data_2DQ3
#
_model_server_result.job_id            Fna4iEdYNtBnaovfTHDwHA 
_model_server_result.datetime_utc      '2024-11-26 22:34:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dq3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    2DQ3 
#
_exptl.entry_id    2DQ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              433.397 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2DQ3 
_cell.length_a            119.057 
_cell.length_b            119.057 
_cell.length_c            80.66 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DQ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ILE 2 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C PHE 181 A PHE 181 1_555 A N MSE 182 A MSE 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C MSE 182 A MSE 182 1_555 A N LEU 183 A LEU 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale4 A C ARG 363 A ARG 363 1_555 A N MSE 364 A MSE 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale5 A C MSE 364 A MSE 364 1_555 A N ASN 365 A ASN 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 B C MSE 1 B MSE 1 1_555 B N ILE 2 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 B C PHE 181 B PHE 181 1_555 B N MSE 182 B MSE 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale8 B C MSE 182 B MSE 182 1_555 B N LEU 183 B LEU 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale9 B C ARG 363 B ARG 363 1_555 B N MSE 364 B MSE 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 B C MSE 364 B MSE 364 1_555 B N ASN 365 B ASN 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C13 H19 N7 O8 S' 
_chem_comp.formula_weight    433.397 
_chem_comp.id                SSA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N10 CA SSA sing 309 n n 
N10 HN11 SSA sing 310 n n 
N10 HN12 SSA sing 311 n n 
CA CB SSA sing 312 n n 
CA C9 SSA sing 313 n n 
CA HA SSA sing 314 n n 
CB OG SSA sing 315 n n 
CB HB1 SSA sing 316 n n 
CB HB2 SSA sing 317 n n 
OG HOG SSA sing 318 n n 
C9 O9 SSA doub 319 n n 
C9 N8 SSA sing 320 n n 
N8 S1 SSA sing 321 n n 
N8 HN8 SSA sing 322 n n 
S1 O1S SSA doub 323 n n 
S1 O2S SSA doub 324 n n 
S1 O5' SSA sing 325 n n 
O5' C5' SSA sing 326 n n 
C5' C4' SSA sing 327 n n 
C5' "H5'1" SSA sing 328 n n 
C5' "H5'2" SSA sing 329 n n 
C4' O4' SSA sing 330 n n 
C4' C3' SSA sing 331 n n 
C4' H4' SSA sing 332 n n 
O4' C1' SSA sing 333 n n 
C3' O3' SSA sing 334 n n 
C3' C2' SSA sing 335 n n 
C3' H3' SSA sing 336 n n 
O3' HO3' SSA sing 337 n n 
C2' O2' SSA sing 338 n n 
C2' C1' SSA sing 339 n n 
C2' H2' SSA sing 340 n n 
O2' HO2' SSA sing 341 n n 
C1' N9 SSA sing 342 n n 
C1' H1' SSA sing 343 n n 
N9 C8 SSA sing 344 n y 
N9 C4 SSA sing 345 n y 
C8 N7 SSA doub 346 n y 
C8 H8 SSA sing 347 n n 
N7 C5 SSA sing 348 n y 
C5 C6 SSA sing 349 n y 
C5 C4 SSA doub 350 n y 
C6 N6 SSA sing 351 n n 
C6 N1 SSA doub 352 n y 
N6 HN61 SSA sing 353 n n 
N6 HN62 SSA sing 354 n n 
N1 C2 SSA sing 355 n y 
C2 N3 SSA doub 356 n y 
C2 H2 SSA sing 357 n n 
N3 C4 SSA sing 358 n y 
#
_atom_sites.entry_id                     2DQ3 
_atom_sites.fract_transf_matrix[1][1]    0.008399 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008399 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012398 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SSA A 1 1001 1001 SSA SSA . 
D 2 SSA B 1 1002 1002 SSA SSA . 
E 3 HOH A 1 1002 1 HOH HOH . 
E 3 HOH A 2 1003 2 HOH HOH . 
E 3 HOH A 3 1004 3 HOH HOH . 
E 3 HOH A 4 1005 4 HOH HOH . 
E 3 HOH A 5 1006 5 HOH HOH . 
E 3 HOH A 6 1007 6 HOH HOH . 
E 3 HOH A 7 1008 7 HOH HOH . 
E 3 HOH A 8 1009 10 HOH HOH . 
E 3 HOH A 9 1010 11 HOH HOH . 
E 3 HOH A 10 1011 12 HOH HOH . 
E 3 HOH A 11 1012 16 HOH HOH . 
E 3 HOH A 12 1013 17 HOH HOH . 
E 3 HOH A 13 1014 18 HOH HOH . 
E 3 HOH A 14 1015 24 HOH HOH . 
E 3 HOH A 15 1016 25 HOH HOH . 
E 3 HOH A 16 1017 26 HOH HOH . 
E 3 HOH A 17 1018 27 HOH HOH . 
E 3 HOH A 18 1019 28 HOH HOH . 
E 3 HOH A 19 1020 29 HOH HOH . 
E 3 HOH A 20 1021 30 HOH HOH . 
E 3 HOH A 21 1022 32 HOH HOH . 
E 3 HOH A 22 1023 33 HOH HOH . 
E 3 HOH A 23 1024 34 HOH HOH . 
E 3 HOH A 24 1025 35 HOH HOH . 
E 3 HOH A 25 1026 36 HOH HOH . 
E 3 HOH A 26 1027 37 HOH HOH . 
E 3 HOH A 27 1028 39 HOH HOH . 
E 3 HOH A 28 1029 40 HOH HOH . 
E 3 HOH A 29 1030 44 HOH HOH . 
E 3 HOH A 30 1031 46 HOH HOH . 
E 3 HOH A 31 1032 47 HOH HOH . 
E 3 HOH A 32 1033 48 HOH HOH . 
E 3 HOH A 33 1034 49 HOH HOH . 
E 3 HOH A 34 1035 50 HOH HOH . 
E 3 HOH A 35 1036 51 HOH HOH . 
E 3 HOH A 36 1037 52 HOH HOH . 
E 3 HOH A 37 1038 53 HOH HOH . 
E 3 HOH A 38 1039 58 HOH HOH . 
E 3 HOH A 39 1040 59 HOH HOH . 
E 3 HOH A 40 1041 60 HOH HOH . 
E 3 HOH A 41 1042 63 HOH HOH . 
E 3 HOH A 42 1043 64 HOH HOH . 
E 3 HOH A 43 1044 66 HOH HOH . 
E 3 HOH A 44 1045 68 HOH HOH . 
E 3 HOH A 45 1046 69 HOH HOH . 
E 3 HOH A 46 1047 77 HOH HOH . 
F 3 HOH B 1 1003 8 HOH HOH . 
F 3 HOH B 2 1004 9 HOH HOH . 
F 3 HOH B 3 1005 13 HOH HOH . 
F 3 HOH B 4 1006 14 HOH HOH . 
F 3 HOH B 5 1007 15 HOH HOH . 
F 3 HOH B 6 1008 19 HOH HOH . 
F 3 HOH B 7 1009 20 HOH HOH . 
F 3 HOH B 8 1010 21 HOH HOH . 
F 3 HOH B 9 1011 22 HOH HOH . 
F 3 HOH B 10 1012 23 HOH HOH . 
F 3 HOH B 11 1013 31 HOH HOH . 
F 3 HOH B 12 1014 38 HOH HOH . 
F 3 HOH B 13 1015 41 HOH HOH . 
F 3 HOH B 14 1016 42 HOH HOH . 
F 3 HOH B 15 1017 43 HOH HOH . 
F 3 HOH B 16 1018 45 HOH HOH . 
F 3 HOH B 17 1019 54 HOH HOH . 
F 3 HOH B 18 1020 55 HOH HOH . 
F 3 HOH B 19 1021 56 HOH HOH . 
F 3 HOH B 20 1022 57 HOH HOH . 
F 3 HOH B 21 1023 61 HOH HOH . 
F 3 HOH B 22 1024 62 HOH HOH . 
F 3 HOH B 23 1025 65 HOH HOH . 
F 3 HOH B 24 1026 67 HOH HOH . 
F 3 HOH B 25 1027 70 HOH HOH . 
F 3 HOH B 26 1028 71 HOH HOH . 
F 3 HOH B 27 1029 72 HOH HOH . 
F 3 HOH B 28 1030 73 HOH HOH . 
F 3 HOH B 29 1031 74 HOH HOH . 
F 3 HOH B 30 1032 75 HOH HOH . 
F 3 HOH B 31 1033 76 HOH HOH . 
F 3 HOH B 32 1034 78 HOH HOH . 
F 3 HOH B 33 1035 79 HOH HOH . 
F 3 HOH B 34 1036 80 HOH HOH . 
F 3 HOH B 35 1037 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N10 SSA . . . D 2 -13.921 81.652 -0.019 1 63.9 ? N10 SSA 1002 B 1 
HETATM 2 C CA SSA . . . D 2 -14.488 82.471 -1.092 1 62.51 ? CA SSA 1002 B 1 
HETATM 3 C CB SSA . . . D 2 -13.666 82.403 -2.346 1 63.46 ? CB SSA 1002 B 1 
HETATM 4 O OG SSA . . . D 2 -13.743 81.137 -2.978 1 61.72 ? OG SSA 1002 B 1 
HETATM 5 C C9 SSA . . . D 2 -15.89 82.013 -1.383 1 59.98 ? C9 SSA 1002 B 1 
HETATM 6 O O9 SSA . . . D 2 -16.162 80.824 -1.343 1 58.38 ? O9 SSA 1002 B 1 
HETATM 7 N N8 SSA . . . D 2 -16.801 82.946 -1.646 1 58.11 ? N8 SSA 1002 B 1 
HETATM 8 S S1 SSA . . . D 2 -18.301 82.488 -1.965 1 60.06 ? S1 SSA 1002 B 1 
HETATM 9 O O1S SSA . . . D 2 -18.849 82.166 -0.649 1 60.46 ? O1S SSA 1002 B 1 
HETATM 10 O O2S SSA . . . D 2 -18.909 83.558 -2.758 1 61.74 ? O2S SSA 1002 B 1 
HETATM 11 O O5' SSA . . . D 2 -18.153 81.147 -2.763 1 57.56 ? O5' SSA 1002 B 1 
HETATM 12 C C5' SSA . . . D 2 -17.523 81.121 -4.036 1 56.41 ? C5' SSA 1002 B 1 
HETATM 13 C C4' SSA . . . D 2 -18.458 80.646 -5.111 1 56.57 ? C4' SSA 1002 B 1 
HETATM 14 O O4' SSA . . . D 2 -18.868 79.276 -4.893 1 57.77 ? O4' SSA 1002 B 1 
HETATM 15 C C3' SSA . . . D 2 -19.772 81.389 -5.287 1 56.55 ? C3' SSA 1002 B 1 
HETATM 16 O O3' SSA . . . D 2 -19.54 82.599 -5.982 1 53.32 ? O3' SSA 1002 B 1 
HETATM 17 C C2' SSA . . . D 2 -20.514 80.403 -6.172 1 56.9 ? C2' SSA 1002 B 1 
HETATM 18 O O2' SSA . . . D 2 -20.055 80.381 -7.509 1 57.17 ? O2' SSA 1002 B 1 
HETATM 19 C C1' SSA . . . D 2 -20.153 79.081 -5.478 1 58.82 ? C1' SSA 1002 B 1 
HETATM 20 N N9 SSA . . . D 2 -21.057 78.693 -4.396 1 58.82 ? N9 SSA 1002 B 1 
HETATM 21 C C8 SSA . . . D 2 -21.311 79.304 -3.189 1 60.08 ? C8 SSA 1002 B 1 
HETATM 22 N N7 SSA . . . D 2 -22.174 78.658 -2.439 1 60.81 ? N7 SSA 1002 B 1 
HETATM 23 C C5 SSA . . . D 2 -22.511 77.55 -3.204 1 61.69 ? C5 SSA 1002 B 1 
HETATM 24 C C6 SSA . . . D 2 -23.38 76.45 -2.971 1 62.93 ? C6 SSA 1002 B 1 
HETATM 25 N N6 SSA . . . D 2 -24.106 76.31 -1.861 1 64.15 ? N6 SSA 1002 B 1 
HETATM 26 N N1 SSA . . . D 2 -23.475 75.494 -3.939 1 62.94 ? N1 SSA 1002 B 1 
HETATM 27 C C2 SSA . . . D 2 -22.742 75.646 -5.065 1 63.79 ? C2 SSA 1002 B 1 
HETATM 28 N N3 SSA . . . D 2 -21.897 76.636 -5.395 1 62.52 ? N3 SSA 1002 B 1 
HETATM 29 C C4 SSA . . . D 2 -21.827 77.561 -4.412 1 60.59 ? C4 SSA 1002 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#