data_2DSY # _model_server_result.job_id XIcs7R0QBHB0Im-QQcV_mw _model_server_result.datetime_utc '2024-11-28 00:19:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1001}' # _entry.id 2DSY # _exptl.entry_id 2DSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.29 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.31 _cell.angle_gamma 90 _cell.entry_id 2DSY _cell.length_a 38.996 _cell.length_b 62.743 _cell.length_c 65.724 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 3 A GLY 3 1_555 A N MSE 4 A MSE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 4 A MSE 4 1_555 A N GLY 5 A GLY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C ALA 14 A ALA 14 1_555 A N MSE 15 A MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 15 A MSE 15 1_555 A N ALA 16 A ALA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 B C MSE 4 B MSE 4 1_555 B N GLY 5 B GLY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 B C ALA 14 B ALA 14 1_555 B N MSE 15 B MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C MSE 15 B MSE 15 1_555 B N ALA 16 B ALA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale8 C C MSE 4 C MSE 4 1_555 C N GLY 5 C GLY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 C C ALA 14 C ALA 14 1_555 C N MSE 15 C MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale10 C C MSE 15 C MSE 15 1_555 C N ALA 16 C ALA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 D C GLY 3 D GLY 3 1_555 D N MSE 4 D MSE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 D C MSE 4 D MSE 4 1_555 D N GLY 5 D GLY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 D C ALA 14 D ALA 14 1_555 D N MSE 15 D MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 D C MSE 15 D MSE 15 1_555 D N ALA 16 D ALA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 B OD1 ASP 25 B ASP 25 1_555 E MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc2 B OE1 GLU 26 B GLU 26 1_555 E MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc3 E MG MG . B MG 2001 1_555 I O HOH . B HOH 2029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 E MG MG . B MG 2001 1_555 I O HOH . B HOH 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc5 E MG MG . B MG 2001 1_555 I O HOH . B HOH 2038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? # _chem_comp.formula 'C8 H17 N O3 S' _chem_comp.formula_weight 207.29 _chem_comp.id NHE _chem_comp.mon_nstd_flag . _chem_comp.name '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-CYCLOHEXYLTAURINE;CHES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3' C2' NHE sing 256 n n C3' C4' NHE sing 257 n n C3' "H3'1" NHE sing 258 n n C3' "H3'2" NHE sing 259 n n C2' C1' NHE sing 260 n n C2' "H2'1" NHE sing 261 n n C2' "H2'2" NHE sing 262 n n C1' C6' NHE sing 263 n n C1' N NHE sing 264 n n C1' "HC'1" NHE sing 265 n n C6' C5' NHE sing 266 n n C6' "H6'1" NHE sing 267 n n C6' "H6'2" NHE sing 268 n n N C1 NHE sing 269 n n N HN NHE sing 270 n n C1 C2 NHE sing 271 n n C1 HC11 NHE sing 272 n n C1 HC12 NHE sing 273 n n C2 S NHE sing 274 n n C2 HC21 NHE sing 275 n n C2 HC22 NHE sing 276 n n S O1 NHE doub 277 n n S O2 NHE doub 278 n n S O3 NHE sing 279 n n O3 HO3 NHE sing 280 n n C5' C4' NHE sing 281 n n C5' "H5'1" NHE sing 282 n n C5' "H5'2" NHE sing 283 n n C4' "H4'1" NHE sing 284 n n C4' "H4'2" NHE sing 285 n n # _atom_sites.entry_id 2DSY _atom_sites.fract_transf_matrix[1][1] 0.025644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006541 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG B 1 2001 2001 MG MG . F 3 NHE C 1 1001 1001 NHE NHE . G 3 NHE C 1 1002 1002 NHE NHE . H 4 HOH A 1 88 1 HOH HOH . H 4 HOH A 2 89 3 HOH HOH . H 4 HOH A 3 90 4 HOH HOH . H 4 HOH A 4 91 16 HOH HOH . H 4 HOH A 5 92 19 HOH HOH . H 4 HOH A 6 93 27 HOH HOH . H 4 HOH A 7 94 34 HOH HOH . H 4 HOH A 8 95 37 HOH HOH . H 4 HOH A 9 96 41 HOH HOH . H 4 HOH A 10 97 42 HOH HOH . H 4 HOH A 11 98 43 HOH HOH . H 4 HOH A 12 99 44 HOH HOH . H 4 HOH A 13 100 74 HOH HOH . H 4 HOH A 14 101 80 HOH HOH . H 4 HOH A 15 102 82 HOH HOH . H 4 HOH A 16 103 88 HOH HOH . H 4 HOH A 17 104 91 HOH HOH . H 4 HOH A 18 105 92 HOH HOH . H 4 HOH A 19 106 93 HOH HOH . H 4 HOH A 20 107 94 HOH HOH . H 4 HOH A 21 108 114 HOH HOH . H 4 HOH A 22 109 117 HOH HOH . H 4 HOH A 23 110 124 HOH HOH . H 4 HOH A 24 111 126 HOH HOH . H 4 HOH A 25 112 127 HOH HOH . H 4 HOH A 26 113 138 HOH HOH . H 4 HOH A 27 114 139 HOH HOH . H 4 HOH A 28 115 140 HOH HOH . H 4 HOH A 29 116 141 HOH HOH . H 4 HOH A 30 117 149 HOH HOH . H 4 HOH A 31 118 151 HOH HOH . H 4 HOH A 32 119 167 HOH HOH . I 4 HOH B 1 2002 5 HOH HOH . I 4 HOH B 2 2003 6 HOH HOH . I 4 HOH B 3 2004 7 HOH HOH . I 4 HOH B 4 2005 8 HOH HOH . I 4 HOH B 5 2006 17 HOH HOH . I 4 HOH B 6 2007 20 HOH HOH . I 4 HOH B 7 2008 23 HOH HOH . I 4 HOH B 8 2009 26 HOH HOH . I 4 HOH B 9 2010 30 HOH HOH . I 4 HOH B 10 2011 33 HOH HOH . I 4 HOH B 11 2012 45 HOH HOH . I 4 HOH B 12 2013 49 HOH HOH . I 4 HOH B 13 2014 51 HOH HOH . I 4 HOH B 14 2015 53 HOH HOH . I 4 HOH B 15 2016 54 HOH HOH . I 4 HOH B 16 2017 68 HOH HOH . I 4 HOH B 17 2018 69 HOH HOH . I 4 HOH B 18 2019 70 HOH HOH . I 4 HOH B 19 2020 71 HOH HOH . I 4 HOH B 20 2021 72 HOH HOH . I 4 HOH B 21 2022 73 HOH HOH . I 4 HOH B 22 2023 75 HOH HOH . I 4 HOH B 23 2024 79 HOH HOH . I 4 HOH B 24 2025 84 HOH HOH . I 4 HOH B 25 2026 89 HOH HOH . I 4 HOH B 26 2027 90 HOH HOH . I 4 HOH B 27 2028 95 HOH HOH . I 4 HOH B 28 2029 97 HOH HOH . I 4 HOH B 29 2030 98 HOH HOH . I 4 HOH B 30 2031 99 HOH HOH . I 4 HOH B 31 2032 100 HOH HOH . I 4 HOH B 32 2033 101 HOH HOH . I 4 HOH B 33 2034 102 HOH HOH . I 4 HOH B 34 2035 103 HOH HOH . I 4 HOH B 35 2036 118 HOH HOH . I 4 HOH B 36 2037 119 HOH HOH . I 4 HOH B 37 2038 120 HOH HOH . I 4 HOH B 38 2039 128 HOH HOH . I 4 HOH B 39 2040 129 HOH HOH . I 4 HOH B 40 2041 130 HOH HOH . I 4 HOH B 41 2042 137 HOH HOH . I 4 HOH B 42 2043 142 HOH HOH . I 4 HOH B 43 2044 152 HOH HOH . I 4 HOH B 44 2045 153 HOH HOH . I 4 HOH B 45 2046 154 HOH HOH . I 4 HOH B 46 2047 155 HOH HOH . I 4 HOH B 47 2048 156 HOH HOH . I 4 HOH B 48 2049 161 HOH HOH . I 4 HOH B 49 2050 164 HOH HOH . I 4 HOH B 50 2051 170 HOH HOH . I 4 HOH B 51 2052 172 HOH HOH . I 4 HOH B 52 2053 174 HOH HOH . J 4 HOH C 1 1003 2 HOH HOH . J 4 HOH C 2 1004 9 HOH HOH . J 4 HOH C 3 1005 10 HOH HOH . J 4 HOH C 4 1006 11 HOH HOH . J 4 HOH C 5 1007 14 HOH HOH . J 4 HOH C 6 1008 15 HOH HOH . J 4 HOH C 7 1009 18 HOH HOH . J 4 HOH C 8 1010 21 HOH HOH . J 4 HOH C 9 1011 24 HOH HOH . J 4 HOH C 10 1012 25 HOH HOH . J 4 HOH C 11 1013 28 HOH HOH . J 4 HOH C 12 1014 46 HOH HOH . J 4 HOH C 13 1015 47 HOH HOH . J 4 HOH C 14 1016 50 HOH HOH . J 4 HOH C 15 1017 52 HOH HOH . J 4 HOH C 16 1018 55 HOH HOH . J 4 HOH C 17 1019 57 