data_2DRK
#
_model_server_result.job_id            2BAa1NrkdI3uFqxRgXELjg 
_model_server_result.datetime_utc      '2024-11-26 02:13:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2drk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":100}' 
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_entry.id    2DRK 
#
_exptl.entry_id    2DRK 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2DRK 
_cell.length_a            32.701 
_cell.length_b            37.362 
_cell.length_c            43.836 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DRK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,C,E 2 1 
B,D,F 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_645 -x+1,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 32.701 -18.681 21.918 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     2DRK 
_atom_sites.fract_transf_matrix[1][1]    0.03058 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026765 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 100 100 GOL GOL . 
D 4 SO4 B 1 11 1 SO4 SO4 . 
E 5 HOH A 1 101 2 HOH HOH . 
E 5 HOH A 2 102 3 HOH HOH . 
E 5 HOH A 3 103 5 HOH HOH . 
E 5 HOH A 4 104 6 HOH HOH . 
E 5 HOH A 5 105 7 HOH HOH . 
E 5 HOH A 6 106 9 HOH HOH . 
E 5 HOH A 7 107 10 HOH HOH . 
E 5 HOH A 8 108 11 HOH HOH . 
E 5 HOH A 9 109 12 HOH HOH . 
E 5 HOH A 10 110 13 HOH HOH . 
E 5 HOH A 11 111 14 HOH HOH . 
E 5 HOH A 12 112 15 HOH HOH . 
E 5 HOH A 13 113 16 HOH HOH . 
E 5 HOH A 14 114 17 HOH HOH . 
E 5 HOH A 15 115 18 HOH HOH . 
E 5 HOH A 16 116 19 HOH HOH . 
E 5 HOH A 17 117 20 HOH HOH . 
E 5 HOH A 18 118 22 HOH HOH . 
E 5 HOH A 19 119 23 HOH HOH . 
E 5 HOH A 20 120 24 HOH HOH . 
E 5 HOH A 21 121 25 HOH HOH . 
E 5 HOH A 22 122 27 HOH HOH . 
E 5 HOH A 23 123 28 HOH HOH . 
E 5 HOH A 24 124 29 HOH HOH . 
E 5 HOH A 25 125 30 HOH HOH . 
E 5 HOH A 26 126 31 HOH HOH . 
E 5 HOH A 27 127 32 HOH HOH . 
E 5 HOH A 28 128 33 HOH HOH . 
E 5 HOH A 29 129 34 HOH HOH . 
E 5 HOH A 30 130 35 HOH HOH . 
E 5 HOH A 31 131 36 HOH HOH . 
E 5 HOH A 32 132 37 HOH HOH . 
E 5 HOH A 33 133 38 HOH HOH . 
E 5 HOH A 34 134 39 HOH HOH . 
E 5 HOH A 35 135 42 HOH HOH . 
E 5 HOH A 36 136 43 HOH HOH . 
E 5 HOH A 37 137 44 HOH HOH . 
E 5 HOH A 38 138 45 HOH HOH . 
E 5 HOH A 39 139 46 HOH HOH . 
E 5 HOH A 40 140 47 HOH HOH . 
E 5 HOH A 41 141 49 HOH HOH . 
E 5 HOH A 42 142 51 HOH HOH . 
E 5 HOH A 43 143 52 HOH HOH . 
E 5 HOH A 44 144 53 HOH HOH . 
E 5 HOH A 45 145 54 HOH HOH . 
E 5 HOH A 46 146 55 HOH HOH . 
E 5 HOH A 47 147 56 HOH HOH . 
E 5 HOH A 48 148 57 HOH HOH . 
E 5 HOH A 49 149 58 HOH HOH . 
E 5 HOH A 50 150 59 HOH HOH . 
E 5 HOH A 51 151 60 HOH HOH . 
E 5 HOH A 52 152 61 HOH HOH . 
E 5 HOH A 53 153 62 HOH HOH . 
E 5 HOH A 54 154 64 HOH HOH . 
E 5 HOH A 55 155 66 HOH HOH . 
E 5 HOH A 56 156 67 HOH HOH . 
E 5 HOH A 57 157 68 HOH HOH . 
E 5 HOH A 58 158 69 HOH HOH . 
E 5 HOH A 59 159 70 HOH HOH . 
E 5 HOH A 60 160 71 HOH HOH . 
E 5 HOH A 61 161 73 HOH HOH . 
E 5 HOH A 62 162 75 HOH HOH . 
E 5 HOH A 63 163 78 HOH HOH . 
E 5 HOH A 64 164 80 HOH HOH . 
E 5 HOH A 65 165 87 HOH HOH . 
E 5 HOH A 66 166 93 HOH HOH . 
E 5 HOH A 67 167 103 HOH HOH . 
F 5 HOH B 1 21 21 HOH HOH . 
F 5 HOH B 2 40 40 HOH HOH . 
F 5 HOH B 3 41 41 HOH HOH . 
F 5 HOH B 4 48 48 HOH HOH . 
F 5 HOH B 5 50 50 HOH HOH . 
F 5 HOH B 6 65 65 HOH HOH . 
F 5 HOH B 7 81 81 HOH HOH . 
F 5 HOH B 8 88 88 HOH HOH . 
F 5 HOH B 9 91 91 HOH HOH . 
F 5 HOH B 10 99 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 19.132 -0.873 10.44 1 9.27 ? C1 GOL 100 A 1 
HETATM 2 O O1 GOL . . . C 3 19.998 -0.445 9.399 1 8.36 ? O1 GOL 100 A 1 
HETATM 3 C C2 GOL . . . C 3 19.581 -2.224 10.974 1 9.69 ? C2 GOL 100 A 1 
HETATM 4 O O2 GOL . . . C 3 20.921 -2.139 11.437 1 9.4 ? O2 GOL 100 A 1 
HETATM 5 C C3 GOL . A . C 3 18.657 -2.687 12.093 0.5 10.95 ? C3 GOL 100 A 1 
HETATM 6 C C3 GOL . B . C 3 18.645 -2.604 12.113 0.5 10.12 ? C3 GOL 100 A 1 
HETATM 7 O O3 GOL . A . C 3 19.021 -2.09 13.327 0.5 12.54 ? O3 GOL 100 A 1 
HETATM 8 O O3 GOL . B . C 3 18.993 -3.868 12.655 0.5 10.13 ? O3 GOL 100 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
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