data_2DS5 # _model_server_result.job_id Zl4QDtCEGXsEN-xM5jbYmQ _model_server_result.datetime_utc '2024-10-19 19:55:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ds5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 2DS5 # _exptl.entry_id 2DS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DS5 _cell.length_a 32.523 _cell.length_b 43.399 _cell.length_c 67.719 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 14 A CYS 14 1_555 C ZN ZN . A ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc2 A SG CYS 17 A CYS 17 1_555 C ZN ZN . A ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A SG CYS 36 A CYS 36 1_555 C ZN ZN . A ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc4 A SG CYS 39 A CYS 39 1_555 C ZN ZN . A ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A OD1 ASP 41 A ASP 41 1_455 D CA CA . B CA 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc6 A OD2 ASP 41 A ASP 41 1_455 D CA CA . B CA 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.378 ? metalc ? metalc7 A O ASP 41 A ASP 41 1_455 D CA CA . B CA 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc8 A OD2 ASP 45 A ASP 45 1_455 D CA CA . B CA 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc9 A OD1 ASP 45 A ASP 45 1_455 D CA CA . B CA 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc10 G O HOH . A HOH 122 1_455 D CA CA . B CA 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc11 G O HOH . A HOH 123 1_455 D CA CA . B CA 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc12 B O GLY 9 B GLY 9 1_555 D CA CA . B CA 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc13 B SG CYS 14 B CYS 14 1_555 E ZN ZN . B ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc14 B SG CYS 17 B CYS 17 1_555 E ZN ZN . B ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc15 B SG CYS 36 B CYS 36 1_555 E ZN ZN . B ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc16 B SG CYS 39 B CYS 39 1_555 E ZN ZN . B ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 218 n n O1 HO1 PG4 sing 219 n n C1 C2 PG4 sing 220 n n C1 H11 PG4 sing 221 n n C1 H12 PG4 sing 222 n n C2 O2 PG4 sing 223 n n C2 H21 PG4 sing 224 n n C2 H22 PG4 sing 225 n n O2 C3 PG4 sing 226 n n C3 C4 PG4 sing 227 n n C3 H31 PG4 sing 228 n n C3 H32 PG4 sing 229 n n C4 O3 PG4 sing 230 n n C4 H41 PG4 sing 231 n n C4 H42 PG4 sing 232 n n O3 C5 PG4 sing 233 n n C5 C6 PG4 sing 234 n n C5 H51 PG4 sing 235 n n C5 H52 PG4 sing 236 n n C6 O4 PG4 sing 237 n n C6 H61 PG4 sing 238 n n C6 H62 PG4 sing 239 n n O4 C7 PG4 sing 240 n n C7 C8 PG4 sing 241 n n C7 H71 PG4 sing 242 n n C7 H72 PG4 sing 243 n n C8 O5 PG4 sing 244 n n C8 H81 PG4 sing 245 n n C8 H82 PG4 sing 246 n n O5 HO5 PG4 sing 247 n n # _atom_sites.entry_id 2DS5 _atom_sites.fract_transf_matrix[1][1] 0.030747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 100 100 ZN ZN . D 3 CA B 1 299 299 CA CA . E 2 ZN B 1 100 100 ZN ZN . F 4 PG4 B 1 501 501 PG4 PG4 . G 5 HOH A 1 101 2 HOH HOH . G 5 HOH A 2 102 3 HOH HOH . G 5 HOH A 3 103 5 HOH HOH . G 5 HOH A 4 104 6 HOH HOH . G 5 HOH A 5 105 7 HOH HOH . G 5 HOH A 6 106 8 HOH HOH . G 5 HOH A 7 107 10 HOH HOH . G 5 HOH A 8 108 11 HOH HOH . G 5 HOH A 9 109 12 HOH HOH . G 5 HOH A 10 110 13 HOH HOH . G 5 HOH A 11 111 16 HOH HOH . G 5 HOH A 12 112 17 HOH HOH . G 5 HOH A 13 113 18 HOH HOH . G 5 HOH A 14 114 19 HOH HOH . G 5 HOH A 15 115 22 HOH HOH . G 5 HOH A 16 116 24 HOH HOH . G 5 HOH A 17 117 26 HOH HOH . G 5 HOH A 18 118 27 HOH HOH . G 5 HOH A 19 119 29 HOH HOH . G 5 HOH A 20 120 33 HOH HOH . G 5 HOH A 21 121 35 HOH HOH . G 5 HOH A 22 122 37 HOH HOH . G 5 HOH A 23 123 39 HOH HOH . G 5 HOH A 24 124 43 HOH HOH . G 5 HOH A 25 125 44 HOH HOH . G 5 HOH A 26 126 46 HOH HOH . G 5 HOH A 27 127 47 HOH HOH . G 5 HOH A 28 128 49 HOH HOH . G 5 HOH A 29 129 51 HOH HOH . G 5 HOH A 30 130 52 HOH HOH . G 5 HOH A 31 131 53 HOH HOH . G 5 HOH A 32 132 56 HOH HOH . G 5 HOH A 33 133 58 HOH HOH . G 5 HOH A 34 134 60 HOH HOH . G 5 HOH A 35 135 61 HOH HOH . G 5 HOH A 36 136 63 HOH HOH . G 5 HOH A 37 137 66 HOH HOH . G 5 HOH A 38 138 70 HOH HOH . G 5 HOH A 39 139 71 HOH HOH . G 5 HOH A 40 140 74 HOH HOH . G 5 HOH A 41 141 76 HOH HOH . G 5 HOH A 42 142 78 HOH HOH . G 5 HOH A 43 143 80 HOH HOH . G 5 HOH A 44 144 82 HOH HOH . G 5 HOH A 45 145 83 HOH HOH . G 5 HOH A 46 146 86 HOH HOH . G 5 HOH A 47 147 87 HOH HOH . G 5 HOH A 48 148 88 HOH HOH . G 5 HOH A 49 149 89 HOH HOH . G 5 HOH A 50 150 95 HOH HOH . G 5 HOH A 51 151 98 HOH HOH . G 5 HOH A 52 152 103 HOH HOH . G 5 HOH A 53 153 104 HOH HOH . G 5 HOH A 54 154 110 HOH HOH . G 5 HOH A 55 155 113 HOH HOH . G 5 HOH A 56 156 114 HOH HOH . G 5 HOH A 57 157 115 HOH HOH . G 5 HOH A 58 158 122 HOH HOH . G 5 HOH A 59 159 124 HOH HOH . H 5 HOH B 1 502 1 HOH HOH . H 5 HOH B 2 503 4 HOH HOH . H 5 HOH B 3 504 9 HOH HOH . H 5 HOH B 4 505 14 HOH HOH . H 5 HOH B 5 506 15 HOH HOH . H 5 HOH B 6 507 20 HOH HOH . H 5 HOH B 7 508 21 HOH HOH . H 5 HOH B 8 509 23 HOH HOH . H 5 HOH B 9 510 25 HOH HOH . H 5 HOH B 10 511 28 HOH HOH . H 5 HOH B 11 512 30 HOH HOH . H 5 HOH B 12 513 31 HOH HOH . H 5 HOH B 13 514 32 HOH HOH . H 5 HOH B 14 515 34 HOH HOH . H 5 HOH B 15 516 36 HOH HOH . H 5 HOH B 16 517 38 HOH HOH . H 5 