HOH HOH . J 4 HOH C 18 1020 58 HOH HOH . J 4 HOH C 19 1021 59 HOH HOH . J 4 HOH C 20 1022 60 HOH HOH . J 4 HOH C 21 1023 61 HOH HOH . J 4 HOH C 22 1024 63 HOH HOH . J 4 HOH C 23 1025 64 HOH HOH . J 4 HOH C 24 1026 66 HOH HOH . J 4 HOH C 25 1027 76 HOH HOH . J 4 HOH C 26 1028 78 HOH HOH . J 4 HOH C 27 1029 81 HOH HOH . J 4 HOH C 28 1030 83 HOH HOH . J 4 HOH C 29 1031 87 HOH HOH . J 4 HOH C 30 1032 96 HOH HOH . J 4 HOH C 31 1033 105 HOH HOH . J 4 HOH C 32 1034 106 HOH HOH . J 4 HOH C 33 1035 107 HOH HOH . J 4 HOH C 34 1036 108 HOH HOH . J 4 HOH C 35 1037 109 HOH HOH . J 4 HOH C 36 1038 110 HOH HOH . J 4 HOH C 37 1039 115 HOH HOH . J 4 HOH C 38 1040 121 HOH HOH . J 4 HOH C 39 1041 122 HOH HOH . J 4 HOH C 40 1042 134 HOH HOH . J 4 HOH C 41 1043 136 HOH HOH . J 4 HOH C 42 1044 143 HOH HOH . J 4 HOH C 43 1045 144 HOH HOH . J 4 HOH C 44 1046 146 HOH HOH . J 4 HOH C 45 1047 147 HOH HOH . J 4 HOH C 46 1048 157 HOH HOH . J 4 HOH C 47 1049 158 HOH HOH . J 4 HOH C 48 1050 159 HOH HOH . J 4 HOH C 49 1051 160 HOH HOH . J 4 HOH C 50 1052 162 HOH HOH . K 4 HOH D 1 88 12 HOH HOH . K 4 HOH D 2 89 13 HOH HOH . K 4 HOH D 3 90 22 HOH HOH . K 4 HOH D 4 91 29 HOH HOH . K 4 HOH D 5 92 31 HOH HOH . K 4 HOH D 6 93 32 HOH HOH . K 4 HOH D 7 94 35 HOH HOH . K 4 HOH D 8 95 36 HOH HOH . K 4 HOH D 9 96 38 HOH HOH . K 4 HOH D 10 97 39 HOH HOH . K 4 HOH D 11 98 40 HOH HOH . K 4 HOH D 12 99 48 HOH HOH . K 4 HOH D 13 100 56 HOH HOH . K 4 HOH D 14 101 62 HOH HOH . K 4 HOH D 15 102 65 HOH HOH . K 4 HOH D 16 103 67 HOH HOH . K 4 HOH D 17 104 77 HOH HOH . K 4 HOH D 18 105 85 HOH HOH . K 4 HOH D 19 106 86 HOH HOH . K 4 HOH D 20 107 104 HOH HOH . K 4 HOH D 21 108 111 HOH HOH . K 4 HOH D 22 109 112 HOH HOH . K 4 HOH D 23 110 113 HOH HOH . K 4 HOH D 24 111 116 HOH HOH . K 4 HOH D 25 112 123 HOH HOH . K 4 HOH D 26 113 125 HOH HOH . K 4 HOH D 27 114 131 HOH HOH . K 4 HOH D 28 115 132 HOH HOH . K 4 HOH D 29 116 133 HOH HOH . K 4 HOH D 30 117 135 HOH HOH . K 4 HOH D 31 118 145 HOH HOH . K 4 HOH D 32 119 148 HOH HOH . K 4 HOH D 33 120 150 HOH HOH . K 4 HOH D 34 121 163 HOH HOH . K 4 HOH D 35 122 165 HOH HOH . K 4 HOH D 36 123 166 HOH HOH . K 4 HOH D 37 124 168 HOH HOH . K 4 HOH D 38 125 169 HOH HOH . K 4 HOH D 39 126 171 HOH HOH . K 4 HOH D 40 127 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3' NHE . . . F 3 18.374 34.932 67.03 1 16.07 ? C3' NHE 1001 C 1 HETATM 2 C C2' NHE . . . F 3 17.364 34.105 66.243 1 16.65 ? C2' NHE 1001 C 1 HETATM 3 C C1' NHE . . . F 3 16.807 32.961 67.098 1 18.62 ? C1' NHE 1001 C 1 HETATM 4 C C6' NHE . . . F 3 16.076 33.572 68.314 1 19.02 ? C6' NHE 1001 C 1 HETATM 5 N N NHE . . . F 3 15.917 32.147 66.205 1 18.9 ? N NHE 1001 C 1 HETATM 6 C C1 NHE . . . F 3 15.038 31.186 66.921 1 18.78 ? C1 NHE 1001 C 1 HETATM 7 C C2 NHE . . . F 3 14.051 30.627 65.867 1 19.04 ? C2 NHE 1001 C 1 HETATM 8 S S NHE . . . F 3 13.21 29.159 66.566 1 21.39 ? S NHE 1001 C 1 HETATM 9 O O1 NHE . . . F 3 12.63 29.514 67.896 1 21.27 ? O1 NHE 1001 C 1 HETATM 10 O O2 NHE . . . F 3 14.227 28.116 66.814 1 20.73 ? O2 NHE 1001 C 1 HETATM 11 O O3 NHE . . . F 3 12.138 28.8 65.615 1 23.81 ? O3 NHE 1001 C 1 HETATM 12 C C5' NHE . . . F 3 17.004 34.514 69.127 1 17.84 ? C5' NHE 1001 C 1 HETATM 13 C C4' NHE . . . F 3 17.645 35.581 68.205 1 17.32 ? C4' NHE 1001 C 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #