data_2DR6
#
_model_server_result.job_id            lJEzksCBCMbeqXmOwKjaFw 
_model_server_result.datetime_utc      '2024-11-25 22:40:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dr6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2002}' 
#
_entry.id    2DR6 
#
_exptl.entry_id    2DR6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              543.519 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DOXORUBICIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.08 
_cell.angle_gamma         90 
_cell.entry_id            2DR6 
_cell.length_a            227.046 
_cell.length_b            134.561 
_cell.length_c            161.697 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DR6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H29 N O11' 
_chem_comp.formula_weight    543.519 
_chem_comp.id                DM2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DOXORUBICIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ADRIAMYCIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DM2 doub 83 n y 
C1 C20 DM2 sing 84 n y 
C1 H1 DM2 sing 85 n n 
C2 C3 DM2 sing 86 n y 
C2 H2 DM2 sing 87 n n 
C3 C4 DM2 doub 88 n y 
C3 H3 DM2 sing 89 n n 
C4 O4 DM2 sing 90 n n 
C4 C5 DM2 sing 91 n y 
O4 C21 DM2 sing 92 n n 
C5 C6 DM2 sing 93 n n 
C5 C20 DM2 doub 94 n y 
C6 O6 DM2 doub 95 n n 
C6 C7 DM2 sing 96 n n 
C7 C8 DM2 doub 97 n y 
C7 C18 DM2 sing 98 n y 
C8 O8 DM2 sing 99 n n 
C8 C9 DM2 sing 100 n y 
O8 HO8 DM2 sing 101 n n 
C9 C10 DM2 sing 102 n n 
C9 C16 DM2 doub 103 n y 
C10 O10 DM2 sing 104 n n 
C10 C11 DM2 sing 105 n n 
C10 H10 DM2 sing 106 n n 
O10 C1' DM2 sing 107 n n 
C11 C12 DM2 sing 108 n n 
C11 H111 DM2 sing 109 n n 
C11 H112 DM2 sing 110 n n 
C12 O12 DM2 sing 111 n n 
C12 C13 DM2 sing 112 n n 
C12 C15 DM2 sing 113 n n 
O12 HO12 DM2 sing 114 n n 
C13 O13 DM2 doub 115 n n 
C13 C14 DM2 sing 116 n n 
C14 O14 DM2 sing 117 n n 
C14 H141 DM2 sing 118 n n 
C14 H142 DM2 sing 119 n n 
O14 HO14 DM2 sing 120 n n 
C15 C16 DM2 sing 121 n n 
C15 H151 DM2 sing 122 n n 
C15 H152 DM2 sing 123 n n 
C16 C17 DM2 sing 124 n y 
C17 O17 DM2 sing 125 n n 
C17 C18 DM2 doub 126 n y 
O17 HO17 DM2 sing 127 n n 
C18 C19 DM2 sing 128 n n 
C19 O19 DM2 doub 129 n n 
C19 C20 DM2 sing 130 n n 
C21 H211 DM2 sing 131 n n 
C21 H212 DM2 sing 132 n n 
C21 H213 DM2 sing 133 n n 
C1' C2' DM2 sing 134 n n 
C1' O5' DM2 sing 135 n n 
C1' H1' DM2 sing 136 n n 
C2' C3' DM2 sing 137 n n 
C2' "H2'1" DM2 sing 138 n n 
C2' "H2'2" DM2 sing 139 n n 
C3' N3' DM2 sing 140 n n 
C3' C4' DM2 sing 141 n n 
C3' H3' DM2 sing 142 n n 
N3' "HN'1" DM2 sing 143 n n 
N3' "HN'2" DM2 sing 144 n n 
C4' O4' DM2 sing 145 n n 
C4' C5' DM2 sing 146 n n 
C4' H4' DM2 sing 147 n n 
O4' HO4' DM2 sing 148 n n 
C5' O5' DM2 sing 149 n n 
C5' C6' DM2 sing 150 n n 
C5' H5' DM2 sing 151 n n 
C6' "H6'1" DM2 sing 152 n n 
C6' "H6'2" DM2 sing 153 n n 
C6' "H6'3" DM2 sing 154 n n 
#
_atom_sites.entry_id                     2DR6 
_atom_sites.fract_transf_matrix[1][1]    0.004404 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000625 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007432 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006246 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           DM2 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      2002 
_pdbx_nonpoly_scheme.auth_seq_num     2002 
_pdbx_nonpoly_scheme.pdb_mon_id       DM2 
_pdbx_nonpoly_scheme.auth_mon_id      DM2 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DM2 . . . D 2 159.221 129.304 27.555 1 128.66 ? C1 DM2 2002 A 1 
HETATM 2 C C2 DM2 . . . D 2 158.263 128.517 27.629 1 128.78 ? C2 DM2 2002 A 1 
HETATM 3 C C3 DM2 . . . D 2 158.086 127.399 27.865 1 128.55 ? C3 DM2 2002 A 1 
HETATM 4 C C4 DM2 . . . D 2 158.737 126.49 28.394 1 128.07 ? C4 DM2 2002 A 1 
HETATM 5 O O4 DM2 . . . D 2 158.508 125.048 28.219 1 127.84 ? O4 DM2 2002 A 1 
HETATM 6 C C5 DM2 . . . D 2 160.05 127.159 28.887 1 128.39 ? C5 DM2 2002 A 1 
HETATM 7 C C6 DM2 . . . D 2 161.149 126.533 29.688 1 127.64 ? C6 DM2 2002 A 1 
HETATM 8 O O6 DM2 . . . D 2 160.975 125.345 30.092 1 128.82 ? O6 DM2 2002 A 1 
HETATM 9 C C7 DM2 . . . D 2 162.335 127.243 30.002 1 126.58 ? C7 DM2 2002 A 1 
HETATM 10 C C8 DM2 . . . D 2 163.255 126.569 30.758 1 127.69 ? C8 DM2 2002 A 1 
HETATM 11 O O8 DM2 . . . D 2 162.859 125.272 31.111 1 128.45 ? O8 DM2 2002 A 1 
HETATM 12 C C9 DM2 . . . D 2 164.59 127.255 31.114 1 128.46 ? C9 DM2 2002 A 1 
HETATM 13 C C10 DM2 . . . D 2 165.741 126.662 31.894 1 129.07 ? C10 DM2 2002 A 1 
HETATM 14 O O10 DM2 . . . D 2 166.259 125.531 31.128 1 135.48 ? O10 DM2 2002 A 1 
HETATM 15 C C11 DM2 . . . D 2 166.938 127.656 32.197 1 127.87 ? C11 DM2 2002 A 1 
HETATM 16 C C12 DM2 . . . D 2 167.295 128.709 31.094 1 123.51 ? C12 DM2 2002 A 1 
HETATM 17 O O12 DM2 . . . D 2 167.782 128.019 29.91 1 121.85 ? O12 DM2 2002 A 1 
HETATM 18 C C13 DM2 . . . D 2 168.259 129.788 31.547 1 118.19 ? C13 DM2 2002 A 1 
HETATM 19 O O13 DM2 . . . D 2 167.735 130.862 31.964 1 114.37 ? O13 DM2 2002 A 1 
HETATM 20 C C14 DM2 . . . D 2 169.762 129.392 31.41 1 113 ? C14 DM2 2002 A 1 
HETATM 21 O O14 DM2 . . . D 2 170.792 130.42 31.485 1 104.94 ? O14 DM2 2002 A 1 
HETATM 22 C C15 DM2 . . . D 2 166.06 129.557 30.842 1 126.42 ? C15 DM2 2002 A 1 
HETATM 23 C C16 DM2 . . . D 2 164.859 128.634 30.632 1 127.85 ? C16 DM2 2002 A 1 
HETATM 24 C C17 DM2 . . . D 2 163.917 129.22 29.934 1 128.52 ? C17 DM2 2002 A 1 
HETATM 25 O O17 DM2 . . . D 2 164.465 130.48 29.695 1 128.62 ? O17 DM2 2002 A 1 
HETATM 26 C C18 DM2 . . . D 2 162.654 128.549 29.604 1 128.3 ? C18 DM2 2002 A 1 
HETATM 27 C C19 DM2 . . . D 2 161.67 129.197 28.827 1 129.49 ? C19 DM2 2002 A 1 
HETATM 28 O O19 DM2 . . . D 2 161.974 130.355 28.47 1 131.75 ? O19 DM2 2002 A 1 
HETATM 29 C C20 DM2 . . . D 2 160.316 128.59 28.405 1 129.31 ? C20 DM2 2002 A 1 
HETATM 30 C C21 DM2 . . . D 2 157.861 124.557 27.044 1 126.62 ? C21 DM2 2002 A 1 
HETATM 31 C C1' DM2 . . . D 2 165.449 124.291 31.086 1 138.32 ? C1' DM2 2002 A 1 
HETATM 32 C C2' DM2 . . . D 2 164.811 124.055 29.677 1 137.28 ? C2' DM2 2002 A 1 
HETATM 33 C C3' DM2 . . . D 2 165.706 123.201 28.794 1 137.01 ? C3' DM2 2002 A 1 
HETATM 34 N N3' DM2 . . . D 2 165.08 123.089 27.46 1 135.36 ? N3' DM2 2002 A 1 
HETATM 35 C C4' DM2 . . . D 2 166.053 121.916 29.644 1 137.37 ? C4' DM2 2002 A 1 
HETATM 36 O O4' DM2 . . . D 2 166.562 120.806 28.877 1 138.02 ? O4' DM2 2002 A 1 
HETATM 37 C C5' DM2 . . . D 2 166.945 122.3 30.894 1 137.91 ? C5' DM2 2002 A 1 
HETATM 38 O O5' DM2 . . . D 2 166.087 123.108 31.727 1 140.42 ? O5' DM2 2002 A 1 
HETATM 39 C C6' DM2 . . . D 2 167.697 121.289 31.807 1 135.27 ? C6' DM2 2002 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    122 
_model_server_stats.query_time_ms           477 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           39 
#