data_2DQV # _model_server_result.job_id Y0pQkMV5tVMbM-r1hRabEQ _model_server_result.datetime_utc '2024-11-15 05:28:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dqv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":688}' # _entry.id 2DQV # _exptl.entry_id 2DQV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.64 _cell.angle_gamma 90 _cell.entry_id 2DQV _cell.length_a 63.149 _cell.length_b 50.463 _cell.length_c 65.966 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DQV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA MAN C1 O1 . O4 HO4 . sing 5 ? 3 5 3 BMA MAN C1 O1 . O6 HO6 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 8 ? 4 4 3 BMA MAN C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG 3 n C NAG 1 C 1 NAG C 3 NAG 3 n C NAG 2 C 2 NAG C 4 NAG 3 n C MAN 3 C 3 MAN C 5 MAN 3 n C BMA 4 C 4 BMA C 6 MAN 3 n C BMA 5 C 5 BMA C 7 MAN 4 n D NAG 1 D 1 NAG D 8 NAG 4 n D NAG 2 D 2 NAG D 9 NAG 4 n D MAN 3 D 3 MAN D 10 MAN 4 n D BMA 4 D 4 BMA D 11 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 348 1_555 A SG CYS 39 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf2 A SG CYS 17 A CYS 358 1_555 A SG CYS 30 A CYS 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 64 A CYS 405 1_555 A SG CYS 343 A CYS 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 84 A CYS 425 1_555 A SG CYS 306 A CYS 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 116 A CYS 457 1_555 A SG CYS 191 A CYS 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 140 A CYS 481 1_555 A SG CYS 334 A CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 A SG CYS 150 A CYS 491 1_555 A SG CYS 164 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 A SG CYS 161 A CYS 502 1_555 A SG CYS 174 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 A SG CYS 232 A CYS 573 1_555 A SG CYS 246 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 A SG CYS 284 A CYS 625 1_555 A SG CYS 289 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 27 A ASN 368 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 A ND2 ASN 135 A ASN 476 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale3 A ND2 ASN 204 A ASN 545 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale7 C O4 MAN . C MAN 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 C O6 MAN . C MAN 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 D O4 NAG . D NAG 2 1_555 D C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale11 D O4 MAN . D MAN 3 1_555 D C1 BMA . D BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? metalc ? metalc1 A OD1 ASP 54 A ASP 395 1_555 F FE FE . A FE 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A OH TYR 92 A TYR 433 1_555 F FE FE . A FE 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 A OH TYR 185 A TYR 526 1_555 F FE FE . A FE 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc4 A NE2 HIS 247 A HIS 588 1_555 I ZN ZN . A ZN 3017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 A NE2 HIS 254 A HIS 595 1_555 F FE FE . A FE 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc6 A OE2 GLU 318 A GLU 659 1_555 H ZN ZN . A ZN 3016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc7 A OE1 GLU 318 A GLU 659 1_555 H ZN ZN . A ZN 3016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc8 F FE FE . A FE 688 1_555 G O1 CO3 . A CO3 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc9 F FE FE . A FE 688 1_555 G O2 CO3 . A CO3 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc10 I ZN ZN . A ZN 3017 1_555 K O HOH . A HOH 3145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DQV _atom_sites.fract_transf_matrix[1][1] 0.015836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005035 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GAL A 1 3015 3015 GAL GAL . F 6 FE A 1 688 688 FE FE . G 7 CO3 A 1 689 689 CO3 CO3 . H 8 ZN A 1 3016 401 ZN ZN . I 8 ZN A 1 3017 402 ZN ZN . J 9 SO4 A 1 3018 501 SO4 SO4 . K 10 HOH A 1 3019 1 HOH HOH . K 10 HOH A 2 3020 2 HOH HOH . K 10 HOH A 3 3021 3 HOH HOH . K 10 HOH A 4 3022 4 HOH HOH . K 10 HOH A 5 3023 5 HOH HOH . K 10 HOH A 6 3024 6 HOH HOH . K 10 HOH A 7 3025 7 HOH HOH . K 10 HOH A 8 3026 8 HOH HOH . K 10 HOH A 9 3027 9 HOH HOH . K 10 HOH A 10 3028 10 HOH HOH . K 10 HOH A 11 3029 11 HOH HOH . K 10 HOH A 12 3030 12 HOH HOH . K 10 HOH A 13 3031 13 HOH HOH . K 10 HOH A 14 3032 14 HOH HOH . K 10 HOH A 15 3033 15 HOH HOH . K 10 HOH A 16 3034 16 HOH HOH . K 10 HOH A 17 3035 17 HOH HOH . K 10 HOH A 18 3036 18 HOH HOH . K 10 HOH A 19 3037 19 HOH HOH . K 10 HOH A 20 3038 20 HOH HOH . K 10 HOH A 21 3039 21 HOH HOH . K 10 HOH A 22 3040 22 HOH HOH . K 10 HOH A 23 3041 23 HOH HOH . K 10 HOH A 24 3042 24 HOH HOH . K 10 HOH A 25 3043 25 HOH HOH . K 10 HOH A 26 3044 26 HOH HOH . K 10 HOH A 27 3045 27 HOH HOH . K 10 HOH A 28 3046 28 HOH HOH . K 10 HOH A 29 3047 29 HOH HOH . K 10 HOH A 30 3048 30 HOH HOH . K 10 HOH A 31 3049 31 HOH HOH . K 10 HOH A 32 3050 32 HOH HOH . K 10 HOH A 33 3051 33 HOH HOH . K 10 HOH A 34 3052 34 HOH HOH . K 10 HOH A 35 3053 35 HOH HOH . K 10 HOH A 36 3054 36 HOH HOH . K 10 HOH A 37 3055 37 HOH HOH . K 10 HOH A 38 3056 38 HOH HOH . K 10 HOH A 39 3057 39 HOH HOH . K 10 HOH A 40 3058 40 HOH HOH . K 10 HOH A 41 3059 41 HOH HOH . K 10 HOH A 42 3060 42 HOH HOH . K 10 HOH A 43 3061 43 HOH HOH . K 10 HOH A 44 3062 44 HOH HOH . K 10 HOH A 45 3063 45 HOH HOH . K 10 HOH A 46 3064 46 HOH HOH . K 10 HOH A 47 3065 47 HOH HOH . K 10 HOH A 48 3066 48 HOH HOH . K 10 HOH A 49 3067 49 HOH HOH . K 10 HOH A 50 3068 50 HOH HOH . K 10 HOH A 51 3069 51 HOH HOH . K 10 HOH A 52 3070 52 HOH HOH . K 10 HOH A 53 3071 53 HOH HOH . K 10 HOH A 54 3072 54 HOH HOH . K 10 HOH A 55 3073 55 HOH HOH . K 10 HOH A 56 3074 56 HOH HOH . K 10 HOH A 57 3075 57 HOH HOH . K 10 HOH A 58 3076 58 HOH HOH . K 10 HOH A 59 3077 59 HOH HOH . K 10 HOH A 60 3078 60 HOH HOH . K 10 HOH A 61 3079 61 HOH HOH . K 10 HOH A 62 3080 62 HOH HOH . K 10 HOH A 63 3081 63 HOH HOH . K 10 HOH A 64 3082 64 HOH HOH . K 10 HOH A 65 3083 65 HOH HOH . K 10 HOH A 66 3084 66 HOH HOH . K 10 HOH A 67 3085 67 HOH HOH . K 10 HOH A 68 3086 68 HOH HOH . K 10 HOH A 69 3087 69 HOH HOH . K 10 HOH A 70 3088 70 HOH HOH . K 10 HOH A 71 3089 71 HOH HOH . K 10 HOH A 72 3090 72 HOH HOH . K 10 HOH A 73 3091 73 HOH HOH . K 10 HOH A 74 3092 74 HOH HOH . K 10 HOH A 75 3093 75 HOH HOH . K 10 HOH A 76 3094 76 HOH HOH . K 10 HOH A 77 3095 77 HOH HOH . K 10 HOH A 78 3096 78 HOH HOH . K 10 HOH A 79 3097 79 HOH HOH . K 10 HOH A 80 3098 80 HOH HOH . K 10 HOH A 81 3099 81 HOH HOH . K 10 HOH A 82 3100 82 HOH HOH . K 10 HOH A 83 3101 83 HOH HOH . K 10 HOH A 84 3102 84 HOH HOH . K 10 HOH A 85 3103 85 HOH HOH . K 10 HOH A 86 3104 86 HOH HOH . K 10 HOH A 87 3105 87 HOH HOH . K 10 HOH A 88 3106 88 HOH HOH . K 10 HOH A 89 3107 89 HOH HOH . K 10 HOH A 90 3108 90 HOH HOH . K 10 HOH A 91 3109 91 HOH HOH . K 10 HOH A 92 3110 92 HOH HOH . K 10 HOH A 93 3111 93 HOH HOH . K 10 HOH A 94 3112 94 HOH HOH . K 10 HOH A 95 3113 95 HOH HOH . K 10 HOH A 96 3114 96 HOH HOH . K 10 HOH A 97 3115 97 HOH HOH . K 10 HOH A 98 3116 98 HOH HOH . K 10 HOH A 99 3117 99 HOH HOH . K 10 HOH A 100 3118 100 HOH HOH . K 10 HOH A 101 3119 101 HOH HOH . K 10 HOH A 102 3120 102 HOH HOH . K 10 HOH A 103 3121 103 HOH HOH . K 10 HOH A 104 3122 104 HOH HOH . K 10 HOH A 105 3123 105 HOH HOH . K 10 HOH A 106 3124 106 HOH HOH . K 10 HOH A 107 3125 107 HOH HOH . K 10 HOH A 108 3126 108 HOH HOH . K 10 HOH A 109 3127 109 HOH HOH . K 10 HOH A 110 3128 110 HOH HOH . K 10 HOH A 111 3129 111 HOH HOH . K 10 HOH A 112 3130 112 HOH HOH . K 10 HOH A 113 3131 113 HOH HOH . K 10 HOH A 114 3132 114 HOH HOH . K 10 HOH A 115 3133 115 HOH HOH . K 10 HOH A 116 3134 116 HOH HOH . K 10 HOH A 117 3135 117 HOH HOH . K 10 HOH A 118 3136 118 HOH HOH . K 10 HOH A 119 3137 119 HOH HOH . K 10 HOH A 120 3138 120 HOH HOH . K 10 HOH A 121 3139 121 HOH HOH . K 10 HOH A 122 3140 122 HOH HOH . K 10 HOH A 123 3141 123 HOH HOH . K 10 HOH A 124 3142 124 HOH HOH . K 10 HOH A 125 3143 125 HOH HOH . K 10 HOH A 126 3144 126 HOH HOH . K 10 HOH A 127 3145 127 HOH HOH . K 10 HOH A 128 3146 128 HOH HOH . K 10 HOH A 129 3147 129 HOH HOH . K 10 HOH A 130 3148 130 HOH HOH . K 10 HOH A 131 3149 131 HOH HOH . K 10 HOH A 132 3150 132 HOH HOH . K 10 HOH A 133 3151 133 HOH HOH . K 10 HOH A 134 3152 134 HOH HOH . K 10 HOH A 135 3153 135 HOH HOH . K 10 HOH A 136 3154 136 HOH HOH . K 10 HOH A 137 3155 137 HOH HOH . K 10 HOH A 138 3156 138 HOH HOH . K 10 HOH A 139 3157 139 HOH HOH . K 10 HOH A 140 3158 140 HOH HOH . K 10 HOH A 141 3159 141 HOH HOH . K 10 HOH A 142 3160 142 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 14.52 _atom_site.Cartn_y 2.136 _atom_site.Cartn_z 15.174 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 688 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #