data_2DQP # _model_server_result.job_id p91agwAzkkRs0xCZAKFz3Q _model_server_result.datetime_utc '2025-02-27 02:45:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 2DQP # _exptl.entry_id 2DQP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.214 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(6-AMINOHEXYL)CARBAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DQP _cell.length_a 52.24 _cell.length_b 52.24 _cell.length_c 42.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 1 A DC 1 1_555 A P OMU 2 A OMU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale2 A O3' OMU 2 A OMU 2 1_555 A P DC 3 A DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale3 A C5 OMU 2 A OMU 2 1_555 C C1Y CMY . A CMY 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.534 ? covale ? covale4 A O3' DT 4 A DT 4 1_555 A P OMU 5 A OMU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale5 A O3' OMU 5 A OMU 5 1_555 A P DC 6 A DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale6 A C5 OMU 5 A OMU 5 1_555 D C1Y CMY . A CMY 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.527 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 OMU 2 A OMU 2 1_555 B N1 A 8 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 OMU 2 A OMU 2 1_555 B N6 A 8 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DC 3 A DC 3 1_555 B N1 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 DC 3 A DC 3 1_555 B O6 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 DC 3 A DC 3 1_555 B N2 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT 4 1_555 B N1 A 6 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT 4 1_555 B N6 A 6 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 OMU 5 A OMU 5 1_555 B N1 A 5 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 OMU 5 A OMU 5 1_555 B N6 A 5 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 6 A DC 6 1_555 B N1 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 6 A DC 6 1_555 B O6 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 6 A DC 6 1_555 B N2 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 7 A DT 7 1_555 B N1 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 7 A DT 7 1_555 B N6 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 8 A DT 8 1_555 B N1 A 2 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 8 A DT 8 1_555 B N6 A 2 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DC 9 A DC 9 1_555 B N1 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N4 DC 9 A DC 9 1_555 B O6 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O2 DC 9 A DC 9 1_555 B N2 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C7 H16 N2 O2' _chem_comp.formula_weight 160.214 _chem_comp.id CMY _chem_comp.mon_nstd_flag . _chem_comp.name '(6-AMINOHEXYL)CARBAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1Y C1Y CMY sing 40 n n O1Y H1Y CMY sing 41 n n C1Y N1Y CMY sing 42 n n C1Y O1 CMY doub 43 n n N1Y C2Y CMY sing 44 n n N1Y H1 CMY sing 45 n n C2Y C3Y CMY sing 46 n n C2Y H2Y1 CMY sing 47 n n C2Y H2Y2 CMY sing 48 n n C3Y C4Y CMY sing 49 n n C3Y H3Y1 CMY sing 50 n n C3Y H3Y2 CMY sing 51 n n C4Y C5Y CMY sing 52 n n C4Y H4Y1 CMY sing 53 n n C4Y H4Y2 CMY sing 54 n n C5Y C6Y CMY sing 55 n n C5Y H5Y1 CMY sing 56 n n C5Y H5Y2 CMY sing 57 n n C6Y C7Y CMY sing 58 n n C6Y H6Y1 CMY sing 59 n n C6Y H6Y2 CMY sing 60 n n C7Y N2Y CMY sing 61 n n C7Y H7Y1 CMY sing 62 n n C7Y H7Y2 CMY sing 63 n n N2Y H11 CMY sing 64 n n N2Y H12 CMY sing 65 n n # _atom_sites.entry_id 2DQP _atom_sites.fract_transf_matrix[1][1] 0.019142 _atom_sites.fract_transf_matrix[1][2] 0.011052 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CMY A 1 102 2 CMY THY . D 3 CMY A 1 105 5 CMY THY . E 4 HOH A 1 106 1 HOH HOH . E 4 HOH A 2 107 4 HOH HOH . E 4 HOH A 3 108 5 HOH HOH . E 4 HOH A 4 109 6 HOH HOH . E 4 HOH A 5 110 8 HOH HOH . E 4 HOH A 6 111 9 HOH HOH . E 4 HOH A 7 112 12 HOH HOH . E 4 HOH A 8 113 13 HOH HOH . E 4 HOH A 9 114 15 HOH HOH . E 4 HOH A 10 115 16 HOH HOH . E 4 HOH A 11 116 17 HOH HOH . E 4 HOH A 12 117 19 HOH HOH . E 4 HOH A 13 118 20 HOH HOH . E 4 HOH A 14 119 25 HOH HOH . E 4 HOH A 15 120 27 HOH HOH . E 4 HOH A 16 121 29 HOH HOH . E 4 HOH A 17 122 32 HOH HOH . E 4 HOH A 18 123 33 HOH HOH . E 4 HOH A 19 124 35 HOH HOH . E 4 HOH A 20 125 37 HOH HOH . E 4 HOH A 21 126 38 HOH HOH . E 4 HOH A 22 127 39 HOH HOH . E 4 HOH A 23 128 40 HOH HOH . E 4 HOH A 24 129 41 HOH HOH . E 4 HOH A 25 130 42 HOH HOH . E 4 HOH A 26 131 44 HOH HOH . F 4 HOH B 1 19 2 HOH HOH . F 4 HOH B 2 20 3 HOH HOH . F 4 HOH B 3 21 7 HOH HOH . F 4 HOH B 4 22 10 HOH HOH . F 4 HOH B 5 23 11 HOH HOH . F 4 HOH B 6 24 14 HOH HOH . F 4 HOH B 7 25 18 HOH HOH . F 4 HOH B 8 26 21 HOH HOH . F 4 HOH B 9 27 22 HOH HOH . F 4 HOH B 10 28 23 HOH HOH . F 4 HOH B 11 29 24 HOH HOH . F 4 HOH B 12 30 26 HOH HOH . F 4 HOH B 13 31 28 HOH HOH . F 4 HOH B 14 32 30 HOH HOH . F 4 HOH B 15 33 31 HOH HOH . F 4 HOH B 16 34 34 HOH HOH . F 4 HOH B 17 35 36 HOH HOH . F 4 HOH B 18 36 43 HOH HOH . F 4 HOH B 19 37 45 HOH HOH . F 4 HOH B 20 38 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1Y CMY . . . C 3 26.521 3.461 -8.601 1 34.59 ? O1Y CMY 102 A 1 HETATM 2 C C1Y CMY . . . C 3 26.932 2.532 -7.886 1 33.35 ? C1Y CMY 102 A 1 HETATM 3 N N1Y CMY . . . C 3 28.032 2.668 -6.87 1 34.63 ? N1Y CMY 102 A 1 HETATM 4 C C2Y CMY . . . C 3 28.589 4.06 -6.786 1 37.23 ? C2Y CMY 102 A 1 HETATM 5 C C3Y CMY . . . C 3 27.498 5.069 -6.374 1 38.59 ? C3Y CMY 102 A 1 HETATM 6 C C4Y CMY . . . C 3 28.118 6.476 -6.302 0 37.74 ? C4Y CMY 102 A 1 HETATM 7 C C5Y CMY . . . C 3 27.046 7.509 -5.889 0 37.62 ? C5Y CMY 102 A 1 HETATM 8 C C6Y CMY . . . C 3 25.904 7.529 -6.919 0 37.36 ? C6Y CMY 102 A 1 HETATM 9 C C7Y CMY . . . C 3 24.859 8.559 -6.484 0 37.25 ? C7Y CMY 102 A 1 HETATM 10 N N2Y CMY . . . C 3 23.768 8.578 -7.468 0 37.14 ? N2Y CMY 102 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #