data_2DQO # _model_server_result.job_id ekwlmY7jyaHDTjYtUowNIQ _model_server_result.datetime_utc '2025-02-27 02:30:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":102}' # _entry.id 2DQO # _exptl.entry_id 2DQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.327 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BARIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DQO _cell.length_a 51.4 _cell.length_b 51.4 _cell.length_c 44.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 1 A DC 1 1_555 A P OMU 2 A OMU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale2 A O3' OMU 2 A OMU 2 1_555 A P DC 3 A DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale3 A C5 OMU 2 A OMU 2 1_555 D C1Y CMY . A CMY 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.537 ? covale ? covale4 A O3' DT 4 A DT 4 1_555 A P OMU 5 A OMU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale5 A O3' OMU 5 A OMU 5 1_555 A P DC 6 A DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale6 A C5 OMU 5 A OMU 5 1_555 E C1Y CMY . A CMY 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.538 ? metalc ? metalc1 A OP2 OMU 5 A OMU 5 1_555 C NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc2 E O1Y CMY . A CMY 105 1_555 C NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc3 C NA NA . A NA 203 1_555 J O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc4 C NA NA . A NA 203 1_555 J O HOH . A HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc5 H NA NA . B NA 201 1_555 K O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc6 H NA NA . B NA 201 1_555 K O HOH . B HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc7 H NA NA . B NA 201 1_555 K O HOH . B HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc8 I NA NA . B NA 202 1_555 K O HOH . B HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 OMU 2 A OMU 2 1_555 B N1 A 8 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 OMU 2 A OMU 2 1_555 B N6 A 8 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DC 3 A DC 3 1_555 B N1 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 DC 3 A DC 3 1_555 B O6 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 DC 3 A DC 3 1_555 B N2 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT 4 1_555 B N1 A 6 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT 4 1_555 B N6 A 6 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 OMU 5 A OMU 5 1_555 B N1 A 5 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 OMU 5 A OMU 5 1_555 B N6 A 5 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 6 A DC 6 1_555 B N1 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 6 A DC 6 1_555 B O6 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 6 A DC 6 1_555 B N2 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 7 A DT 7 1_555 B N1 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 7 A DT 7 1_555 B N6 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 8 A DT 8 1_555 B N1 A 2 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 8 A DT 8 1_555 B N6 A 2 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DC 9 A DC 9 1_555 B N1 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N4 DC 9 A DC 9 1_555 B O6 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O2 DC 9 A DC 9 1_555 B N2 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ba 2' _chem_comp.formula_weight 137.327 _chem_comp.id BA _chem_comp.mon_nstd_flag . _chem_comp.name 'BARIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DQO _atom_sites.fract_transf_matrix[1][1] 0.019455 _atom_sites.fract_transf_matrix[1][2] 0.011232 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 203 3 NA NA1 . D 4 CMY A 1 102 2 CMY THY . E 4 CMY A 1 105 5 CMY THY . F 5 BA B 1 101 1 BA BA2 . G 5 BA B 1 102 2 BA BA2 . H 3 NA B 1 201 1 NA NA1 . I 3 NA B 1 202 2 NA NA1 . J 6 HOH A 1 204 1 HOH HOH . J 6 HOH A 2 205 7 HOH HOH . J 6 HOH A 3 206 9 HOH HOH . J 6 HOH A 4 207 10 HOH HOH . J 6 HOH A 5 208 18 HOH HOH . J 6 HOH A 6 209 21 HOH HOH . J 6 HOH A 7 210 22 HOH HOH . J 6 HOH A 8 211 23 HOH HOH . J 6 HOH A 9 212 27 HOH HOH . J 6 HOH A 10 213 29 HOH HOH . J 6 HOH A 11 214 30 HOH HOH . J 6 HOH A 12 215 31 HOH HOH . J 6 HOH A 13 216 32 HOH HOH . J 6 HOH A 14 217 34 HOH HOH . J 6 HOH A 15 218 35 HOH HOH . J 6 HOH A 16 219 39 HOH HOH . J 6 HOH A 17 220 41 HOH HOH . J 6 HOH A 18 221 42 HOH HOH . J 6 HOH A 19 222 45 HOH HOH . J 6 HOH A 20 223 46 HOH HOH . J 6 HOH A 21 224 47 HOH HOH . J 6 HOH A 22 225 48 HOH HOH . J 6 HOH A 23 226 49 HOH HOH . J 6 HOH A 24 227 50 HOH HOH . J 6 HOH A 25 228 51 HOH HOH . J 6 HOH A 26 229 52 HOH HOH . J 6 HOH A 27 230 53 HOH HOH . J 6 HOH A 28 231 55 HOH HOH . J 6 HOH A 29 232 56 HOH HOH . J 6 HOH A 30 233 58 HOH HOH . J 6 HOH A 31 234 59 HOH HOH . J 6 HOH A 32 235 60 HOH HOH . J 6 HOH A 33 236 62 HOH HOH . J 6 HOH A 34 237 63 HOH HOH . J 6 HOH A 35 238 64 HOH HOH . K 6 HOH B 1 203 2 HOH HOH . K 6 HOH B 2 204 3 HOH HOH . K 6 HOH B 3 205 4 HOH HOH . K 6 HOH B 4 206 5 HOH HOH . K 6 HOH B 5 207 6 HOH HOH . K 6 HOH B 6 208 8 HOH HOH . K 6 HOH B 7 209 11 HOH HOH . K 6 HOH B 8 210 12 HOH HOH . K 6 HOH B 9 211 13 HOH HOH . K 6 HOH B 10 212 14 HOH HOH . K 6 HOH B 11 213 15 HOH HOH . K 6 HOH B 12 214 16 HOH HOH . K 6 HOH B 13 215 17 HOH HOH . K 6 HOH B 14 216 19 HOH HOH . K 6 HOH B 15 217 20 HOH HOH . K 6 HOH B 16 218 24 HOH HOH . K 6 HOH B 17 219 25 HOH HOH . K 6 HOH B 18 220 26 HOH HOH . K 6 HOH B 19 221 28 HOH HOH . K 6 HOH B 20 222 33 HOH HOH . K 6 HOH B 21 223 36 HOH HOH . K 6 HOH B 22 224 37 HOH HOH . K 6 HOH B 23 225 38 HOH HOH . K 6 HOH B 24 226 40 HOH HOH . K 6 HOH B 25 227 43 HOH HOH . K 6 HOH B 26 228 44 HOH HOH . K 6 HOH B 27 229 54 HOH HOH . K 6 HOH B 28 230 57 HOH HOH . K 6 HOH B 29 231 61 HOH HOH . K 6 HOH B 30 232 65 HOH HOH . K 6 HOH B 31 233 66 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol BA _atom_site.label_atom_id BA _atom_site.label_comp_id BA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 31.683 _atom_site.Cartn_y -3.766 _atom_site.Cartn_z -4.811 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id BA _atom_site.auth_comp_id BA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 510 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #