data_2DPX
#
_model_server_result.job_id            yNbfibYYwY6Yo5-qnEt76Q 
_model_server_result.datetime_utc      '2024-11-04 20:34:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dpx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":400}' 
#
_entry.id    2DPX 
#
_exptl.entry_id    2DPX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.98 
_cell.angle_gamma         90 
_cell.entry_id            2DPX 
_cell.length_a            52.163 
_cell.length_b            58.608 
_cell.length_c            53.44 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DPX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G O HOH . A HOH 51 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc2 G O HOH . A HOH 52 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc3 G O HOH . A HOH 53 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc4 G O HOH . A HOH 54 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc5 A OG SER 21 A SER 105 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc6 C MG MG . A MG 400 1_555 D O3B GDP . A GDP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc7 H O HOH . B HOH 56 1_555 E MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc8 H O HOH . B HOH 57 1_555 E MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc9 H O HOH . B HOH 58 1_555 E MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc10 H O HOH . B HOH 59 1_555 E MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc11 B OG SER 21 B SER 105 1_555 E MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc12 E MG MG . B MG 400 1_555 F O3B GDP . B GDP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2DPX 
_atom_sites.fract_transf_matrix[1][1]    0.019171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002689 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 400 400 MG MG . 
D 3 GDP A 1 500 500 GDP GDP . 
E 2 MG B 1 400 400 MG MG . 
F 3 GDP B 1 500 500 GDP GDP . 
G 4 HOH A 1 3 3 HOH HOH . 
G 4 HOH A 2 4 4 HOH HOH . 
G 4 HOH A 3 5 5 HOH HOH . 
G 4 HOH A 4 6 6 HOH HOH . 
G 4 HOH A 5 7 7 HOH HOH . 
G 4 HOH A 6 9 9 HOH HOH . 
G 4 HOH A 7 10 10 HOH HOH . 
G 4 HOH A 8 12 12 HOH HOH . 
G 4 HOH A 9 13 13 HOH HOH . 
G 4 HOH A 10 14 14 HOH HOH . 
G 4 HOH A 11 16 16 HOH HOH . 
G 4 HOH A 12 17 17 HOH HOH . 
G 4 HOH A 13 19 19 HOH HOH . 
G 4 HOH A 14 20 20 HOH HOH . 
G 4 HOH A 15 24 24 HOH HOH . 
G 4 HOH A 16 25 25 HOH HOH . 
G 4 HOH A 17 29 29 HOH HOH . 
G 4 HOH A 18 30 30 HOH HOH . 
G 4 HOH A 19 31 31 HOH HOH . 
G 4 HOH A 20 32 32 HOH HOH . 
G 4 HOH A 21 33 33 HOH HOH . 
G 4 HOH A 22 34 34 HOH HOH . 
G 4 HOH A 23 35 35 HOH HOH . 
G 4 HOH A 24 36 36 HOH HOH . 
G 4 HOH A 25 39 39 HOH HOH . 
G 4 HOH A 26 41 41 HOH HOH . 
G 4 HOH A 27 42 42 HOH HOH . 
G 4 HOH A 28 44 44 HOH HOH . 
G 4 HOH A 29 46 46 HOH HOH . 
G 4 HOH A 30 50 50 HOH HOH . 
G 4 HOH A 31 51 51 HOH HOH . 
G 4 HOH A 32 52 52 HOH HOH . 
G 4 HOH A 33 53 53 HOH HOH . 
G 4 HOH A 34 54 54 HOH HOH . 
G 4 HOH A 35 55 55 HOH HOH . 
G 4 HOH A 36 64 64 HOH HOH . 
G 4 HOH A 37 72 72 HOH HOH . 
G 4 HOH A 38 73 73 HOH HOH . 
G 4 HOH A 39 75 75 HOH HOH . 
G 4 HOH A 40 76 76 HOH HOH . 
G 4 HOH A 41 77 77 HOH HOH . 
G 4 HOH A 42 78 78 HOH HOH . 
G 4 HOH A 43 82 82 HOH HOH . 
G 4 HOH A 44 83 83 HOH HOH . 
H 4 HOH B 1 1 1 HOH HOH . 
H 4 HOH B 2 2 2 HOH HOH . 
H 4 HOH B 3 8 8 HOH HOH . 
H 4 HOH B 4 11 11 HOH HOH . 
H 4 HOH B 5 15 15 HOH HOH . 
H 4 HOH B 6 18 18 HOH HOH . 
H 4 HOH B 7 21 21 HOH HOH . 
H 4 HOH B 8 22 22 HOH HOH . 
H 4 HOH B 9 23 23 HOH HOH . 
H 4 HOH B 10 26 26 HOH HOH . 
H 4 HOH B 11 27 27 HOH HOH . 
H 4 HOH B 12 28 28 HOH HOH . 
H 4 HOH B 13 37 37 HOH HOH . 
H 4 HOH B 14 38 38 HOH HOH . 
H 4 HOH B 15 40 40 HOH HOH . 
H 4 HOH B 16 43 43 HOH HOH . 
H 4 HOH B 17 45 45 HOH HOH . 
H 4 HOH B 18 47 47 HOH HOH . 
H 4 HOH B 19 48 48 HOH HOH . 
H 4 HOH B 20 49 49 HOH HOH . 
H 4 HOH B 21 56 56 HOH HOH . 
H 4 HOH B 22 57 57 HOH HOH . 
H 4 HOH B 23 58 58 HOH HOH . 
H 4 HOH B 24 59 59 HOH HOH . 
H 4 HOH B 25 60 60 HOH HOH . 
H 4 HOH B 26 61 61 HOH HOH . 
H 4 HOH B 27 62 62 HOH HOH . 
H 4 HOH B 28 63 63 HOH HOH . 
H 4 HOH B 29 65 65 HOH HOH . 
H 4 HOH B 30 66 66 HOH HOH . 
H 4 HOH B 31 67 67 HOH HOH . 
H 4 HOH B 32 68 68 HOH HOH . 
H 4 HOH B 33 69 69 HOH HOH . 
H 4 HOH B 34 70 70 HOH HOH . 
H 4 HOH B 35 71 71 HOH HOH . 
H 4 HOH B 36 74 74 HOH HOH . 
H 4 HOH B 37 79 79 HOH HOH . 
H 4 HOH B 38 80 80 HOH HOH . 
H 4 HOH B 39 81 81 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               2.083 
_atom_site.Cartn_y               8.865 
_atom_site.Cartn_z               34.414 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        35.26 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           400 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#