data_2DSD
#
_model_server_result.job_id            JMbIG2R3MV5diOGwJxCEJg 
_model_server_result.datetime_utc      '2024-11-15 12:55:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dsd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    2DSD 
#
_exptl.entry_id    2DSD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          121.68 
_cell.angle_gamma         90 
_cell.entry_id            2DSD 
_cell.length_a            112.076 
_cell.length_b            40.156 
_cell.length_c            100.124 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DSD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 114 A GLU 112 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? 
metalc ? metalc2 A OE2 GLU 114 A GLU 112 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc3 A OE1 GLU 118 A GLU 116 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc4 A OE2 GLU 118 A GLU 116 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? 
metalc ? metalc5 A OE2 GLU 118 A GLU 116 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
metalc ? metalc6 A OE1 GLU 168 A GLU 166 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? 
metalc ? metalc7 A OE2 GLU 168 A GLU 166 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? 
metalc ? metalc8 C MG MG . A MG 301 1_555 F O2P AMP . A AMP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc9 C MG MG . A MG 301 1_555 K O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? 
metalc ? metalc10 D MG MG . A MG 302 1_555 F O1P AMP . A AMP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc11 E MG MG . A MG 303 1_555 F O1P AMP . A AMP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc12 E MG MG . A MG 303 1_555 K O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? 
metalc ? metalc13 B O ALA 98 B ALA 96 1_555 G MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc14 B OE1 GLU 114 B GLU 112 1_555 H MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc15 B OE2 GLU 114 B GLU 112 1_555 I MG MG . B MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc16 B OE1 GLU 118 B GLU 116 1_555 G MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc17 B OE1 GLU 118 B GLU 116 1_555 H MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc18 B OE1 GLU 168 B GLU 166 1_555 H MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc19 B OE2 GLU 168 B GLU 166 1_555 H MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? 
metalc ? metalc20 G MG MG . B MG 304 1_555 J O3P AMP . B AMP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc21 G MG MG . B MG 304 1_555 L O HOH . B HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? 
metalc ? metalc22 G MG MG . B MG 304 1_555 L O HOH . B HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc23 H MG MG . B MG 305 1_555 J O3P AMP . B AMP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc24 I MG MG . B MG 306 1_555 J O2P AMP . B AMP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2DSD 
_atom_sites.fract_transf_matrix[1][1]    0.008923 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005505 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011736 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 301 301 MG MG . 
D 2 MG A 1 302 302 MG MG . 
E 2 MG A 1 303 303 MG MG . 
F 3 AMP A 1 401 401 AMP AMP . 
G 2 MG B 1 304 304 MG MG . 
H 2 MG B 1 305 305 MG MG . 
I 2 MG B 1 306 306 MG MG . 
J 3 AMP B 1 402 402 AMP AMP . 
K 4 HOH A 1 402 1 HOH HOH . 
K 4 HOH A 2 403 2 HOH HOH . 
K 4 HOH A 3 404 4 HOH HOH . 
K 4 HOH A 4 405 6 HOH HOH . 
K 4 HOH A 5 406 12 HOH HOH . 
K 4 HOH A 6 407 13 HOH HOH . 
K 4 HOH A 7 408 17 HOH HOH . 
K 4 HOH A 8 409 18 HOH HOH . 
K 4 HOH A 9 410 25 HOH HOH . 
K 4 HOH A 10 411 26 HOH HOH . 
K 4 HOH A 11 412 30 HOH HOH . 
K 4 HOH A 12 413 33 HOH HOH . 
K 4 HOH A 13 414 34 HOH HOH . 
K 4 HOH A 14 415 35 HOH HOH . 
K 4 HOH A 15 416 36 HOH HOH . 
K 4 HOH A 16 417 37 HOH HOH . 
K 4 HOH A 17 418 44 HOH HOH . 
K 4 HOH A 18 419 48 HOH HOH . 
K 4 HOH A 19 420 49 HOH HOH . 
K 4 HOH A 20 421 50 HOH HOH . 
K 4 HOH A 21 422 51 HOH HOH . 
K 4 HOH A 22 423 55 HOH HOH . 
K 4 HOH A 23 424 56 HOH HOH . 
K 4 HOH A 24 425 57 HOH HOH . 
K 4 HOH A 25 426 58 HOH HOH . 
K 4 HOH A 26 427 62 HOH HOH . 
K 4 HOH A 27 428 63 HOH HOH . 
K 4 HOH A 28 429 64 HOH HOH . 
K 4 HOH A 29 430 66 HOH HOH . 
K 4 HOH A 30 431 67 HOH HOH . 
K 4 HOH A 31 432 69 HOH HOH . 
K 4 HOH A 32 433 70 HOH HOH . 
K 4 HOH A 33 434 71 HOH HOH . 
K 4 HOH A 34 435 76 HOH HOH . 
K 4 HOH A 35 436 77 HOH HOH . 
K 4 HOH A 36 437 79 HOH HOH . 
K 4 HOH A 37 438 82 HOH HOH . 
K 4 HOH A 38 439 83 HOH HOH . 
K 4 HOH A 39 440 84 HOH HOH . 
K 4 HOH A 40 441 86 HOH HOH . 
K 4 HOH A 41 442 92 HOH HOH . 
K 4 HOH A 42 443 93 HOH HOH . 
K 4 HOH A 43 444 94 HOH HOH . 
K 4 HOH A 44 445 96 HOH HOH . 
L 4 HOH B 1 403 3 HOH HOH . 
L 4 HOH B 2 404 5 HOH HOH . 
L 4 HOH B 3 405 7 HOH HOH . 
L 4 HOH B 4 406 8 HOH HOH . 
L 4 HOH B 5 407 9 HOH HOH . 
L 4 HOH B 6 408 10 HOH HOH . 
L 4 HOH B 7 409 11 HOH HOH . 
L 4 HOH B 8 410 14 HOH HOH . 
L 4 HOH B 9 411 15 HOH HOH . 
L 4 HOH B 10 412 16 HOH HOH . 
L 4 HOH B 11 413 19 HOH HOH . 
L 4 HOH B 12 414 20 HOH HOH . 
L 4 HOH B 13 415 21 HOH HOH . 
L 4 HOH B 14 416 22 HOH HOH . 
L 4 HOH B 15 417 23 HOH HOH . 
L 4 HOH B 16 418 24 HOH HOH . 
L 4 HOH B 17 419 27 HOH HOH . 
L 4 HOH B 18 420 28 HOH HOH . 
L 4 HOH B 19 421 29 HOH HOH . 
L 4 HOH B 20 422 31 HOH HOH . 
L 4 HOH B 21 423 32 HOH HOH . 
L 4 HOH B 22 424 38 HOH HOH . 
L 4 HOH B 23 425 39 HOH HOH . 
L 4 HOH B 24 426 40 HOH HOH . 
L 4 HOH B 25 427 41 HOH HOH . 
L 4 HOH B 26 428 42 HOH HOH . 
L 4 HOH B 27 429 43 HOH HOH . 
L 4 HOH B 28 430 45 HOH HOH . 
L 4 HOH B 29 431 46 HOH HOH . 
L 4 HOH B 30 432 47 HOH HOH . 
L 4 HOH B 31 433 52 HOH HOH . 
L 4 HOH B 32 434 53 HOH HOH . 
L 4 HOH B 33 435 54 HOH HOH . 
L 4 HOH B 34 436 59 HOH HOH . 
L 4 HOH B 35 437 60 HOH HOH . 
L 4 HOH B 36 438 61 HOH HOH . 
L 4 HOH B 37 439 65 HOH HOH . 
L 4 HOH B 38 440 68 HOH HOH . 
L 4 HOH B 39 441 72 HOH HOH . 
L 4 HOH B 40 442 73 HOH HOH . 
L 4 HOH B 41 443 74 HOH HOH . 
L 4 HOH B 42 444 75 HOH HOH . 
L 4 HOH B 43 445 78 HOH HOH . 
L 4 HOH B 44 446 80 HOH HOH . 
L 4 HOH B 45 447 81 HOH HOH . 
L 4 HOH B 46 448 85 HOH HOH . 
L 4 HOH B 47 449 87 HOH HOH . 
L 4 HOH B 48 450 88 HOH HOH . 
L 4 HOH B 49 451 89 HOH HOH . 
L 4 HOH B 50 452 90 HOH HOH . 
L 4 HOH B 51 453 91 HOH HOH . 
L 4 HOH B 52 454 95 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               3.921 
_atom_site.Cartn_y               12.37 
_atom_site.Cartn_z               61.407 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        89.62 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#