data_2DQQ
#
_model_server_result.job_id            UJkQQpSvFwsAFGM15oWdcg 
_model_server_result.datetime_utc      '2025-02-27 02:29:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dqq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":105}' 
#
_entry.id    2DQQ 
#
_exptl.entry_id    2DQQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              160.214 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(6-AMINOHEXYL)CARBAMIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2DQQ 
_cell.length_a            52.471 
_cell.length_b            52.471 
_cell.length_c            42.488 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DQQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' DC 1 A DC 1 1_555 A P OMU 2 A OMU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? 
covale ? covale2 A O3' OMU 2 A OMU 2 1_555 A P DC 3 A DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale3 A C5 OMU 2 A OMU 2 1_555 C C1Y CMY . A CMY 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.542 ? 
covale ? covale4 A O3' DT 4 A DT 4 1_555 A P OMU 5 A OMU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? 
covale ? covale5 A O3' OMU 5 A OMU 5 1_555 A P DC 6 A DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? 
covale ? covale6 A C5 OMU 5 A OMU 5 1_555 D C1Y CMY . A CMY 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 G 9 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 OMU 2 A OMU 2 1_555 B N1 A 8 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O4 OMU 2 A OMU 2 1_555 B N6 A 8 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N3 DC 3 A DC 3 1_555 B N1 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N4 DC 3 A DC 3 1_555 B O6 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O2 DC 3 A DC 3 1_555 B N2 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT 4 1_555 B N1 A 6 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT 4 1_555 B N6 A 6 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N3 OMU 5 A OMU 5 1_555 B N1 A 5 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O4 OMU 5 A OMU 5 1_555 B N6 A 5 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N3 DC 6 A DC 6 1_555 B N1 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N4 DC 6 A DC 6 1_555 B O6 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O2 DC 6 A DC 6 1_555 B N2 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N3 DT 7 A DT 7 1_555 B N1 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O4 DT 7 A DT 7 1_555 B N6 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N3 DT 8 A DT 8 1_555 B N1 A 2 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A O4 DT 8 A DT 8 1_555 B N6 A 2 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N3 DT 8 A DT 8 1_555 B N1 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A O4 DT 8 A DT 8 1_555 B N6 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N3 DC 9 A DC 9 1_555 B N1 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N4 DC 9 A DC 9 1_555 B O6 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A O2 DC 9 A DC 9 1_555 B N2 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C7 H16 N2 O2' 
_chem_comp.formula_weight    160.214 
_chem_comp.id                CMY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(6-AMINOHEXYL)CARBAMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1Y C1Y CMY sing 40 n n 
O1Y H1Y CMY sing 41 n n 
C1Y N1Y CMY sing 42 n n 
C1Y O1 CMY doub 43 n n 
N1Y C2Y CMY sing 44 n n 
N1Y H1 CMY sing 45 n n 
C2Y C3Y CMY sing 46 n n 
C2Y H2Y1 CMY sing 47 n n 
C2Y H2Y2 CMY sing 48 n n 
C3Y C4Y CMY sing 49 n n 
C3Y H3Y1 CMY sing 50 n n 
C3Y H3Y2 CMY sing 51 n n 
C4Y C5Y CMY sing 52 n n 
C4Y H4Y1 CMY sing 53 n n 
C4Y H4Y2 CMY sing 54 n n 
C5Y C6Y CMY sing 55 n n 
C5Y H5Y1 CMY sing 56 n n 
C5Y H5Y2 CMY sing 57 n n 
C6Y C7Y CMY sing 58 n n 
C6Y H6Y1 CMY sing 59 n n 
C6Y H6Y2 CMY sing 60 n n 
C7Y N2Y CMY sing 61 n n 
C7Y H7Y1 CMY sing 62 n n 
C7Y H7Y2 CMY sing 63 n n 
N2Y H11 CMY sing 64 n n 
N2Y H12 CMY sing 65 n n 
#
_atom_sites.entry_id                     2DQQ 
_atom_sites.fract_transf_matrix[1][1]    0.019058 
_atom_sites.fract_transf_matrix[1][2]    0.011003 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022006 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023536 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CMY A 1 102 2 CMY THY . 
D 3 CMY A 1 105 5 CMY THY . 
E 4 HOH A 1 106 2 HOH HOH . 
E 4 HOH A 2 107 3 HOH HOH . 
E 4 HOH A 3 108 4 HOH HOH . 
E 4 HOH A 4 109 5 HOH HOH . 
E 4 HOH A 5 110 7 HOH HOH . 
E 4 HOH A 6 111 13 HOH HOH . 
E 4 HOH A 7 112 15 HOH HOH . 
E 4 HOH A 8 113 16 HOH HOH . 
E 4 HOH A 9 114 20 HOH HOH . 
E 4 HOH A 10 115 21 HOH HOH . 
E 4 HOH A 11 116 26 HOH HOH . 
E 4 HOH A 12 117 29 HOH HOH . 
E 4 HOH A 13 118 32 HOH HOH . 
E 4 HOH A 14 119 33 HOH HOH . 
E 4 HOH A 15 120 35 HOH HOH . 
E 4 HOH A 16 121 36 HOH HOH . 
E 4 HOH A 17 122 37 HOH HOH . 
E 4 HOH A 18 123 40 HOH HOH . 
E 4 HOH A 19 124 48 HOH HOH . 
E 4 HOH A 20 125 49 HOH HOH . 
E 4 HOH A 21 126 50 HOH HOH . 
E 4 HOH A 22 127 51 HOH HOH . 
E 4 HOH A 23 128 52 HOH HOH . 
E 4 HOH A 24 129 53 HOH HOH . 
E 4 HOH A 25 130 58 HOH HOH . 
E 4 HOH A 26 131 60 HOH HOH . 
F 4 HOH B 1 19 1 HOH HOH . 
F 4 HOH B 2 20 6 HOH HOH . 
F 4 HOH B 3 21 8 HOH HOH . 
F 4 HOH B 4 22 9 HOH HOH . 
F 4 HOH B 5 23 10 HOH HOH . 
F 4 HOH B 6 24 11 HOH HOH . 
F 4 HOH B 7 25 12 HOH HOH . 
F 4 HOH B 8 26 14 HOH HOH . 
F 4 HOH B 9 27 17 HOH HOH . 
F 4 HOH B 10 28 18 HOH HOH . 
F 4 HOH B 11 29 19 HOH HOH . 
F 4 HOH B 12 30 22 HOH HOH . 
F 4 HOH B 13 31 23 HOH HOH . 
F 4 HOH B 14 32 24 HOH HOH . 
F 4 HOH B 15 33 25 HOH HOH . 
F 4 HOH B 16 34 27 HOH HOH . 
F 4 HOH B 17 35 28 HOH HOH . 
F 4 HOH B 18 36 30 HOH HOH . 
F 4 HOH B 19 37 31 HOH HOH . 
F 4 HOH B 20 38 34 HOH HOH . 
F 4 HOH B 21 39 38 HOH HOH . 
F 4 HOH B 22 40 39 HOH HOH . 
F 4 HOH B 23 41 41 HOH HOH . 
F 4 HOH B 24 42 42 HOH HOH . 
F 4 HOH B 25 43 43 HOH HOH . 
F 4 HOH B 26 44 44 HOH HOH . 
F 4 HOH B 27 45 45 HOH HOH . 
F 4 HOH B 28 46 46 HOH HOH . 
F 4 HOH B 29 47 47 HOH HOH . 
F 4 HOH B 30 48 54 HOH HOH . 
F 4 HOH B 31 49 55 HOH HOH . 
F 4 HOH B 32 50 56 HOH HOH . 
F 4 HOH B 33 51 57 HOH HOH . 
F 4 HOH B 34 52 59 HOH HOH . 
F 4 HOH B 35 53 61 HOH HOH . 
F 4 HOH B 36 54 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1Y CMY . . . D 3 8.403 16.166 0.394 1 32.89 ? O1Y CMY 105 A 1 
HETATM 2 C C1Y CMY . . . D 3 9.489 16.713 0.161 1 32.54 ? C1Y CMY 105 A 1 
HETATM 3 N N1Y CMY . . . D 3 10.795 16.299 0.794 1 35.98 ? N1Y CMY 105 A 1 
HETATM 4 C C2Y CMY . . . D 3 10.63 15.138 1.74 1 39.12 ? C2Y CMY 105 A 1 
HETATM 5 C C3Y CMY . . . D 3 10.083 13.895 1.004 1 45.99 ? C3Y CMY 105 A 1 
HETATM 6 C C4Y CMY . . . D 3 11.062 13.469 -0.108 1 50.41 ? C4Y CMY 105 A 1 
HETATM 7 C C5Y CMY . . . D 3 10.569 12.201 -0.925 1 53.73 ? C5Y CMY 105 A 1 
HETATM 8 C C6Y CMY . . . D 3 9.193 12.399 -1.695 1 56.44 ? C6Y CMY 105 A 1 
HETATM 9 C C7Y CMY . . . D 3 8.001 12.721 -0.77 1 57.34 ? C7Y CMY 105 A 1 
HETATM 10 N N2Y CMY . . . D 3 6.791 12.885 -1.588 1 59.37 ? N2Y CMY 105 A 1 
#
_model_server_stats.io_time_ms              4 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#