HOH B 17 518 40 HOH HOH . H 5 HOH B 18 519 41 HOH HOH . H 5 HOH B 19 520 42 HOH HOH . H 5 HOH B 20 521 45 HOH HOH . H 5 HOH B 21 522 48 HOH HOH . H 5 HOH B 22 523 50 HOH HOH . H 5 HOH B 23 524 54 HOH HOH . H 5 HOH B 24 525 55 HOH HOH . H 5 HOH B 25 526 57 HOH HOH . H 5 HOH B 26 527 59 HOH HOH . H 5 HOH B 27 528 62 HOH HOH . H 5 HOH B 28 529 64 HOH HOH . H 5 HOH B 29 530 65 HOH HOH . H 5 HOH B 30 531 67 HOH HOH . H 5 HOH B 31 532 68 HOH HOH . H 5 HOH B 32 533 69 HOH HOH . H 5 HOH B 33 534 72 HOH HOH . H 5 HOH B 34 535 73 HOH HOH . H 5 HOH B 35 536 75 HOH HOH . H 5 HOH B 36 537 77 HOH HOH . H 5 HOH B 37 538 79 HOH HOH . H 5 HOH B 38 539 81 HOH HOH . H 5 HOH B 39 540 84 HOH HOH . H 5 HOH B 40 541 85 HOH HOH . H 5 HOH B 41 542 90 HOH HOH . H 5 HOH B 42 543 91 HOH HOH . H 5 HOH B 43 544 92 HOH HOH . H 5 HOH B 44 545 93 HOH HOH . H 5 HOH B 45 546 94 HOH HOH . H 5 HOH B 46 547 96 HOH HOH . H 5 HOH B 47 548 97 HOH HOH . H 5 HOH B 48 549 99 HOH HOH . H 5 HOH B 49 550 100 HOH HOH . H 5 HOH B 50 551 101 HOH HOH . H 5 HOH B 51 552 102 HOH HOH . H 5 HOH B 52 553 105 HOH HOH . H 5 HOH B 53 554 106 HOH HOH . H 5 HOH B 54 555 107 HOH HOH . H 5 HOH B 55 556 108 HOH HOH . H 5 HOH B 56 557 109 HOH HOH . H 5 HOH B 57 558 111 HOH HOH . H 5 HOH B 58 559 112 HOH HOH . H 5 HOH B 59 560 116 HOH HOH . H 5 HOH B 60 561 117 HOH HOH . H 5 HOH B 61 562 118 HOH HOH . H 5 HOH B 62 563 119 HOH HOH . H 5 HOH B 63 564 120 HOH HOH . H 5 HOH B 64 565 121 HOH HOH . H 5 HOH B 65 566 123 HOH HOH . H 5 HOH B 66 567 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . F 4 -15.461 -18.343 12.401 1 48.69 ? O1 PG4 501 B 1 HETATM 2 C C1 PG4 . . . F 4 -15.103 -17.515 11.328 1 47.41 ? C1 PG4 501 B 1 HETATM 3 C C2 PG4 . . . F 4 -14.749 -16.115 11.929 1 46.55 ? C2 PG4 501 B 1 HETATM 4 O O2 PG4 . . . F 4 -14.345 -15.048 10.949 1 46.13 ? O2 PG4 501 B 1 HETATM 5 C C3 PG4 . . . F 4 -15.507 -14.285 10.364 1 46.38 ? C3 PG4 501 B 1 HETATM 6 C C4 PG4 . . . F 4 -15.61 -12.904 10.933 1 46.79 ? C4 PG4 501 B 1 HETATM 7 O O3 PG4 . . . F 4 -16.622 -12.077 10.236 1 47.79 ? O3 PG4 501 B 1 HETATM 8 C C5 PG4 . . . F 4 -18.099 -11.846 10.742 1 48.74 ? C5 PG4 501 B 1 HETATM 9 C C6 PG4 . . . F 4 -18.653 -12.5 12.075 1 50.05 ? C6 PG4 501 B 1 HETATM 10 O O4 PG4 . . . F 4 -20.065 -12.31 12.167 1 51.02 ? O4 PG4 501 B 1 HETATM 11 C C7 PG4 . . . F 4 -20.753 -13.613 12.278 1 51.92 ? C7 PG4 501 B 1 HETATM 12 C C8 PG4 . . . F 4 -21.504 -13.753 13.648 1 52.01 ? C8 PG4 501 B 1 HETATM 13 O O5 PG4 . . . F 4 -20.631 -14.44 14.578 1 52.47 ? O5 PG4 501 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #