 25.198 1 87.15 ? O4 TAR 1502 B 1 HETATM 10 O O41 TAR . . . F 3 -0.092 17.116 23.846 1 88.75 ? O41 TAR 1502 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #