data_2DRM # _model_server_result.job_id bdMvtytFiYtK8UJYWwMi8Q _model_server_result.datetime_utc '2024-11-22 09:06:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2drm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1100}' # _entry.id 2DRM # _exptl.entry_id 2DRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.28 _cell.angle_beta 90.11 _cell.angle_gamma 90.64 _cell.entry_id 2DRM _cell.length_a 29.969 _cell.length_b 37.861 _cell.length_c 44.506 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,I,J,K,P,Q,S,T,W 1 1 C,D,F,L,M,N,O,R,U,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 M N N ? 4 O N N ? 4 Q N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2DRM _atom_sites.fract_transf_matrix[1][1] 0.033368 _atom_sites.fract_transf_matrix[1][2] 0.000373 _atom_sites.fract_transf_matrix[1][3] 0.000066 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026414 _atom_sites.fract_transf_matrix[2][3] 0.00013 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 SO4 A 1 1002 1002 SO4 SO4 . H 3 SO4 A 1 1005 1005 SO4 SO4 . I 3 SO4 A 1 1007 1007 SO4 SO4 . J 3 SO4 B 1 1006 1006 SO4 SO4 . K 4 GOL B 1 1101 1101 GOL GOL . L 3 SO4 C 1 1004 1004 SO4 SO4 . M 4 GOL C 1 1102 1102 GOL GOL . N 3 SO4 D 1 1008 1008 SO4 SO4 . O 4 GOL D 1 1103 1103 GOL GOL . P 3 SO4 E 1 1001 1001 SO4 SO4 . Q 4 GOL E 1 1100 1100 GOL GOL . R 3 SO4 G 1 1003 1003 SO4 SO4 . S 5 HOH A 1 1008 1 HOH HOH . S 5 HOH A 2 1009 11 HOH HOH . S 5 HOH A 3 1010 15 HOH HOH . S 5 HOH A 4 1011 17 HOH HOH . S 5 HOH A 5 1012 26 HOH HOH . S 5 HOH A 6 1013 27 HOH HOH . S 5 HOH A 7 1014 31 HOH HOH . S 5 HOH A 8 1015 38 HOH HOH . S 5 HOH A 9 1016 51 HOH HOH . S 5 HOH A 10 1017 54 HOH HOH . S 5 HOH A 11 1018 55 HOH HOH . S 5 HOH A 12 1019 56 HOH HOH . S 5 HOH A 13 1020 59 HOH HOH . S 5 HOH A 14 1021 62 HOH HOH . S 5 HOH A 15 1022 63 HOH HOH . S 5 HOH A 16 1023 68 HOH HOH . S 5 HOH A 17 1024 70 HOH HOH . S 5 HOH A 18 1025 71 HOH HOH . S 5 HOH A 19 1026 73 HOH HOH . S 5 HOH A 20 1027 76 HOH HOH . S 5 HOH A 21 1028 90 HOH HOH . S 5 HOH A 22 1029 96 HOH HOH . S 5 HOH A 23 1030 97 HOH HOH . S 5 HOH A 24 1031 98 HOH HOH . S 5 HOH A 25 1032 112 HOH HOH . S 5 HOH A 26 1033 113 HOH HOH . S 5 HOH A 27 1034 114 HOH HOH . S 5 HOH A 28 1035 115 HOH HOH . S 5 HOH A 29 1036 121 HOH HOH . S 5 HOH A 30 1037 132 HOH HOH . S 5 HOH A 31 1038 135 HOH HOH . S 5 HOH A 32 1039 139 HOH HOH . S 5 HOH A 33 1040 151 HOH HOH . S 5 HOH A 34 1041 156 HOH HOH . S 5 HOH A 35 1042 158 HOH HOH . S 5 HOH A 36 1043 161 HOH HOH . S 5 HOH A 37 1044 172 HOH HOH . S 5 HOH A 38 1045 174 HOH HOH . S 5 HOH A 39 1046 178 HOH HOH . S 5 HOH A 40 1047 180 HOH HOH . S 5 HOH A 41 1048 181 HOH HOH . S 5 HOH A 42 1049 183 HOH HOH . S 5 HOH A 43 1050 207 HOH HOH . S 5 HOH A 44 1051 215 HOH HOH . S 5 HOH A 45 1052 227 HOH HOH . S 5 HOH A 46 1053 230 HOH HOH . S 5 HOH A 47 1054 234 HOH HOH . S 5 HOH A 48 1055 236 HOH HOH . S 5 HOH A 49 1056 244 HOH HOH . S 5 HOH A 50 1057 245 HOH HOH . S 5 HOH A 51 1058 248 HOH HOH . S 5 HOH A 52 1059 254 HOH HOH . S 5 HOH A 53 1060 256 HOH HOH . S 5 HOH A 54 1061 259 HOH HOH . S 5 HOH A 55 1062 261 HOH HOH . S 5 HOH A 56 1063 271 HOH HOH . S 5 HOH A 57 1064 272 HOH HOH . S 5 HOH A 58 1065 273 HOH HOH . S 5 HOH A 59 1066 278 HOH HOH . S 5 HOH A 60 1067 280 HOH HOH . S 5 HOH A 61 1068 290 HOH HOH . S 5 HOH A 62 1069 300 HOH HOH . S 5 HOH A 63 1070 308 HOH HOH . S 5 HOH A 64 1071 326 HOH HOH . T 5 HOH B 1 1102 2 HOH HOH . T 5 HOH B 2 1103 8 HOH HOH . T 5 HOH B 3 1104 14 HOH HOH . T 5 HOH B 4 1105 18 HOH HOH . T 5 HOH B 5 1106 24 HOH HOH . T 5 HOH B 6 1107 25 HOH HOH . T 5 HOH B 7 1108 30 HOH HOH . T 5 HOH B 8 1109 36 HOH HOH . T 5 HOH B 9 1110 40 HOH HOH . T 5 HOH B 10 1111 46 HOH HOH . T 5 HOH B 11 1112 52 HOH HOH . T 5 HOH B 12 1113 53 HOH HOH . T 5 HOH B 13 1114 61 HOH HOH . T 5 HOH B 14 1115 65 HOH HOH . T 5 HOH B 15 1116 75 HOH HOH . T 5 HOH B 16 1117 82 HOH HOH . T 5 HOH B 17 1118 85 HOH HOH . T 5 HOH B 18 1119 87 HOH HOH . T 5 HOH B 19 1120 88 HOH HOH . T 5 HOH B 20 1121 89 HOH HOH . T 5 HOH B 21 1122 95 HOH HOH . T 5 HOH B 22 1123 99 HOH HOH . T 5 HOH B 23 1124 100 HOH HOH . T 5 HOH B 24 1125 116 HOH HOH . T 5 HOH B 25 1126 120 HOH HOH . T 5 HOH B 26 1127 128 HOH HOH . T 5 HOH B 27 1128 130 HOH HOH . T 5 HOH B 28 1129 131 HOH HOH . T 5 HOH B 29 1130 148 HOH HOH . T 5 HOH B 30 1131 149 HOH HOH . T 5 HOH B 31 1132 153 HOH HOH . T 5 HOH B 32 1133 159 HOH HOH . T 5 HOH B 33 1134 163 HOH HOH . T 5 HOH B 34 1135 166 HOH HOH . T 5 HOH B 35 1136 170 HOH HOH . T 5 HOH B 36 1137 190 HOH HOH . T 5 HOH B 37 1138 193 HOH HOH . T 5 HOH B 38 1139 195 HOH HOH . T 5 HOH B 39 1140 197 HOH HOH . T 5 HOH B 40 1141 200 HOH HOH . T 5 HOH B 41 1142 211 HOH HOH . T 5 HOH B 42 1143 221 HOH HOH . T 5 HOH B 43 1144 229 HOH HOH . T 5 HOH B 44 1145 232 HOH HOH . T 5 HOH B 45 1146 237 HOH HOH . T 5 HOH B 46 1147 238 HOH HOH . T 5 HOH B 47 1148 240 HOH HOH . T 5 HOH B 48 1149 246 HOH HOH . T 5 HOH B 49 1150 252 HOH HOH . T 5 HOH B 50 1151 255 HOH HOH . T 5 HOH B 51 1152 266 HOH HOH . T 5 HOH B 52 1153 267 HOH HOH . T 5 HOH B 53 1154 274 HOH HOH . T 5 HOH B 54 1155 275 HOH HOH . T 5 HOH B 55 1156 279 HOH HOH . T 5 HOH B 56 1157 287 HOH HOH . T 5 HOH B 57 1158 289 HOH HOH . T 5 HOH B 58 1159 291 HOH HOH . T 5 HOH B 59 1160 293 HOH HOH . T 5 HOH B 60 1161 298 HOH HOH . T 5 HOH B 61 1162 307 HOH HOH . T 5 HOH B 62 1163 325 HOH HOH . T 5 HOH B 63 1164 327 HOH HOH . U 5 HOH C 1 1103 4 HOH HOH . U 5 HOH C 2 1104 7 HOH HOH . U 5 HOH C 3 1105 9 HOH HOH . U 5 HOH C 4 1106 10 HOH HOH . U 5 HOH C 5 1107 16 HOH HOH . U 5 HOH C 6 1108 19 HOH HOH . U 5 HOH C 7 1109 21 HOH HOH . U 5 HOH C 8 1110 29 HOH HOH . U 5 HOH C 9 1111 32 HOH HOH . U 5 HOH C 10 1112 34 HOH HOH . U 5 HOH C 11 1113 37 HOH HOH . U 5 HOH C 12 1114 39 HOH HOH . U 5 HOH C 13 1115 60 HOH HOH . U 5 HOH C 14 1116 64 HOH HOH . U 5 HOH C 15 1117 67 HOH HOH . U 5 HOH C 16 1118 69 HOH HOH . U 5 HOH C 17 1119 77 HOH HOH . U 5 HOH C 18 1120 79 HOH HOH . U 5 HOH C 19 1121 81 HOH HOH . U 5 HOH C 20 1122 86 HOH HOH . U 5 HOH C 21 1123 92 HOH HOH . U 5 HOH C 22 1124 94 HOH HOH . U 5 HOH C 23 1125 101 HOH HOH . U 5 HOH C 24 1126 103 HOH HOH . U 5 HOH C 25 1127 105 HOH HOH . U 5 HOH C 26 1128 106 HOH HOH . U 5 HOH C 27 1129 107 HOH HOH . U 5 HOH C 28 1130 108 HOH HOH . U 5 HOH C 29 1131 111 HOH HOH . U 5 HOH C 30 1132 117 HOH HOH . U 5 HOH C 31 1133 123 HOH HOH . U 5 HOH C 32 1134 124 HOH HOH . U 5 HOH C 33 1135 141 HOH HOH . U 5 HOH C 34 1136 143 HOH HOH . U 5 HOH C 35 1137 145 HOH HOH . U 5 HOH C 36 1138 152 HOH HOH . U 5 HOH C 37 1139 160 HOH HOH . U 5 HOH C 38 1140 165 HOH HOH . U 5 HOH C 39 1141 167 HOH HOH . U 5 HOH C 40 1142 168 HOH HOH . U 5 HOH C 41 1143 175 HOH HOH . U 5 HOH C 42 1144 186 HOH HOH . U 5 HOH C 43 1145 187 HOH HOH . U 5 HOH C 44 1146 196 HOH HOH . U 5 HOH C 45 1147 204 HOH HOH . U 5 HOH C 46 1148 210 HOH HOH . U 5 HOH C 47 1149 212 HOH HOH . U 5 HOH C 48 1150 219 HOH HOH . U 5 HOH C 49 1151 223 HOH HOH . U 5 HOH C 50 1152 258 HOH HOH . U 5 HOH C 51 1153 262 HOH HOH . U 5 HOH C 52 1154 264 HOH HOH . U 5 HOH C 53 1155 265 HOH HOH . U 5 HOH C 54 1156 288 HOH HOH . V 5 HOH D 1 1104 3 HOH HOH . V 5 HOH D 2 1105 5 HOH HOH . V 5 HOH D 3 1106 6 HOH HOH . V 5 HOH D 4 1107 12 HOH HOH . V 5 HOH D 5 1108 13 HOH HOH . V 5 HOH D 6 1109 20 HOH HOH . V 5 HOH D 7 1110 22 HOH HOH . V 5 HOH D 8 1111 23 HOH HOH . V 5 HOH D 9 1112 28 HOH HOH . V 5 HOH D 10 1113 33 HOH HOH . V 5 HOH D 11 1114 35 HOH HOH . V 5 HOH D 12 1115 41 HOH HOH . V 5 HOH D 13 1116 42 HOH HOH . V 5 HOH D 14 1117 47 HOH HOH . V 5 HOH D 15 1118 48 HOH HOH . V 5 HOH D 16 1119 50 HOH HOH . V 5 HOH D 17 1120 57 HOH HOH . V 5 HOH D 18 1121 66 HOH HOH . V 5 HOH D 19 1122 72 HOH HOH . V 5 HOH D 20 1123 74 HOH HOH . V 5 HOH D 21 1124 78 HOH HOH . V 5 HOH D 22 1125 80 HOH HOH . V 5 HOH D 23 1126 84 HOH HOH . V 5 HOH D 24 1127 91 HOH HOH . V 5 HOH D 25 1128 93 HOH HOH . V 5 HOH D 26 1129 109 HOH HOH . V 5 HOH D 27 1130 119 HOH HOH . V 5 HOH D 28 1131 136 HOH HOH . V 5 HOH D 29 1132 137 HOH HOH . V 5 HOH D 30 1133 138 HOH HOH . V 5 HOH D 31 1134 144 HOH HOH . V 5 HOH D 32 1135 147 HOH HOH . V 5 HOH D 33 1136 154 HOH HOH . V 5 HOH D 34 1137 157 HOH HOH . V 5 HOH D 35 1138 162 HOH HOH . V 5 HOH D 36 1139 173 HOH HOH . V 5 HOH D 37 1140 179 HOH HOH . V 5 HOH D 38 1141 182 HOH HOH . V 5 HOH D 39 1142 184 HOH HOH . V 5 HOH D 40 1143 188 HOH HOH . V 5 HOH D 41 1144 198 HOH HOH . V 5 HOH D 42 1145 199 HOH HOH . V 5 HOH D 43 1146 201 HOH HOH . V 5 HOH D 44 1147 203 HOH HOH . V 5 HOH D 45 1148 209 HOH HOH . V 5 HOH D 46 1149 216 HOH HOH . V 5 HOH D 47 1150 225 HOH HOH . V 5 HOH D 48 1151 226 HOH HOH . V 5 HOH D 49 1152 235 HOH HOH . V 5 HOH D 50 1153 243 HOH HOH . V 5 HOH D 51 1154 251 HOH HOH . V 5 HOH D 52 1155 257 HOH HOH . V 5 HOH D 53 1156 268 HOH HOH . V 5 HOH D 54 1157 270 HOH HOH . V 5 HOH D 55 1158 281 HOH HOH . V 5 HOH D 56 1159 286 HOH HOH . V 5 HOH D 57 1160 301 HOH HOH . V 5 HOH D 58 1161 302 HOH HOH . V 5 HOH D 59 1162 329 HOH HOH . W 5 HOH E 1 45 45 HOH HOH . W 5 HOH E 2 49 49 HOH HOH . W 5 HOH E 3 102 102 HOH HOH . W 5 HOH E 4 118 118 HOH HOH . W 5 HOH E 5 134 134 HOH HOH . W 5 HOH E 6 140 140 HOH HOH . W 5 HOH E 7 150 150 HOH HOH . W 5 HOH E 8 171 171 HOH HOH . W 5 HOH E 9 191 191 HOH HOH . W 5 HOH E 10 194 194 HOH HOH . W 5 HOH E 11 220 220 HOH HOH . W 5 HOH E 12 231 231 HOH HOH . W 5 HOH E 13 247 247 HOH HOH . W 5 HOH E 14 250 250 HOH HOH . W 5 HOH E 15 284 284 HOH HOH . W 5 HOH E 16 297 297 HOH HOH . W 5 HOH E 17 315 315 HOH HOH . X 5 HOH G 1 44 44 HOH HOH . X 5 HOH G 2 110 110 HOH HOH . X 5 HOH G 3 127 127 HOH HOH . X 5 HOH G 4 146 146 HOH HOH . X 5 HOH G 5 155 155 HOH HOH . X 5 HOH G 6 164 164 HOH HOH . X 5 HOH G 7 177 177 HOH HOH . X 5 HOH G 8 185 185 HOH HOH . X 5 HOH G 9 208 208 HOH HOH . X 5 HOH G 10 249 249 HOH HOH . X 5 HOH G 11 263 263 HOH HOH . X 5 HOH G 12 299 299 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 4 19.74 -0.962 11.09 1 19.26 ? C1 GOL 1100 E 1 HETATM 2 O O1 GOL . . . Q 4 20.717 -0.327 10.287 1 17.77 ? O1 GOL 1100 E 1 HETATM 3 C C2 GOL . . . Q 4 20.368 -2.189 11.74 1 20.65 ? C2 GOL 1100 E 1 HETATM 4 O O2 GOL . . . Q 4 21.699 -1.865 12.113 1 22.34 ? O2 GOL 1100 E 1 HETATM 5 C C3 GOL . . . Q 4 19.527 -2.599 12.946 1 21.81 ? C3 GOL 1100 E 1 HETATM 6 O O3 GOL . . . Q 4 20.153 -3.639 13.684 1 24.14 ? O3 GOL 1100 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #