data_2DQN # _model_server_result.job_id AoH5AXYXdAwl6XD4pyPO4w _model_server_result.datetime_utc '2024-12-04 17:05:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":511}' # _entry.id 2DQN # _exptl.entry_id 2DQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.118 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ASPARAGINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DQN _cell.length_a 71.805 _cell.length_b 92.363 _cell.length_c 182.246 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 12 B HIS 12 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 B OE1 GLU 124 B GLU 124 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc3 B OE2 GLU 124 B GLU 124 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 B OE1 GLU 150 B GLU 150 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 E MG MG . B MG 501 1_555 G O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? # _chem_comp.formula 'C4 H8 N2 O3' _chem_comp.formula_weight 132.118 _chem_comp.id ASN _chem_comp.mon_nstd_flag y _chem_comp.name ASPARAGINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASN sing 39 n n N H ASN sing 40 n n N H2 ASN sing 41 n n CA C ASN sing 42 n n CA CB ASN sing 43 n n CA HA ASN sing 44 n n C O ASN doub 45 n n C OXT ASN sing 46 n n CB CG ASN sing 47 n n CB HB2 ASN sing 48 n n CB HB3 ASN sing 49 n n CG OD1 ASN doub 50 n n CG ND2 ASN sing 51 n n ND2 HD21 ASN sing 52 n n ND2 HD22 ASN sing 53 n n OXT HXT ASN sing 54 n n # _atom_sites.entry_id 2DQN _atom_sites.fract_transf_matrix[1][1] 0.013927 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ASN A 1 511 511 ASN ASN . E 5 MG B 1 501 501 MG MG . F 6 HOH A 1 512 1 HOH HOH . F 6 HOH A 2 513 2 HOH HOH . F 6 HOH A 3 514 3 HOH HOH . F 6 HOH A 4 515 4 HOH HOH . F 6 HOH A 5 516 5 HOH HOH . F 6 HOH A 6 517 6 HOH HOH . F 6 HOH A 7 518 7 HOH HOH . F 6 HOH A 8 519 8 HOH HOH . F 6 HOH A 9 520 9 HOH HOH . F 6 HOH A 10 521 10 HOH HOH . F 6 HOH A 11 522 11 HOH HOH . F 6 HOH A 12 523 12 HOH HOH . F 6 HOH A 13 524 14 HOH HOH . F 6 HOH A 14 525 15 HOH HOH . F 6 HOH A 15 526 16 HOH HOH . F 6 HOH A 16 527 17 HOH HOH . F 6 HOH A 17 528 18 HOH HOH . F 6 HOH A 18 529 19 HOH HOH . F 6 HOH A 19 530 20 HOH HOH . F 6 HOH A 20 531 22 HOH HOH . F 6 HOH A 21 532 23 HOH HOH . F 6 HOH A 22 533 24 HOH HOH . F 6 HOH A 23 534 25 HOH HOH . F 6 HOH A 24 535 26 HOH HOH . F 6 HOH A 25 536 27 HOH HOH . F 6 HOH A 26 537 28 HOH HOH . F 6 HOH A 27 538 29 HOH HOH . F 6 HOH A 28 539 30 HOH HOH . F 6 HOH A 29 540 31 HOH HOH . F 6 HOH A 30 541 33 HOH HOH . F 6 HOH A 31 542 35 HOH HOH . F 6 HOH A 32 543 36 HOH HOH . F 6 HOH A 33 544 37 HOH HOH . F 6 HOH A 34 545 38 HOH HOH . F 6 HOH A 35 546 39 HOH HOH . F 6 HOH A 36 547 42 HOH HOH . F 6 HOH A 37 548 43 HOH HOH . F 6 HOH A 38 549 44 HOH HOH . F 6 HOH A 39 550 46 HOH HOH . F 6 HOH A 40 551 49 HOH HOH . F 6 HOH A 41 552 51 HOH HOH . F 6 HOH A 42 553 52 HOH HOH . F 6 HOH A 43 554 54 HOH HOH . F 6 HOH A 44 555 55 HOH HOH . F 6 HOH A 45 556 57 HOH HOH . F 6 HOH A 46 557 58 HOH HOH . F 6 HOH A 47 558 60 HOH HOH . F 6 HOH A 48 559 61 HOH HOH . F 6 HOH A 49 560 62 HOH HOH . F 6 HOH A 50 561 63 HOH HOH . F 6 HOH A 51 562 64 HOH HOH . F 6 HOH A 52 563 65 HOH HOH . F 6 HOH A 53 564 69 HOH HOH . F 6 HOH A 54 565 70 HOH HOH . F 6 HOH A 55 566 71 HOH HOH . F 6 HOH A 56 567 74 HOH HOH . F 6 HOH A 57 568 75 HOH HOH . F 6 HOH A 58 569 77 HOH HOH . F 6 HOH A 59 570 78 HOH HOH . F 6 HOH A 60 571 81 HOH HOH . F 6 HOH A 61 572 82 HOH HOH . F 6 HOH A 62 573 84 HOH HOH . F 6 HOH A 63 574 88 HOH HOH . F 6 HOH A 64 575 89 HOH HOH . F 6 HOH A 65 576 90 HOH HOH . F 6 HOH A 66 577 91 HOH HOH . F 6 HOH A 67 578 92 HOH HOH . F 6 HOH A 68 579 93 HOH HOH . F 6 HOH A 69 580 94 HOH HOH . F 6 HOH A 70 581 95 HOH HOH . F 6 HOH A 71 582 99 HOH HOH . F 6 HOH A 72 583 100 HOH HOH . F 6 HOH A 73 584 101 HOH HOH . F 6 HOH A 74 585 103 HOH HOH . F 6 HOH A 75 586 107 HOH HOH . F 6 HOH A 76 587 112 HOH HOH . F 6 HOH A 77 588 115 HOH HOH . F 6 HOH A 78 589 116 HOH HOH . F 6 HOH A 79 590 117 HOH HOH . F 6 HOH A 80 591 118 HOH HOH . F 6 HOH A 81 592 119 HOH HOH . F 6 HOH A 82 593 121 HOH HOH . F 6 HOH A 83 594 122 HOH HOH . F 6 HOH A 84 595 123 HOH HOH . F 6 HOH A 85 596 124 HOH HOH . F 6 HOH A 86 597 125 HOH HOH . F 6 HOH A 87 598 128 HOH HOH . F 6 HOH A 88 599 130 HOH HOH . F 6 HOH A 89 600 131 HOH HOH . F 6 HOH A 90 601 132 HOH HOH . F 6 HOH A 91 602 134 HOH HOH . F 6 HOH A 92 603 135 HOH HOH . F 6 HOH A 93 604 136 HOH HOH . F 6 HOH A 94 605 137 HOH HOH . F 6 HOH A 95 606 140 HOH HOH . F 6 HOH A 96 607 142 HOH HOH . F 6 HOH A 97 608 143 HOH HOH . F 6 HOH A 98 609 145 HOH HOH . F 6 HOH A 99 610 146 HOH HOH . F 6 HOH A 100 611 147 HOH HOH . F 6 HOH A 101 612 148 HOH HOH . F 6 HOH A 102 613 151 HOH HOH . F 6 HOH A 103 614 152 HOH HOH . F 6 HOH A 104 615 153 HOH HOH . F 6 HOH A 105 616 158 HOH HOH . F 6 HOH A 106 617 159 HOH HOH . F 6 HOH A 107 618 160 HOH HOH . F 6 HOH A 108 619 162 HOH HOH . F 6 HOH A 109 620 163 HOH HOH . F 6 HOH A 110 621 164 HOH HOH . F 6 HOH A 111 622 168 HOH HOH . F 6 HOH A 112 623 170 HOH HOH . F 6 HOH A 113 624 171 HOH HOH . F 6 HOH A 114 625 173 HOH HOH . F 6 HOH A 115 626 175 HOH HOH . F 6 HOH A 116 627 177 HOH HOH . F 6 HOH A 117 628 179 HOH HOH . F 6 HOH A 118 629 186 HOH HOH . F 6 HOH A 119 630 190 HOH HOH . F 6 HOH A 120 631 191 HOH HOH . F 6 HOH A 121 632 195 HOH HOH . G 6 HOH B 1 502 13 HOH HOH . G 6 HOH B 2 503 21 HOH HOH . G 6 HOH B 3 504 32 HOH HOH . G 6 HOH B 4 505 45 HOH HOH . G 6 HOH B 5 506 47 HOH HOH . G 6 HOH B 6 507 48 HOH HOH . G 6 HOH B 7 508 50 HOH HOH . G 6 HOH B 8 509 56 HOH HOH . G 6 HOH B 9 510 59 HOH HOH . G 6 HOH B 10 511 66 HOH HOH . G 6 HOH B 11 512 67 HOH HOH . G 6 HOH B 12 513 68 HOH HOH . G 6 HOH B 13 514 73 HOH HOH . G 6 HOH B 14 515 76 HOH HOH . G 6 HOH B 15 516 83 HOH HOH . G 6 HOH B 16 517 85 HOH HOH . G 6 HOH B 17 518 86 HOH HOH . G 6 HOH B 18 519 87 HOH HOH . G 6 HOH B 19 520 96 HOH HOH . G 6 HOH B 20 521 97 HOH HOH . G 6 HOH B 21 522 98 HOH HOH . G 6 HOH B 22 523 102 HOH HOH . G 6 HOH B 23 524 104 HOH HOH . G 6 HOH B 24 525 105 HOH HOH . G 6 HOH B 25 526 106 HOH HOH . G 6 HOH B 26 527 109 HOH HOH . G 6 HOH B 27 528 110 HOH HOH . G 6 HOH B 28 529 111 HOH HOH . G 6 HOH B 29 530 113 HOH HOH . G 6 HOH B 30 531 114 HOH HOH . G 6 HOH B 31 532 126 HOH HOH . G 6 HOH B 32 533 127 HOH HOH . G 6 HOH B 33 534 133 HOH HOH . G 6 HOH B 34 535 138 HOH HOH . G 6 HOH B 35 536 139 HOH HOH . G 6 HOH B 36 537 141 HOH HOH . G 6 HOH B 37 538 144 HOH HOH . G 6 HOH B 38 539 149 HOH HOH . G 6 HOH B 39 540 154 HOH HOH . G 6 HOH B 40 541 155 HOH HOH . G 6 HOH B 41 542 156 HOH HOH . G 6 HOH B 42 543 157 HOH HOH . G 6 HOH B 43 544 161 HOH HOH . G 6 HOH B 44 545 165 HOH HOH . G 6 HOH B 45 546 166 HOH HOH . G 6 HOH B 46 547 167 HOH HOH . G 6 HOH B 47 548 169 HOH HOH . G 6 HOH B 48 549 172 HOH HOH . G 6 HOH B 49 550 174 HOH HOH . G 6 HOH B 50 551 178 HOH HOH . G 6 HOH B 51 552 180 HOH HOH . G 6 HOH B 52 553 183 HOH HOH . G 6 HOH B 53 554 184 HOH HOH . G 6 HOH B 54 555 187 HOH HOH . G 6 HOH B 55 556 188 HOH HOH . G 6 HOH B 56 557 189 HOH HOH . G 6 HOH B 57 558 192 HOH HOH . G 6 HOH B 58 559 193 HOH HOH . G 6 HOH B 59 560 194 HOH HOH . G 6 HOH B 60 561 196 HOH HOH . G 6 HOH B 61 562 197 HOH HOH . H 6 HOH C 1 101 34 HOH HOH . H 6 HOH C 2 102 40 HOH HOH . H 6 HOH C 3 103 41 HOH HOH . H 6 HOH C 4 104 53 HOH HOH . H 6 HOH C 5 105 72 HOH HOH . H 6 HOH C 6 106 79 HOH HOH . H 6 HOH C 7 107 80 HOH HOH . H 6 HOH C 8 108 108 HOH HOH . H 6 HOH C 9 109 120 HOH HOH . H 6 HOH C 10 110 129 HOH HOH . H 6 HOH C 11 111 150 HOH HOH . H 6 HOH C 12 112 176 HOH HOH . H 6 HOH C 13 113 181 HOH HOH . H 6 HOH C 14 114 182 HOH HOH . H 6 HOH C 15 115 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASN . . . D 4 33.176 43.667 43.159 1 37.33 ? N ASN 511 A 1 HETATM 2 C CA ASN . . . D 4 32.687 43.199 41.855 1 36.25 ? CA ASN 511 A 1 HETATM 3 C C ASN . . . D 4 32.914 44.379 40.937 1 34.7 ? C ASN 511 A 1 HETATM 4 O O ASN . . . D 4 33.387 45.534 41.158 1 32.7 ? O ASN 511 A 1 HETATM 5 C CB ASN . . . D 4 31.21 42.93 41.965 1 38.11 ? CB ASN 511 A 1 HETATM 6 C CG ASN . . . D 4 30.077 43.861 42.286 1 39.49 ? CG ASN 511 A 1 HETATM 7 O OD1 ASN . . . D 4 28.914 43.484 42.274 1 42.34 ? OD1 ASN 511 A 1 HETATM 8 N ND2 ASN . . . D 4 30.472 45.087 42.561 1 39.97 ? ND2 ASN 511 A 1 HETATM 9 O OXT ASN . . . D 4 32.528 44.026 39.751 1 34.95 ? OXT ASN 511 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #