data_2DQO # _model_server_result.job_id mwx02WPuJUkOgO_FyxvP6Q _model_server_result.datetime_utc '2025-02-27 02:45:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":105}' # _entry.id 2DQO # _exptl.entry_id 2DQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.214 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(6-AMINOHEXYL)CARBAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DQO _cell.length_a 51.4 _cell.length_b 51.4 _cell.length_c 44.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 1 A DC 1 1_555 A P OMU 2 A OMU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale2 A O3' OMU 2 A OMU 2 1_555 A P DC 3 A DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale3 A C5 OMU 2 A OMU 2 1_555 D C1Y CMY . A CMY 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.537 ? covale ? covale4 A O3' DT 4 A DT 4 1_555 A P OMU 5 A OMU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale5 A O3' OMU 5 A OMU 5 1_555 A P DC 6 A DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale6 A C5 OMU 5 A OMU 5 1_555 E C1Y CMY . A CMY 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.538 ? metalc ? metalc1 A OP2 OMU 5 A OMU 5 1_555 C NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc2 E O1Y CMY . A CMY 105 1_555 C NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc3 C NA NA . A NA 203 1_555 J O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc4 C NA NA . A NA 203 1_555 J O HOH . A HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc5 H NA NA . B NA 201 1_555 K O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc6 H NA NA . B NA 201 1_555 K O HOH . B HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc7 H NA NA . B NA 201 1_555 K O HOH . B HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc8 I NA NA . B NA 202 1_555 K O HOH . B HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 OMU 2 A OMU 2 1_555 B N1 A 8 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 OMU 2 A OMU 2 1_555 B N6 A 8 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DC 3 A DC 3 1_555 B N1 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 DC 3 A DC 3 1_555 B O6 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 DC 3 A DC 3 1_555 B N2 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT 4 1_555 B N1 A 6 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT 4 1_555 B N6 A 6 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 OMU 5 A OMU 5 1_555 B N1 A 5 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 OMU 5 A OMU 5 1_555 B N6 A 5 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 6 A DC 6 1_555 B N1 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 6 A DC 6 1_555 B O6 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 6 A DC 6 1_555 B N2 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 7 A DT 7 1_555 B N1 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 7 A DT 7 1_555 B N6 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 8 A DT 8 1_555 B N1 A 2 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 8 A DT 8 1_555 B N6 A 2 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DC 9 A DC 9 1_555 B N1 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N4 DC 9 A DC 9 1_555 B O6 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O2 DC 9 A DC 9 1_555 B N2 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C7 H16 N2 O2' _chem_comp.formula_weight 160.214 _chem_comp.id CMY _chem_comp.mon_nstd_flag . _chem_comp.name '(6-AMINOHEXYL)CARBAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1Y C1Y CMY sing 40 n n O1Y H1Y CMY sing 41 n n C1Y N1Y CMY sing 42 n n C1Y O1 CMY doub 43 n n N1Y C2Y CMY sing 44 n n N1Y H1 CMY sing 45 n n C2Y C3Y CMY sing 46 n n C2Y H2Y1 CMY sing 47 n n C2Y H2Y2 CMY sing 48 n n C3Y C4Y CMY sing 49 n n C3Y H3Y1 CMY sing 50 n n C3Y H3Y2 CMY sing 51 n n C4Y C5Y CMY sing 52 n n C4Y H4Y1 CMY sing 53 n n C4Y H4Y2 CMY sing 54 n n C5Y C6Y CMY sing 55 n n C5Y H5Y1 CMY sing 56 n n C5Y H5Y2 CMY sing 57 n n C6Y C7Y CMY sing 58 n n C6Y H6Y1 CMY sing 59 n n C6Y H6Y2 CMY sing 60 n n C7Y N2Y CMY sing 61 n n C7Y H7Y1 CMY sing 62 n n C7Y H7Y2 CMY sing 63 n n N2Y H11 CMY sing 64 n n N2Y H12 CMY sing 65 n n # _atom_sites.entry_id 2DQO _atom_sites.fract_transf_matrix[1][1] 0.019455 _atom_sites.fract_transf_matrix[1][2] 0.011232 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 203 3 NA NA1 . D 4 CMY A 1 102 2 CMY THY . E 4 CMY A 1 105 5 CMY THY . F 5 BA B 1 101 1 BA BA2 . G 5 BA B 1 102 2 BA BA2 . H 3 NA B 1 201 1 NA NA1 . I 3 NA B 1 202 2 NA NA1 . J 6 HOH A 1 204 1 HOH HOH . J 6 HOH A 2 205 7 HOH HOH . J 6 HOH A 3 206 9 HOH HOH . J 6 HOH A 4 207 10 HOH HOH . J 6 HOH A 5 208 18 HOH HOH . J 6 HOH A 6 209 21 HOH HOH . J 6 HOH A 7 210 22 HOH HOH . J 6 HOH A 8 211 23 HOH HOH . J 6 HOH A 9 212 27 HOH HOH . J 6 HOH A 10 213 29 HOH HOH . J 6 HOH A 11 214 30 HOH HOH . J 6 HOH A 12 215 31 HOH HOH . J 6 HOH A 13 216 32 HOH HOH . J 6 HOH A 14 217 34 HOH HOH . J 6 HOH A 15 218 35 HOH HOH . J 6 HOH A 16 219 39 HOH HOH . J 6 HOH A 17 220 41 HOH HOH . J 6 HOH A 18 221 42 HOH HOH . J 6 HOH A 19 222 45 HOH HOH . J 6 HOH A 20 223 46 HOH HOH . J 6 HOH A 21 224 47 HOH HOH . J 6 HOH A 22 225 48 HOH HOH . J 6 HOH A 23 226 49 HOH HOH . J 6 HOH A 24 227 50 HOH HOH . J 6 HOH A 25 228 51 HOH HOH . J 6 HOH A 26 229 52 HOH HOH . J 6 HOH A 27 230 53 HOH HOH . J 6 HOH A 28 231 55 HOH HOH . J 6 HOH A 29 232 56 HOH HOH . J 6 HOH A 30 233 58 HOH HOH . J 6 HOH A 31 234 59 HOH HOH . J 6 HOH A 32 235 60 HOH HOH . J 6 HOH A 33 236 62 HOH HOH . J 6 HOH A 34 237 63 HOH HOH . J 6 HOH A 35 238 64 HOH HOH . K 6 HOH B 1 203 2 HOH HOH . K 6 HOH B 2 204 3 HOH HOH . K 6 HOH B 3 205 4 HOH HOH . K 6 HOH B 4 206 5 HOH HOH . K 6 HOH B 5 207 6 HOH HOH . K 6 HOH B 6 208 8 HOH HOH . K 6 HOH B 7 209 11 HOH HOH . K 6 HOH B 8 210 12 HOH HOH . K 6 HOH B 9 211 13 HOH HOH . K 6 HOH B 10 212 14 HOH HOH . K 6 HOH B 11 213 15 HOH HOH . K 6 HOH B 12 214 16 HOH HOH . K 6 HOH B 13 215 17 HOH HOH . K 6 HOH B 14 216 19 HOH HOH . K 6 HOH B 15 217 20 HOH HOH . K 6 HOH B 16 218 24 HOH HOH . K 6 HOH B 17 219 25 HOH HOH . K 6 HOH B 18 220 26 HOH HOH . K 6 HOH B 19 221 28 HOH HOH . K 6 HOH B 20 222 33 HOH HOH . K 6 HOH B 21 223 36 HOH HOH . K 6 HOH B 22 224 37 HOH HOH . K 6 HOH B 23 225 38 HOH HOH . K 6 HOH B 24 226 40 HOH HOH . K 6 HOH B 25 227 43 HOH HOH . K 6 HOH B 26 228 44 HOH HOH . K 6 HOH B 27 229 54 HOH HOH . K 6 HOH B 28 230 57 HOH HOH . K 6 HOH B 29 231 61 HOH HOH . K 6 HOH B 30 232 65 HOH HOH . K 6 HOH B 31 233 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1Y CMY . . . E 4 17.757 -0.338 -0.558 1 30.14 ? O1Y CMY 105 A 1 HETATM 2 C C1Y CMY . . . E 4 18.809 0.297 -0.365 1 30.59 ? C1Y CMY 105 A 1 HETATM 3 N N1Y CMY . . . E 4 19.164 1.549 -1.088 1 30.44 ? N1Y CMY 105 A 1 HETATM 4 C C2Y CMY . . . E 4 18.094 1.932 -2.029 1 34.08 ? C2Y CMY 105 A 1 HETATM 5 C C3Y CMY . . . E 4 18.52 3.211 -2.755 1 38.67 ? C3Y CMY 105 A 1 HETATM 6 C C4Y CMY . . . E 4 17.416 3.639 -3.748 1 41.65 ? C4Y CMY 105 A 1 HETATM 7 C C5Y CMY . . . E 4 17.856 4.926 -4.496 1 43.76 ? C5Y CMY 105 A 1 HETATM 8 C C6Y CMY . . . E 4 18.101 6.077 -3.506 1 45.34 ? C6Y CMY 105 A 1 HETATM 9 C C7Y CMY . . . E 4 18.537 7.32 -4.296 1 47.84 ? C7Y CMY 105 A 1 HETATM 10 N N2Y CMY . . . E 4 18.778 8.435 -3.359 1 50.26 ? N2Y CMY 105 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #