data_2DRI # _model_server_result.job_id CUqmHAZUmYQPuOatiHwlkQ _model_server_result.datetime_utc '2024-10-11 06:17:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":272}' # _entry.id 2DRI # _exptl.entry_id 2DRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-ribopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DRI _cell.length_a 74.92 _cell.length_b 88.99 _cell.length_c 40.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id RIP _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-ribopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'beta-D-ribose;D-ribose;ribose;RIBOSE(PYRANOSE FORM)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RIP sing 264 n n C1 O1 RIP sing 265 n n C1 O5 RIP sing 266 n n C1 H1 RIP sing 267 n n C2 C3 RIP sing 268 n n C2 O2 RIP sing 269 n n C2 H2 RIP sing 270 n n C3 C4 RIP sing 271 n n C3 O3 RIP sing 272 n n C3 H3 RIP sing 273 n n C4 C5 RIP sing 274 n n C4 O4 RIP sing 275 n n C4 H4 RIP sing 276 n n C5 O5 RIP sing 277 n n C5 H51 RIP sing 278 n n C5 H52 RIP sing 279 n n O1 HO1 RIP sing 280 n n O2 HO2 RIP sing 281 n n O3 HO3 RIP sing 282 n n O4 HO4 RIP sing 283 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version RIP DRibpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 RIP b-D-ribopyranose 'COMMON NAME' GMML 1 RIP b-D-Ribp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 RIP Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2DRI _atom_sites.fract_transf_matrix[1][1] 0.013348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RIP A 1 272 1 RIP RIP . C 3 HOH A 1 273 1 HOH HOH . C 3 HOH A 2 274 2 HOH HOH . C 3 HOH A 3 275 3 HOH HOH . C 3 HOH A 4 276 4 HOH HOH . C 3 HOH A 5 277 5 HOH HOH . C 3 HOH A 6 278 6 HOH HOH . C 3 HOH A 7 279 7 HOH HOH . C 3 HOH A 8 280 8 HOH HOH . C 3 HOH A 9 281 9 HOH HOH . C 3 HOH A 10 282 10 HOH HOH . C 3 HOH A 11 283 11 HOH HOH . C 3 HOH A 12 284 12 HOH HOH . C 3 HOH A 13 285 13 HOH HOH . C 3 HOH A 14 286 14 HOH HOH . C 3 HOH A 15 287 15 HOH HOH . C 3 HOH A 16 288 16 HOH HOH . C 3 HOH A 17 289 17 HOH HOH . C 3 HOH A 18 290 18 HOH HOH . C 3 HOH A 19 291 19 HOH HOH . C 3 HOH A 20 292 20 HOH HOH . C 3 HOH A 21 293 21 HOH HOH . C 3 HOH A 22 294 22 HOH HOH . C 3 HOH A 23 295 23 HOH HOH . C 3 HOH A 24 296 24 HOH HOH . C 3 HOH A 25 297 25 HOH HOH . C 3 HOH A 26 298 26 HOH HOH . C 3 HOH A 27 299 27 HOH HOH . C 3 HOH A 28 300 28 HOH HOH . C 3 HOH A 29 301 29 HOH HOH . C 3 HOH A 30 302 30 HOH HOH . C 3 HOH A 31 303 31 HOH HOH . C 3 HOH A 32 304 32 HOH HOH . C 3 HOH A 33 305 33 HOH HOH . C 3 HOH A 34 306 34 HOH HOH . C 3 HOH A 35 307 35 HOH HOH . C 3 HOH A 36 308 36 HOH HOH . C 3 HOH A 37 309 37 HOH HOH . C 3 HOH A 38 310 38 HOH HOH . C 3 HOH A 39 311 39 HOH HOH . C 3 HOH A 40 312 40 HOH HOH . C 3 HOH A 41 313 41 HOH HOH . C 3 HOH A 42 314 42 HOH HOH . C 3 HOH A 43 315 43 HOH HOH . C 3 HOH A 44 316 44 HOH HOH . C 3 HOH A 45 317 45 HOH HOH . C 3 HOH A 46 318 46 HOH HOH . C 3 HOH A 47 319 47 HOH HOH . C 3 HOH A 48 320 48 HOH HOH . C 3 HOH A 49 321 49 HOH HOH . C 3 HOH A 50 322 50 HOH HOH . C 3 HOH A 51 323 51 HOH HOH . C 3 HOH A 52 324 52 HOH HOH . C 3 HOH A 53 325 53 HOH HOH . C 3 HOH A 54 326 54 HOH HOH . C 3 HOH A 55 327 55 HOH HOH . C 3 HOH A 56 328 56 HOH HOH . C 3 HOH A 57 329 57 HOH HOH . C 3 HOH A 58 330 58 HOH HOH . C 3 HOH A 59 331 59 HOH HOH . C 3 HOH A 60 332 60 HOH HOH . C 3 HOH A 61 333 61 HOH HOH . C 3 HOH A 62 334 62 HOH HOH . C 3 HOH A 63 335 63 HOH HOH . C 3 HOH A 64 336 64 HOH HOH . C 3 HOH A 65 337 65 HOH HOH . C 3 HOH A 66 338 66 HOH HOH . C 3 HOH A 67 339 67 HOH HOH . C 3 HOH A 68 340 68 HOH HOH . C 3 HOH A 69 341 69 HOH HOH . C 3 HOH A 70 342 70 HOH HOH . C 3 HOH A 71 343 71 HOH HOH . C 3 HOH A 72 344 72 HOH HOH . C 3 HOH A 73 345 73 HOH HOH . C 3 HOH A 74 346 74 HOH HOH . C 3 HOH A 75 347 75 HOH HOH . C 3 HOH A 76 348 76 HOH HOH . C 3 HOH A 77 349 77 HOH HOH . C 3 HOH A 78 350 78 HOH HOH . C 3 HOH A 79 351 79 HOH HOH . C 3 HOH A 80 352 80 HOH HOH . C 3 HOH A 81 353 81 HOH HOH . C 3 HOH A 82 354 82 HOH HOH . C 3 HOH A 83 355 83 HOH HOH . C 3 HOH A 84 356 84 HOH HOH . C 3 HOH A 85 357 85 HOH HOH . C 3 HOH A 86 358 86 HOH HOH . C 3 HOH A 87 359 87 HOH HOH . C 3 HOH A 88 360 88 HOH HOH . C 3 HOH A 89 361 89 HOH HOH . C 3 HOH A 90 362 90 HOH HOH . C 3 HOH A 91 363 91 HOH HOH . C 3 HOH A 92 364 92 HOH HOH . C 3 HOH A 93 365 93 HOH HOH . C 3 HOH A 94 366 94 HOH HOH . C 3 HOH A 95 367 95 HOH HOH . C 3 HOH A 96 368 96 HOH HOH . C 3 HOH A 97 369 97 HOH HOH . C 3 HOH A 98 370 98 HOH HOH . C 3 HOH A 99 371 99 HOH HOH . C 3 HOH A 100 372 100 HOH HOH . C 3 HOH A 101 373 101 HOH HOH . C 3 HOH A 102 374 102 HOH HOH . C 3 HOH A 103 375 103 HOH HOH . C 3 HOH A 104 376 104 HOH HOH . C 3 HOH A 105 377 105 HOH HOH . C 3 HOH A 106 378 106 HOH HOH . C 3 HOH A 107 379 107 HOH HOH . C 3 HOH A 108 380 108 HOH HOH . C 3 HOH A 109 381 109 HOH HOH . C 3 HOH A 110 382 110 HOH HOH . C 3 HOH A 111 383 111 HOH HOH . C 3 HOH A 112 384 112 HOH HOH . C 3 HOH A 113 385 113 HOH HOH . C 3 HOH A 114 386 114 HOH HOH . C 3 HOH A 115 387 115 HOH HOH . C 3 HOH A 116 388 116 HOH HOH . C 3 HOH A 117 389 117 HOH HOH . C 3 HOH A 118 390 118 HOH HOH . C 3 HOH A 119 391 119 HOH HOH . C 3 HOH A 120 392 120 HOH HOH . C 3 HOH A 121 393 121 HOH HOH . C 3 HOH A 122 394 122 HOH HOH . C 3 HOH A 123 395 123 HOH HOH . C 3 HOH A 124 396 124 HOH HOH . C 3 HOH A 125 397 125 HOH HOH . C 3 HOH A 126 398 126 HOH HOH . C 3 HOH A 127 399 127 HOH HOH . C 3 HOH A 128 400 128 HOH HOH . C 3 HOH A 129 401 129 HOH HOH . C 3 HOH A 130 402 130 HOH HOH . C 3 HOH A 131 403 131 HOH HOH . C 3 HOH A 132 404 132 HOH HOH . C 3 HOH A 133 405 133 HOH HOH . C 3 HOH A 134 406 134 HOH HOH . C 3 HOH A 135 407 135 HOH HOH . C 3 HOH A 136 408 136 HOH HOH . C 3 HOH A 137 409 137 HOH HOH . C 3 HOH A 138 410 138 HOH HOH . C 3 HOH A 139 411 139 HOH HOH . C 3 HOH A 140 412 140 HOH HOH . C 3 HOH A 141 413 141 HOH HOH . C 3 HOH A 142 414 142 HOH HOH . C 3 HOH A 143 415 143 HOH HOH . C 3 HOH A 144 416 144 HOH HOH . C 3 HOH A 145 417 145 HOH HOH . C 3 HOH A 146 418 146 HOH HOH . C 3 HOH A 147 419 147 HOH HOH . C 3 HOH A 148 420 148 HOH HOH . C 3 HOH A 149 421 149 HOH HOH . C 3 HOH A 150 422 150 HOH HOH . C 3 HOH A 151 423 151 HOH HOH . C 3 HOH A 152 424 152 HOH HOH . C 3 HOH A 153 425 153 HOH HOH . C 3 HOH A 154 426 154 HOH HOH . C 3 HOH A 155 427 155 HOH HOH . C 3 HOH A 156 428 156 HOH HOH . C 3 HOH A 157 429 157 HOH HOH . C 3 HOH A 158 430 158 HOH HOH . C 3 HOH A 159 431 159 HOH HOH . C 3 HOH A 160 432 160 HOH HOH . C 3 HOH A 161 433 161 HOH HOH . C 3 HOH A 162 434 162 HOH HOH . C 3 HOH A 163 435 163 HOH HOH . C 3 HOH A 164 436 164 HOH HOH . C 3 HOH A 165 437 165 HOH HOH . C 3 HOH A 166 438 166 HOH HOH . C 3 HOH A 167 439 167 HOH HOH . C 3 HOH A 168 440 168 HOH HOH . C 3 HOH A 169 441 169 HOH HOH . C 3 HOH A 170 442 170 HOH HOH . C 3 HOH A 171 443 171 HOH HOH . C 3 HOH A 172 444 172 HOH HOH . C 3 HOH A 173 445 173 HOH HOH . C 3 HOH A 174 446 174 HOH HOH . C 3 HOH A 175 447 175 HOH HOH . C 3 HOH A 176 448 176 HOH HOH . C 3 HOH A 177 449 177 HOH HOH . C 3 HOH A 178 450 178 HOH HOH . C 3 HOH A 179 451 179 HOH HOH . C 3 HOH A 180 452 180 HOH HOH . C 3 HOH A 181 453 181 HOH HOH . C 3 HOH A 182 454 182 HOH HOH . C 3 HOH A 183 455 183 HOH HOH . C 3 HOH A 184 456 184 HOH HOH . C 3 HOH A 185 457 185 HOH HOH . C 3 HOH A 186 458 186 HOH HOH . C 3 HOH A 187 459 187 HOH HOH . C 3 HOH A 188 460 188 HOH HOH . C 3 HOH A 189 461 189 HOH HOH . C 3 HOH A 190 462 190 HOH HOH . C 3 HOH A 191 463 191 HOH HOH . C 3 HOH A 192 464 192 HOH HOH . C 3 HOH A 193 465 193 HOH HOH . C 3 HOH A 194 466 194 HOH HOH . C 3 HOH A 195 467 195 HOH HOH . C 3 HOH A 196 468 196 HOH HOH . C 3 HOH A 197 469 197 HOH HOH . C 3 HOH A 198 470 198 HOH HOH . C 3 HOH A 199 471 199 HOH HOH . C 3 HOH A 200 472 200 HOH HOH . C 3 HOH A 201 473 201 HOH HOH . C 3 HOH A 202 474 202 HOH HOH . C 3 HOH A 203 475 203 HOH HOH . C 3 HOH A 204 476 204 HOH HOH . C 3 HOH A 205 477 205 HOH HOH . C 3 HOH A 206 478 206 HOH HOH . C 3 HOH A 207 479 207 HOH HOH . C 3 HOH A 208 480 208 HOH HOH . C 3 HOH A 209 481 209 HOH HOH . C 3 HOH A 210 482 210 HOH HOH . C 3 HOH A 211 483 211 HOH HOH . C 3 HOH A 212 484 212 HOH HOH . C 3 HOH A 213 485 213 HOH HOH . C 3 HOH A 214 486 214 HOH HOH . C 3 HOH A 215 487 215 HOH HOH . C 3 HOH A 216 488 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RIP . . . B 2 50.144 33.6 44.156 1 11.38 ? C1 RIP 272 A 1 HETATM 2 C C2 RIP . . . B 2 49.458 33.088 45.419 1 9.35 ? C2 RIP 272 A 1 HETATM 3 C C3 RIP . . . B 2 49.081 34.265 46.328 1 11.07 ? C3 RIP 272 A 1 HETATM 4 C C4 RIP . . . B 2 50.333 35.11 46.608 1 9.82 ? C4 RIP 272 A 1 HETATM 5 C C5 RIP . . . B 2 50.973 35.53 45.293 1 11.01 ? C5 RIP 272 A 1 HETATM 6 O O1 RIP . . . B 2 50.554 32.541 43.329 1 10.33 ? O1 RIP 272 A 1 HETATM 7 O O2 RIP . . . B 2 48.301 32.361 45.08 1 8.6 ? O2 RIP 272 A 1 HETATM 8 O O3 RIP . . . B 2 48.078 35.05 45.686 1 8.94 ? O3 RIP 272 A 1 HETATM 9 O O4 RIP . . . B 2 50.013 36.251 47.37 1 8.99 ? O4 RIP 272 A 1 HETATM 10 O O5 RIP . . . B 2 51.283 34.37 44.511 1 11.24 ? O5 RIP 272 A 1 HETATM 11 H H1 RIP . . . B 2 49.461 34.259 43.592 1 0 ? H1 RIP 272 A 1 HETATM 12 H H2 RIP . . . B 2 50.164 32.438 45.951 1 0 ? H2 RIP 272 A 1 HETATM 13 H H3 RIP . . . B 2 48.694 33.865 47.275 1 0 ? H3 RIP 272 A 1 HETATM 14 H H4 RIP . . . B 2 51.051 34.491 47.158 1 0 ? H4 RIP 272 A 1 HETATM 15 H H51 RIP . . . B 2 51.902 36.084 45.482 1 0 ? H51 RIP 272 A 1 HETATM 16 H H52 RIP . . . B 2 50.284 36.167 44.721 1 0 ? H52 RIP 272 A 1 HETATM 17 H HO1 RIP . . . B 2 51.481 32.358 43.489 1 0 ? HO1 RIP 272 A 1 HETATM 18 H HO2 RIP . . . B 2 48.335 32.135 44.139 1 0 ? HO2 RIP 272 A 1 HETATM 19 H HO3 RIP . . . B 2 47.571 34.487 45.077 1 0 ? HO3 RIP 272 A 1 HETATM 20 H HO4 RIP . . . B 2 49.632 35.97 48.209 1 0 ? HO4 RIP 272 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #