data_2DQ4 # _model_server_result.job_id mH8ThFfooIQR8pKgMxtUFw _model_server_result.datetime_utc '2025-03-02 23:07:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":506}' # _entry.id 2DQ4 # _exptl.entry_id 2DQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DQ4 _cell.length_a 136.349 _cell.length_b 136.349 _cell.length_c 269.714 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 136.349 0 134.857 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 38 A CYS 38 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 A OE2 GLU 64 A GLU 64 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 A SG CYS 93 A CYS 93 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc5 A SG CYS 96 A CYS 96 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc6 A SG CYS 99 A CYS 99 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 A SG CYS 107 A CYS 107 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc8 B SG CYS 38 B CYS 38 1_555 F ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc9 B NE2 HIS 63 B HIS 63 1_555 F ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc10 B OE2 GLU 64 B GLU 64 1_555 F ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc11 B SG CYS 93 B CYS 93 1_555 G ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc12 B SG CYS 96 B CYS 96 1_555 G ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc13 B SG CYS 99 B CYS 99 1_555 G ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc14 B SG CYS 107 B CYS 107 1_555 G ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 218 n n O1 C6 MES sing 219 n n C2 C3 MES sing 220 n n C2 H21 MES sing 221 n n C2 H22 MES sing 222 n n C3 N4 MES sing 223 n n C3 H31 MES sing 224 n n C3 H32 MES sing 225 n n N4 C5 MES sing 226 n n N4 C7 MES sing 227 n n N4 HN4 MES sing 228 n n C5 C6 MES sing 229 n n C5 H51 MES sing 230 n n C5 H52 MES sing 231 n n C6 H61 MES sing 232 n n C6 H62 MES sing 233 n n C7 C8 MES sing 234 n n C7 H71 MES sing 235 n n C7 H72 MES sing 236 n n C8 S MES sing 237 n n C8 H81 MES sing 238 n n C8 H82 MES sing 239 n n S O1S MES doub 240 n n S O2S MES doub 241 n n S O3S MES sing 242 n n # _atom_sites.entry_id 2DQ4 _atom_sites.fract_transf_matrix[1][1] 0.007334 _atom_sites.fract_transf_matrix[1][2] 0.004234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 501 ZN ZN . D 2 ZN A 1 502 502 ZN ZN . E 3 MES A 1 505 505 MES MES . F 2 ZN B 1 503 503 ZN ZN . G 2 ZN B 1 504 504 ZN ZN . H 3 MES B 1 506 506 MES MES . I 4 HOH A 1 506 1 HOH HOH . I 4 HOH A 2 507 6 HOH HOH . I 4 HOH A 3 508 8 HOH HOH . I 4 HOH A 4 509 9 HOH HOH . I 4 HOH A 5 510 10 HOH HOH . I 4 HOH A 6 511 12 HOH HOH . I 4 HOH A 7 512 13 HOH HOH . I 4 HOH A 8 513 16 HOH HOH . I 4 HOH A 9 514 19 HOH HOH . I 4 HOH A 10 515 20 HOH HOH . I 4 HOH A 11 516 21 HOH HOH . I 4 HOH A 12 517 25 HOH HOH . I 4 HOH A 13 518 26 HOH HOH . I 4 HOH A 14 519 27 HOH HOH . I 4 HOH A 15 520 30 HOH HOH . I 4 HOH A 16 521 31 HOH HOH . I 4 HOH A 17 522 33 HOH HOH . I 4 HOH A 18 523 34 HOH HOH . I 4 HOH A 19 524 43 HOH HOH . I 4 HOH A 20 525 47 HOH HOH . I 4 HOH A 21 526 48 HOH HOH . I 4 HOH A 22 527 51 HOH HOH . I 4 HOH A 23 528 54 HOH HOH . I 4 HOH A 24 529 56 HOH HOH . I 4 HOH A 25 530 57 HOH HOH . I 4 HOH A 26 531 60 HOH HOH . I 4 HOH A 27 532 67 HOH HOH . I 4 HOH A 28 533 69 HOH HOH . I 4 HOH A 29 534 70 HOH HOH . I 4 HOH A 30 535 71 HOH HOH . I 4 HOH A 31 536 73 HOH HOH . I 4 HOH A 32 537 74 HOH HOH . I 4 HOH A 33 538 76 HOH HOH . I 4 HOH A 34 539 81 HOH HOH . I 4 HOH A 35 540 82 HOH HOH . I 4 HOH A 36 541 84 HOH HOH . I 4 HOH A 37 542 85 HOH HOH . I 4 HOH A 38 543 86 HOH HOH . I 4 HOH A 39 544 87 HOH HOH . I 4 HOH A 40 545 89 HOH HOH . I 4 HOH A 41 546 91 HOH HOH . I 4 HOH A 42 547 92 HOH HOH . I 4 HOH A 43 548 100 HOH HOH . I 4 HOH A 44 549 103 HOH HOH . I 4 HOH A 45 550 104 HOH HOH . I 4 HOH A 46 551 105 HOH HOH . I 4 HOH A 47 552 106 HOH HOH . I 4 HOH A 48 553 108 HOH HOH . I 4 HOH A 49 554 111 HOH HOH . I 4 HOH A 50 555 112 HOH HOH . I 4 HOH A 51 556 113 HOH HOH . I 4 HOH A 52 557 116 HOH HOH . I 4 HOH A 53 558 118 HOH HOH . I 4 HOH A 54 559 120 HOH HOH . I 4 HOH A 55 560 126 HOH HOH . I 4 HOH A 56 561 128 HOH HOH . I 4 HOH A 57 562 129 HOH HOH . I 4 HOH A 58 563 130 HOH HOH . I 4 HOH A 59 564 131 HOH HOH . I 4 HOH A 60 565 132 HOH HOH . I 4 HOH A 61 566 139 HOH HOH . I 4 HOH A 62 567 141 HOH HOH . I 4 HOH A 63 568 143 HOH HOH . I 4 HOH A 64 569 144 HOH HOH . I 4 HOH A 65 570 145 HOH HOH . I 4 HOH A 66 571 146 HOH HOH . I 4 HOH A 67 572 151 HOH HOH . I 4 HOH A 68 573 152 HOH HOH . I 4 HOH A 69 574 153 HOH HOH . I 4 HOH A 70 575 154 HOH HOH . I 4 HOH A 71 576 155 HOH HOH . I 4 HOH A 72 577 156 HOH HOH . I 4 HOH A 73 578 158 HOH HOH . I 4 HOH A 74 579 159 HOH HOH . I 4 HOH A 75 580 160 HOH HOH . I 4 HOH A 76 581 161 HOH HOH . I 4 HOH A 77 582 162 HOH HOH . I 4 HOH A 78 583 163 HOH HOH . I 4 HOH A 79 584 164 HOH HOH . I 4 HOH A 80 585 165 HOH HOH . I 4 HOH A 81 586 166 HOH HOH . I 4 HOH A 82 587 167 HOH HOH . I 4 HOH A 83 588 168 HOH HOH . I 4 HOH A 84 589 169 HOH HOH . I 4 HOH A 85 590 170 HOH HOH . I 4 HOH A 86 591 171 HOH HOH . I 4 HOH A 87 592 172 HOH HOH . I 4 HOH A 88 593 173 HOH HOH . I 4 HOH A 89 594 174 HOH HOH . I 4 HOH A 90 595 175 HOH HOH . J 4 HOH B 1 507 2 HOH HOH . J 4 HOH B 2 508 3 HOH HOH . J 4 HOH B 3 509 4 HOH HOH . J 4 HOH B 4 510 5 HOH HOH . J 4 HOH B 5 511 7 HOH HOH . J 4 HOH B 6 512 11 HOH HOH . J 4 HOH B 7 513 14 HOH HOH . J 4 HOH B 8 514 15 HOH HOH . J 4 HOH B 9 515 17 HOH HOH . J 4 HOH B 10 516 18 HOH HOH . J 4 HOH B 11 517 22 HOH HOH . J 4 HOH B 12 518 23 HOH HOH . J 4 HOH B 13 519 24 HOH HOH . J 4 HOH B 14 520 28 HOH HOH . J 4 HOH B 15 521 29 HOH HOH . J 4 HOH B 16 522 32 HOH HOH . J 4 HOH B 17 523 35 HOH HOH . J 4 HOH B 18 524 36 HOH HOH . J 4 HOH B 19 525 37 HOH HOH . J 4 HOH B 20 526 38 HOH HOH . J 4 HOH B 21 527 39 HOH HOH . J 4 HOH B 22 528 40 HOH HOH . J 4 HOH B 23 529 41 HOH HOH . J 4 HOH B 24 530 42 HOH HOH . J 4 HOH B 25 531 44 HOH HOH . J 4 HOH B 26 532 45 HOH HOH . J 4 HOH B 27 533 46 HOH HOH . J 4 HOH B 28 534 49 HOH HOH . J 4 HOH B 29 535 50 HOH HOH . J 4 HOH B 30 536 52 HOH HOH . J 4 HOH B 31 537 53 HOH HOH . J 4 HOH B 32 538 55 HOH HOH . J 4 HOH B 33 539 58 HOH HOH . J 4 HOH B 34 540 59 HOH HOH . J 4 HOH B 35 541 61 HOH HOH . J 4 HOH B 36 542 62 HOH HOH . J 4 HOH B 37 543 63 HOH HOH . J 4 HOH B 38 544 64 HOH HOH . J 4 HOH B 39 545 65 HOH HOH . J 4 HOH B 40 546 66 HOH HOH . J 4 HOH B 41 547 68 HOH HOH . J 4 HOH B 42 548 72 HOH HOH . J 4 HOH B 43 549 75 HOH HOH . J 4 HOH B 44 550 77 HOH HOH . J 4 HOH B 45 551 78 HOH HOH . J 4 HOH B 46 552 79 HOH HOH . J 4 HOH B 47 553 80 HOH HOH . J 4 HOH B 48 554 83 HOH HOH . J 4 HOH B 49 555 88 HOH HOH . J 4 HOH B 50 556 90 HOH HOH . J 4 HOH B 51 557 93 HOH HOH . J 4 HOH B 52 558 94 HOH HOH . J 4 HOH B 53 559 95 HOH HOH . J 4 HOH B 54 560 96 HOH HOH . J 4 HOH B 55 561 97 HOH HOH . J 4 HOH B 56 562 98 HOH HOH . J 4 HOH B 57 563 99 HOH HOH . J 4 HOH B 58 564 101 HOH HOH . J 4 HOH B 59 565 102 HOH HOH . J 4 HOH B 60 566 107 HOH HOH . J 4 HOH B 61 567 109 HOH HOH . J 4 HOH B 62 568 110 HOH HOH . J 4 HOH B 63 569 114 HOH HOH . J 4 HOH B 64 570 115 HOH HOH . J 4 HOH B 65 571 117 HOH HOH . J 4 HOH B 66 572 119 HOH HOH . J 4 HOH B 67 573 121 HOH HOH . J 4 HOH B 68 574 122 HOH HOH . J 4 HOH B 69 575 123 HOH HOH . J 4 HOH B 70 576 124 HOH HOH . J 4 HOH B 71 577 125 HOH HOH . J 4 HOH B 72 578 127 HOH HOH . J 4 HOH B 73 579 133 HOH HOH . J 4 HOH B 74 580 134 HOH HOH . J 4 HOH B 75 581 135 HOH HOH . J 4 HOH B 76 582 136 HOH HOH . J 4 HOH B 77 583 137 HOH HOH . J 4 HOH B 78 584 138 HOH HOH . J 4 HOH B 79 585 140 HOH HOH . J 4 HOH B 80 586 142 HOH HOH . J 4 HOH B 81 587 147 HOH HOH . J 4 HOH B 82 588 148 HOH HOH . J 4 HOH B 83 589 149 HOH HOH . J 4 HOH B 84 590 150 HOH HOH . J 4 HOH B 85 591 157 HOH HOH . J 4 HOH B 86 592 176 HOH HOH . J 4 HOH B 87 593 177 HOH HOH . J 4 HOH B 88 594 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . H 3 45.697 -5.75 57.013 1 57.07 ? O1 MES 506 B 1 HETATM 2 C C2 MES . . . H 3 46.024 -6.609 58.136 1 56.25 ? C2 MES 506 B 1 HETATM 3 C C3 MES . . . H 3 45.303 -5.976 59.307 1 56.71 ? C3 MES 506 B 1 HETATM 4 N N4 MES . . . H 3 43.856 -6.115 59.004 1 56.53 ? N4 MES 506 B 1 HETATM 5 C C5 MES . . . H 3 43.395 -5.566 57.695 1 55.85 ? C5 MES 506 B 1 HETATM 6 C C6 MES . . . H 3 44.342 -6.044 56.599 1 55.57 ? C6 MES 506 B 1 HETATM 7 C C7 MES . . . H 3 42.961 -5.54 60.006 1 56.06 ? C7 MES 506 B 1 HETATM 8 C C8 MES . . . H 3 43.281 -5.966 61.421 1 55.06 ? C8 MES 506 B 1 HETATM 9 S S MES . . . H 3 42.124 -5.061 62.404 1 53.58 ? S MES 506 B 1 HETATM 10 O O1S MES . . . H 3 40.933 -5.022 61.568 1 56.19 ? O1S MES 506 B 1 HETATM 11 O O2S MES . . . H 3 42.597 -3.689 62.682 1 52.44 ? O2S MES 506 B 1 HETATM 12 O O3S MES . . . H 3 41.731 -5.812 63.579 1 55.71 ? O3S MES 506 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 1098 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 12 #