data_2DT4 # _model_server_result.job_id xAhMkDB-lzVWoYpBV6nunA _model_server_result.datetime_utc '2025-03-04 14:55:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1144}' # _entry.id 2DT4 # _exptl.entry_id 2DT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DT4 _cell.length_a 53.922 _cell.length_b 53.922 _cell.length_c 159.181 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PQS hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2,3 A,B,C 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 26.961 46.697822 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -26.961 46.697822 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 26.961 46.697822 79.5905 5 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 79.5905 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -26.961 46.697822 79.5905 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2DT4 _atom_sites.fract_transf_matrix[1][1] 0.018545 _atom_sites.fract_transf_matrix[1][2] 0.010707 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1144 1144 GOL CRY . C 3 HOH A 1 1145 1 HOH HOH . C 3 HOH A 2 1146 2 HOH HOH . C 3 HOH A 3 1147 3 HOH HOH . C 3 HOH A 4 1148 4 HOH HOH . C 3 HOH A 5 1149 5 HOH HOH . C 3 HOH A 6 1150 6 HOH HOH . C 3 HOH A 7 1151 7 HOH HOH . C 3 HOH A 8 1152 8 HOH HOH . C 3 HOH A 9 1153 9 HOH HOH . C 3 HOH A 10 1154 10 HOH HOH . C 3 HOH A 11 1155 11 HOH HOH . C 3 HOH A 12 1156 12 HOH HOH . C 3 HOH A 13 1157 13 HOH HOH . C 3 HOH A 14 1158 14 HOH HOH . C 3 HOH A 15 1159 15 HOH HOH . C 3 HOH A 16 1160 16 HOH HOH . C 3 HOH A 17 1161 17 HOH HOH . C 3 HOH A 18 1162 18 HOH HOH . C 3 HOH A 19 1163 19 HOH HOH . C 3 HOH A 20 1164 20 HOH HOH . C 3 HOH A 21 1165 21 HOH HOH . C 3 HOH A 22 1166 22 HOH HOH . C 3 HOH A 23 1167 23 HOH HOH . C 3 HOH A 24 1168 24 HOH HOH . C 3 HOH A 25 1169 25 HOH HOH . C 3 HOH A 26 1170 26 HOH HOH . C 3 HOH A 27 1171 27 HOH HOH . C 3 HOH A 28 1172 28 HOH HOH . C 3 HOH A 29 1173 29 HOH HOH . C 3 HOH A 30 1174 30 HOH HOH . C 3 HOH A 31 1175 31 HOH HOH . C 3 HOH A 32 1176 32 HOH HOH . C 3 HOH A 33 1177 33 HOH HOH . C 3 HOH A 34 1178 34 HOH HOH . C 3 HOH A 35 1179 35 HOH HOH . C 3 HOH A 36 1180 36 HOH HOH . C 3 HOH A 37 1181 37 HOH HOH . C 3 HOH A 38 1182 38 HOH HOH . C 3 HOH A 39 1183 39 HOH HOH . C 3 HOH A 40 1184 40 HOH HOH . C 3 HOH A 41 1185 41 HOH HOH . C 3 HOH A 42 1186 42 HOH HOH . C 3 HOH A 43 1187 43 HOH HOH . C 3 HOH A 44 1188 44 HOH HOH . C 3 HOH A 45 1189 45 HOH HOH . C 3 HOH A 46 1190 46 HOH HOH . C 3 HOH A 47 1191 47 HOH HOH . C 3 HOH A 48 1192 48 HOH HOH . C 3 HOH A 49 1193 49 HOH HOH . C 3 HOH A 50 1194 50 HOH HOH . C 3 HOH A 51 1195 51 HOH HOH . C 3 HOH A 52 1196 52 HOH HOH . C 3 HOH A 53 1197 53 HOH HOH . C 3 HOH A 54 1198 54 HOH HOH . C 3 HOH A 55 1199 55 HOH HOH . C 3 HOH A 56 1200 56 HOH HOH . C 3 HOH A 57 1201 57 HOH HOH . C 3 HOH A 58 1202 58 HOH HOH . C 3 HOH A 59 1203 59 HOH HOH . C 3 HOH A 60 1204 60 HOH HOH . C 3 HOH A 61 1205 61 HOH HOH . C 3 HOH A 62 1206 62 HOH HOH . C 3 HOH A 63 1207 63 HOH HOH . C 3 HOH A 64 1208 64 HOH HOH . C 3 HOH A 65 1209 65 HOH HOH . C 3 HOH A 66 1210 66 HOH HOH . C 3 HOH A 67 1211 67 HOH HOH . C 3 HOH A 68 1212 68 HOH HOH . C 3 HOH A 69 1213 69 HOH HOH . C 3 HOH A 70 1214 70 HOH HOH . C 3 HOH A 71 1215 71 HOH HOH . C 3 HOH A 72 1216 72 HOH HOH . C 3 HOH A 73 1217 73 HOH HOH . C 3 HOH A 74 1218 74 HOH HOH . C 3 HOH A 75 1219 75 HOH HOH . C 3 HOH A 76 1220 76 HOH HOH . C 3 HOH A 77 1221 77 HOH HOH . C 3 HOH A 78 1222 78 HOH HOH . C 3 HOH A 79 1223 79 HOH HOH . C 3 HOH A 80 1224 80 HOH HOH . C 3 HOH A 81 1225 81 HOH HOH . C 3 HOH A 82 1226 82 HOH HOH . C 3 HOH A 83 1227 83 HOH HOH . C 3 HOH A 84 1228 84 HOH HOH . C 3 HOH A 85 1229 85 HOH HOH . C 3 HOH A 86 1230 86 HOH HOH . C 3 HOH A 87 1231 87 HOH HOH . C 3 HOH A 88 1232 88 HOH HOH . C 3 HOH A 89 1233 89 HOH HOH . C 3 HOH A 90 1234 90 HOH HOH . C 3 HOH A 91 1235 91 HOH HOH . C 3 HOH A 92 1236 92 HOH HOH . C 3 HOH A 93 1237 93 HOH HOH . C 3 HOH A 94 1238 94 HOH HOH . C 3 HOH A 95 1239 95 HOH HOH . C 3 HOH A 96 1240 96 HOH HOH . C 3 HOH A 97 1241 97 HOH HOH . C 3 HOH A 98 1242 98 HOH HOH . C 3 HOH A 99 1243 99 HOH HOH . C 3 HOH A 100 1244 100 HOH HOH . C 3 HOH A 101 1245 101 HOH HOH . C 3 HOH A 102 1246 102 HOH HOH . C 3 HOH A 103 1247 103 HOH HOH . C 3 HOH A 104 1248 104 HOH HOH . C 3 HOH A 105 1249 105 HOH HOH . C 3 HOH A 106 1250 106 HOH HOH . C 3 HOH A 107 1251 107 HOH HOH . C 3 HOH A 108 1252 108 HOH HOH . C 3 HOH A 109 1253 109 HOH HOH . C 3 HOH A 110 1254 110 HOH HOH . C 3 HOH A 111 1255 111 HOH HOH . C 3 HOH A 112 1256 112 HOH HOH . C 3 HOH A 113 1257 113 HOH HOH . C 3 HOH A 114 1258 114 HOH HOH . C 3 HOH A 115 1259 115 HOH HOH . C 3 HOH A 116 1260 116 HOH HOH . C 3 HOH A 117 1261 117 HOH HOH . C 3 HOH A 118 1262 118 HOH HOH . C 3 HOH A 119 1263 119 HOH HOH . C 3 HOH A 120 1264 120 HOH HOH . C 3 HOH A 121 1265 121 HOH HOH . C 3 HOH A 122 1266 122 HOH HOH . C 3 HOH A 123 1267 123 HOH HOH . C 3 HOH A 124 1268 124 HOH HOH . C 3 HOH A 125 1269 125 HOH HOH . C 3 HOH A 126 1270 126 HOH HOH . C 3 HOH A 127 1271 127 HOH HOH . C 3 HOH A 128 1272 128 HOH HOH . C 3 HOH A 129 1273 129 HOH HOH . C 3 HOH A 130 1274 130 HOH HOH . C 3 HOH A 131 1275 131 HOH HOH . C 3 HOH A 132 1276 132 HOH HOH . C 3 HOH A 133 1277 133 HOH HOH . C 3 HOH A 134 1278 134 HOH HOH . C 3 HOH A 135 1279 135 HOH HOH . C 3 HOH A 136 1280 136 HOH HOH . C 3 HOH A 137 1281 137 HOH HOH . C 3 HOH A 138 1282 138 HOH HOH . C 3 HOH A 139 1283 139 HOH HOH . C 3 HOH A 140 1284 140 HOH HOH . C 3 HOH A 141 1285 141 HOH HOH . C 3 HOH A 142 1286 142 HOH HOH . C 3 HOH A 143 1287 143 HOH HOH . C 3 HOH A 144 1288 144 HOH HOH . C 3 HOH A 145 1289 145 HOH HOH . C 3 HOH A 146 1290 146 HOH HOH . C 3 HOH A 147 1291 147 HOH HOH . C 3 HOH A 148 1292 148 HOH HOH . C 3 HOH A 149 1293 149 HOH HOH . C 3 HOH A 150 1294 150 HOH HOH . C 3 HOH A 151 1295 151 HOH HOH . C 3 HOH A 152 1296 152 HOH HOH . C 3 HOH A 153 1297 153 HOH HOH . C 3 HOH A 154 1298 154 HOH HOH . C 3 HOH A 155 1299 155 HOH HOH . C 3 HOH A 156 1300 156 HOH HOH . C 3 HOH A 157 1301 157 HOH HOH . C 3 HOH A 158 1302 158 HOH HOH . C 3 HOH A 159 1303 159 HOH HOH . C 3 HOH A 160 1304 160 HOH HOH . C 3 HOH A 161 1305 161 HOH HOH . C 3 HOH A 162 1306 162 HOH HOH . C 3 HOH A 163 1307 163 HOH HOH . C 3 HOH A 164 1308 164 HOH HOH . C 3 HOH A 165 1309 165 HOH HOH . C 3 HOH A 166 1310 166 HOH HOH . C 3 HOH A 167 1311 167 HOH HOH . C 3 HOH A 168 1312 168 HOH HOH . C 3 HOH A 169 1313 169 HOH HOH . C 3 HOH A 170 1314 170 HOH HOH . C 3 HOH A 171 1315 171 HOH HOH . C 3 HOH A 172 1316 172 HOH HOH . C 3 HOH A 173 1317 173 HOH HOH . C 3 HOH A 174 1318 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 10.396 43.618 54.048 1 21.72 ? C1 GOL 1144 A 1 HETATM 2 O O1 GOL . . . B 2 10.601 42.959 52.832 1 24.84 ? O1 GOL 1144 A 1 HETATM 3 C C2 GOL . . . B 2 9.316 42.913 54.877 1 21 ? C2 GOL 1144 A 1 HETATM 4 O O2 GOL . . . B 2 7.988 43.241 54.456 1 19.47 ? O2 GOL 1144 A 1 HETATM 5 C C3 GOL . . . B 2 9.532 43.386 56.314 1 20.95 ? C3 GOL 1144 A 1 HETATM 6 O O3 GOL . . . B 2 8.929 42.519 57.248 1 20.69 ? O3 GOL 1144 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #