data_2DRC # _model_server_result.job_id 9SsVZg7JeH999MeADjYcTA _model_server_result.datetime_utc '2024-11-04 22:54:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2drc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":161}' # _entry.id 2DRC # _exptl.entry_id 2DRC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DRC _cell.length_a 92.99 _cell.length_b 92.99 _cell.length_c 73.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DRC _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 135 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 135 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 620 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.337 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 237 n y N1 C8A MTX sing 238 n y C2 NA2 MTX sing 239 n n C2 N3 MTX sing 240 n y NA2 HN21 MTX sing 241 n n NA2 HN22 MTX sing 242 n n N3 C4 MTX doub 243 n y C4 NA4 MTX sing 244 n n C4 C4A MTX sing 245 n y NA4 HN41 MTX sing 246 n n NA4 HN42 MTX sing 247 n n C4A N5 MTX sing 248 n y C4A C8A MTX doub 249 n y N5 C6 MTX doub 250 n y C6 C7 MTX sing 251 n y C6 C9 MTX sing 252 n n C7 N8 MTX doub 253 n y C7 H7 MTX sing 254 n n N8 C8A MTX sing 255 n y C9 N10 MTX sing 256 n n C9 H91 MTX sing 257 n n C9 H92 MTX sing 258 n n N10 CM MTX sing 259 n n N10 C14 MTX sing 260 n n CM HM1 MTX sing 261 n n CM HM2 MTX sing 262 n n CM HM3 MTX sing 263 n n C11 C12 MTX doub 264 n y C11 C16 MTX sing 265 n y C11 C MTX sing 266 n n C12 C13 MTX sing 267 n y C12 H12 MTX sing 268 n n C13 C14 MTX doub 269 n y C13 H13 MTX sing 270 n n C14 C15 MTX sing 271 n y C15 C16 MTX doub 272 n y C15 H15 MTX sing 273 n n C16 H16 MTX sing 274 n n C O MTX doub 275 n n C N MTX sing 276 n n N CA MTX sing 277 n n N HN MTX sing 278 n n CA CT MTX sing 279 n n CA CB MTX sing 280 n n CA HA MTX sing 281 n n CT O1 MTX doub 282 n n CT O2 MTX sing 283 n n O2 HO2 MTX sing 284 n n CB CG MTX sing 285 n n CB HB1 MTX sing 286 n n CB HB2 MTX sing 287 n n CG CD MTX sing 288 n n CG HG1 MTX sing 289 n n CG HG2 MTX sing 290 n n CD OE1 MTX doub 291 n n CD OE2 MTX sing 292 n n OE2 HOE2 MTX sing 293 n n # _atom_sites.entry_id 2DRC _atom_sites.fract_transf_matrix[1][1] 0.010754 _atom_sites.fract_transf_matrix[1][2] 0.006209 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 401 401 CL CL . D 3 MTX A 1 161 161 MTX MTX . E 2 CL B 1 605 605 CL CL . F 4 CA B 1 620 620 CA CA . G 3 MTX B 1 161 161 MTX MTX . H 5 HOH A 1 402 433 HOH HOH . H 5 HOH A 2 403 438 HOH HOH . H 5 HOH A 3 404 440 HOH HOH . H 5 HOH A 4 405 442 HOH HOH . H 5 HOH A 5 406 456 HOH HOH . H 5 HOH A 6 407 459 HOH HOH . H 5 HOH A 7 408 460 HOH HOH . H 5 HOH A 8 409 465 HOH HOH . H 5 HOH A 9 410 466 HOH HOH . H 5 HOH A 10 411 468 HOH HOH . H 5 HOH A 11 412 478 HOH HOH . H 5 HOH A 12 413 502 HOH HOH . H 5 HOH A 13 414 511 HOH HOH . H 5 HOH A 14 415 529 HOH HOH . H 5 HOH A 15 416 531 HOH HOH . H 5 HOH A 16 417 534 HOH HOH . H 5 HOH A 17 418 535 HOH HOH . H 5 HOH A 18 419 536 HOH HOH . H 5 HOH A 19 420 545 HOH HOH . H 5 HOH A 20 421 547 HOH HOH . H 5 HOH A 21 422 557 HOH HOH . H 5 HOH A 22 423 559 HOH HOH . H 5 HOH A 23 424 561 HOH HOH . H 5 HOH A 24 425 574 HOH HOH . H 5 HOH A 25 426 579 HOH HOH . H 5 HOH A 26 427 583 HOH HOH . H 5 HOH A 27 428 585 HOH HOH . H 5 HOH A 28 429 860 HOH HOH . H 5 HOH A 29 430 861 HOH HOH . H 5 HOH A 30 431 862 HOH HOH . H 5 HOH A 31 432 865 HOH HOH . H 5 HOH A 32 433 879 HOH HOH . H 5 HOH A 33 434 612 HOH HOH . I 5 HOH B 1 621 638 HOH HOH . I 5 HOH B 2 622 640 HOH HOH . I 5 HOH B 3 623 658 HOH HOH . I 5 HOH B 4 624 709 HOH HOH . I 5 HOH B 5 625 714 HOH HOH . I 5 HOH B 6 626 726 HOH HOH . I 5 HOH B 7 627 748 HOH HOH . I 5 HOH B 8 628 750 HOH HOH . I 5 HOH B 9 629 756 HOH HOH . I 5 HOH B 10 630 757 HOH HOH . I 5 HOH B 11 631 758 HOH HOH . I 5 HOH B 12 632 764 HOH HOH . I 5 HOH B 13 633 777 HOH HOH . I 5 HOH B 14 634 782 HOH HOH . I 5 HOH B 15 635 799 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . D 3 23.023 58.446 24.32 1 10.2 ? N1 MTX 161 A 1 HETATM 2 C C2 MTX . . . D 3 23.623 58.007 23.183 1 11.17 ? C2 MTX 161 A 1 HETATM 3 N NA2 MTX . . . D 3 24.892 57.981 23.123 1 12.6 ? NA2 MTX 161 A 1 HETATM 4 N N3 MTX . . . D 3 22.872 57.611 22.163 1 11.08 ? N3 MTX 161 A 1 HETATM 5 C C4 MTX . . . D 3 21.491 57.598 22.013 1 10 ? C4 MTX 161 A 1 HETATM 6 N NA4 MTX . . . D 3 20.832 57.165 20.916 1 12.69 ? NA4 MTX 161 A 1 HETATM 7 C C4A MTX . . . D 3 20.884 58.109 23.253 1 9.6 ? C4A MTX 161 A 1 HETATM 8 N N5 MTX . . . D 3 19.633 58.289 23.196 1 11.8 ? N5 MTX 161 A 1 HETATM 9 C C6 MTX . . . D 3 19.003 58.743 24.3 1 8.99 ? C6 MTX 161 A 1 HETATM 10 C C7 MTX . . . D 3 19.769 59.028 25.517 1 12.17 ? C7 MTX 161 A 1 HETATM 11 N N8 MTX . . . D 3 21.154 58.871 25.473 1 15.53 ? N8 MTX 161 A 1 HETATM 12 C C8A MTX . . . D 3 21.629 58.421 24.297 1 14.72 ? C8A MTX 161 A 1 HETATM 13 C C9 MTX . . . D 3 17.528 58.939 24.254 1 9.66 ? C9 MTX 161 A 1 HETATM 14 N N10 MTX . . . D 3 16.95 59.711 25.479 1 13.81 ? N10 MTX 161 A 1 HETATM 15 C CM MTX . . . D 3 16.093 59.084 26.623 1 15.33 ? CM MTX 161 A 1 HETATM 16 C C11 MTX . . . D 3 18.004 63.846 25.743 1 14.74 ? C11 MTX 161 A 1 HETATM 17 C C12 MTX . . . D 3 17.242 63.236 26.664 1 15.33 ? C12 MTX 161 A 1 HETATM 18 C C13 MTX . . . D 3 16.858 61.816 26.578 1 19.84 ? C13 MTX 161 A 1 HETATM 19 C C14 MTX . . . D 3 17.314 61.125 25.522 1 13.58 ? C14 MTX 161 A 1 HETATM 20 C C15 MTX . . . D 3 18.173 61.804 24.501 1 10.18 ? C15 MTX 161 A 1 HETATM 21 C C16 MTX . . . D 3 18.499 63.028 24.597 1 9.44 ? C16 MTX 161 A 1 HETATM 22 C C MTX . . . D 3 18.324 65.352 25.822 1 22.7 ? C MTX 161 A 1 HETATM 23 O O MTX . . . D 3 17.588 66.076 26.576 1 19.35 ? O MTX 161 A 1 HETATM 24 N N MTX . . . D 3 19.296 65.869 25.064 1 17.38 ? N MTX 161 A 1 HETATM 25 C CA MTX . . . D 3 19.726 67.323 25.08 1 14.77 ? CA MTX 161 A 1 HETATM 26 C CT MTX . . . D 3 19.991 67.448 23.568 1 17.38 ? CT MTX 161 A 1 HETATM 27 O O1 MTX . . . D 3 20.336 66.402 22.798 1 11.13 ? O1 MTX 161 A 1 HETATM 28 O O2 MTX . . . D 3 19.872 68.583 23.095 1 17.92 ? O2 MTX 161 A 1 HETATM 29 C CB MTX . . . D 3 21.065 67.502 25.828 1 13.95 ? CB MTX 161 A 1 HETATM 30 C CG MTX . . . D 3 21.049 67.383 27.347 1 27.31 ? CG MTX 161 A 1 HETATM 31 C CD MTX . . . D 3 19.862 68.473 27.94 1 48.35 ? CD MTX 161 A 1 HETATM 32 O OE1 MTX . . . D 3 19.326 68.154 29.338 1 55.89 ? OE1 MTX 161 A 1 HETATM 33 O OE2 MTX . . . D 3 19.457 69.385 27.318 1 52.62 ? OE2 MTX 161 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #