data_2DTJ # _model_server_result.job_id HiK953bV_Zl8Uy6LRn5ccA _model_server_result.datetime_utc '2024-11-24 15:42:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dtj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2DTJ # _exptl.entry_id 2DTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.25 _cell.angle_gamma 90 _cell.entry_id 2DTJ _cell.length_a 79.989 _cell.length_b 59.01 _cell.length_c 75.782 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 2DTJ _atom_sites.fract_transf_matrix[1][1] 0.012502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006164 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 THR A 1 401 401 THR THR . D 2 THR B 1 402 402 THR THR . E 3 CIT B 1 501 501 CIT CIT . F 4 HOH A 1 402 2 HOH HOH . F 4 HOH A 2 403 3 HOH HOH . F 4 HOH A 3 404 4 HOH HOH . F 4 HOH A 4 405 5 HOH HOH . F 4 HOH A 5 406 7 HOH HOH . F 4 HOH A 6 407 9 HOH HOH . F 4 HOH A 7 408 11 HOH HOH . F 4 HOH A 8 409 12 HOH HOH . F 4 HOH A 9 410 13 HOH HOH . F 4 HOH A 10 411 15 HOH HOH . F 4 HOH A 11 412 16 HOH HOH . F 4 HOH A 12 413 17 HOH HOH . F 4 HOH A 13 414 19 HOH HOH . F 4 HOH A 14 415 21 HOH HOH . F 4 HOH A 15 416 22 HOH HOH . F 4 HOH A 16 417 23 HOH HOH . F 4 HOH A 17 418 24 HOH HOH . F 4 HOH A 18 419 26 HOH HOH . F 4 HOH A 19 420 27 HOH HOH . F 4 HOH A 20 421 29 HOH HOH . F 4 HOH A 21 422 30 HOH HOH . F 4 HOH A 22 423 31 HOH HOH . F 4 HOH A 23 424 32 HOH HOH . F 4 HOH A 24 425 33 HOH HOH . F 4 HOH A 25 426 34 HOH HOH . F 4 HOH A 26 427 36 HOH HOH . F 4 HOH A 27 428 37 HOH HOH . F 4 HOH A 28 429 39 HOH HOH . F 4 HOH A 29 430 40 HOH HOH . F 4 HOH A 30 431 42 HOH HOH . F 4 HOH A 31 432 44 HOH HOH . F 4 HOH A 32 433 45 HOH HOH . F 4 HOH A 33 434 47 HOH HOH . F 4 HOH A 34 435 49 HOH HOH . F 4 HOH A 35 436 52 HOH HOH . F 4 HOH A 36 437 53 HOH HOH . F 4 HOH A 37 438 54 HOH HOH . F 4 HOH A 38 439 59 HOH HOH . F 4 HOH A 39 440 60 HOH HOH . F 4 HOH A 40 441 61 HOH HOH . F 4 HOH A 41 442 62 HOH HOH . F 4 HOH A 42 443 63 HOH HOH . F 4 HOH A 43 444 66 HOH HOH . F 4 HOH A 44 445 68 HOH HOH . F 4 HOH A 45 446 72 HOH HOH . F 4 HOH A 46 447 73 HOH HOH . F 4 HOH A 47 448 76 HOH HOH . F 4 HOH A 48 449 78 HOH HOH . F 4 HOH A 49 450 79 HOH HOH . F 4 HOH A 50 451 80 HOH HOH . F 4 HOH A 51 452 81 HOH HOH . F 4 HOH A 52 453 89 HOH HOH . F 4 HOH A 53 454 90 HOH HOH . F 4 HOH A 54 455 92 HOH HOH . F 4 HOH A 55 456 93 HOH HOH . F 4 HOH A 56 457 94 HOH HOH . F 4 HOH A 57 458 95 HOH HOH . F 4 HOH A 58 459 96 HOH HOH . F 4 HOH A 59 460 98 HOH HOH . F 4 HOH A 60 461 99 HOH HOH . F 4 HOH A 61 462 100 HOH HOH . F 4 HOH A 62 463 101 HOH HOH . F 4 HOH A 63 464 103 HOH HOH . F 4 HOH A 64 465 104 HOH HOH . F 4 HOH A 65 466 107 HOH HOH . F 4 HOH A 66 467 111 HOH HOH . F 4 HOH A 67 468 113 HOH HOH . F 4 HOH A 68 469 114 HOH HOH . F 4 HOH A 69 470 118 HOH HOH . F 4 HOH A 70 471 120 HOH HOH . F 4 HOH A 71 472 121 HOH HOH . F 4 HOH A 72 473 122 HOH HOH . F 4 HOH A 73 474 125 HOH HOH . F 4 HOH A 74 475 127 HOH HOH . F 4 HOH A 75 476 135 HOH HOH . F 4 HOH A 76 477 136 HOH HOH . F 4 HOH A 77 478 137 HOH HOH . F 4 HOH A 78 479 138 HOH HOH . F 4 HOH A 79 480 140 HOH HOH . F 4 HOH A 80 481 141 HOH HOH . F 4 HOH A 81 482 143 HOH HOH . F 4 HOH A 82 483 144 HOH HOH . F 4 HOH A 83 484 146 HOH HOH . F 4 HOH A 84 485 151 HOH HOH . F 4 HOH A 85 486 155 HOH HOH . F 4 HOH A 86 487 156 HOH HOH . F 4 HOH A 87 488 158 HOH HOH . F 4 HOH A 88 489 167 HOH HOH . F 4 HOH A 89 490 168 HOH HOH . F 4 HOH A 90 491 169 HOH HOH . F 4 HOH A 91 492 170 HOH HOH . F 4 HOH A 92 493 173 HOH HOH . F 4 HOH A 93 494 174 HOH HOH . F 4 HOH A 94 495 182 HOH HOH . F 4 HOH A 95 496 184 HOH HOH . F 4 HOH A 96 497 185 HOH HOH . F 4 HOH A 97 498 186 HOH HOH . F 4 HOH A 98 499 188 HOH HOH . F 4 HOH A 99 500 191 HOH HOH . F 4 HOH A 100 501 193 HOH HOH . F 4 HOH A 101 502 196 HOH HOH . F 4 HOH A 102 503 200 HOH HOH . F 4 HOH A 103 504 201 HOH HOH . F 4 HOH A 104 505 202 HOH HOH . F 4 HOH A 105 506 204 HOH HOH . F 4 HOH A 106 507 205 HOH HOH . F 4 HOH A 107 508 207 HOH HOH . F 4 HOH A 108 509 211 HOH HOH . F 4 HOH A 109 510 214 HOH HOH . F 4 HOH A 110 511 217 HOH HOH . F 4 HOH A 111 512 222 HOH HOH . F 4 HOH A 112 513 226 HOH HOH . F 4 HOH A 113 514 227 HOH HOH . F 4 HOH A 114 515 229 HOH HOH . F 4 HOH A 115 516 231 HOH HOH . F 4 HOH A 116 517 232 HOH HOH . F 4 HOH A 117 518 234 HOH HOH . F 4 HOH A 118 519 236 HOH HOH . F 4 HOH A 119 520 237 HOH HOH . F 4 HOH A 120 521 239 HOH HOH . F 4 HOH A 121 522 240 HOH HOH . F 4 HOH A 122 523 241 HOH HOH . F 4 HOH A 123 524 243 HOH HOH . F 4 HOH A 124 525 244 HOH HOH . F 4 HOH A 125 526 245 HOH HOH . F 4 HOH A 126 527 246 HOH HOH . F 4 HOH A 127 528 248 HOH HOH . F 4 HOH A 128 529 250 HOH HOH . F 4 HOH A 129 530 252 HOH HOH . F 4 HOH A 130 531 253 HOH HOH . F 4 HOH A 131 532 254 HOH HOH . F 4 HOH A 132 533 255 HOH HOH . F 4 HOH A 133 534 261 HOH HOH . F 4 HOH A 134 535 262 HOH HOH . F 4 HOH A 135 536 263 HOH HOH . F 4 HOH A 136 537 265 HOH HOH . F 4 HOH A 137 538 267 HOH HOH . F 4 HOH A 138 539 268 HOH HOH . F 4 HOH A 139 540 269 HOH HOH . F 4 HOH A 140 541 271 HOH HOH . F 4 HOH A 141 542 272 HOH HOH . F 4 HOH A 142 543 275 HOH HOH . F 4 HOH A 143 544 276 HOH HOH . F 4 HOH A 144 545 277 HOH HOH . G 4 HOH B 1 502 1 HOH HOH . G 4 HOH B 2 503 6 HOH HOH . G 4 HOH B 3 504 8 HOH HOH . G 4 HOH B 4 505 10 HOH HOH . G 4 HOH B 5 506 14 HOH HOH . G 4 HOH B 6 507 18 HOH HOH . G 4 HOH B 7 508 20 HOH HOH . G 4 HOH B 8 509 25 HOH HOH . G 4 HOH B 9 510 28 HOH HOH . G 4 HOH B 10 511 35 HOH HOH . G 4 HOH B 11 512 38 HOH HOH . G 4 HOH B 12 513 41 HOH HOH . G 4 HOH B 13 514 43 HOH HOH . G 4 HOH B 14 515 46 HOH HOH . G 4 HOH B 15 516 48 HOH HOH . G 4 HOH B 16 517 50 HOH HOH . G 4 HOH B 17 518 51 HOH HOH . G 4 HOH B 18 519 55 HOH HOH . G 4 HOH B 19 520 56 HOH HOH . G 4 HOH B 20 521 57 HOH HOH . G 4 HOH B 21 522 58 HOH HOH . G 4 HOH B 22 523 64 HOH HOH . G 4 HOH B 23 524 65 HOH HOH . G 4 HOH B 24 525 67 HOH HOH . G 4 HOH B 25 526 69 HOH HOH . G 4 HOH B 26 527 70 HOH HOH . G 4 HOH B 27 528 71 HOH HOH . G 4 HOH B 28 529 74 HOH HOH . G 4 HOH B 29 530 75 HOH HOH . G 4 HOH B 30 531 77 HOH HOH . G 4 HOH B 31 532 82 HOH HOH . G 4 HOH B 32 533 83 HOH HOH . G 4 HOH B 33 534 84 HOH HOH . G 4 HOH B 34 535 85 HOH HOH . G 4 HOH B 35 536 86 HOH HOH . G 4 HOH B 36 537 87 HOH HOH . G 4 HOH B 37 538 88 HOH HOH . G 4 HOH B 38 539 91 HOH HOH . G 4 HOH B 39 540 97 HOH HOH . G 4 HOH B 40 541 102 HOH HOH . G 4 HOH B 41 542 105 HOH HOH . G 4 HOH B 42 543 106 HOH HOH . G 4 HOH B 43 544 108 HOH HOH . G 4 HOH B 44 545 109 HOH HOH . G 4 HOH B 45 546 110 HOH HOH . G 4 HOH B 46 547 112 HOH HOH . G 4 HOH B 47 548 115 HOH HOH . G 4 HOH B 48 549 116 HOH HOH . G 4 HOH B 49 550 117 HOH HOH . G 4 HOH B 50 551 119 HOH HOH . G 4 HOH B 51 552 123 HOH HOH . G 4 HOH B 52 553 124 HOH HOH . G 4 HOH B 53 554 126 HOH HOH . G 4 HOH B 54 555 128 HOH HOH . G 4 HOH B 55 556 129 HOH HOH . G 4 HOH B 56 557 130 HOH HOH . G 4 HOH B 57 558 131 HOH HOH . G 4 HOH B 58 559 132 HOH HOH . G 4 HOH B 59 560 133 HOH HOH . G 4 HOH B 60 561 134 HOH HOH . G 4 HOH B 61 562 139 HOH HOH . G 4 HOH B 62 563 142 HOH HOH . G 4 HOH B 63 564 145 HOH HOH . G 4 HOH B 64 565 147 HOH HOH . G 4 HOH B 65 566 148 HOH HOH . G 4 HOH B 66 567 149 HOH HOH . G 4 HOH B 67 568 150 HOH HOH . G 4 HOH B 68 569 152 HOH HOH . G 4 HOH B 69 570 153 HOH HOH . G 4 HOH B 70 571 154 HOH HOH . G 4 HOH B 71 572 157 HOH HOH . G 4 HOH B 72 573 161 HOH HOH . G 4 HOH B 73 574 162 HOH HOH . G 4 HOH B 74 575 163 HOH HOH . G 4 HOH B 75 576 164 HOH HOH . G 4 HOH B 76 577 165 HOH HOH . G 4 HOH B 77 578 166 HOH HOH . G 4 HOH B 78 579 171 HOH HOH . G 4 HOH B 79 580 172 HOH HOH . G 4 HOH B 80 581 175 HOH HOH . G 4 HOH B 81 582 176 HOH HOH . G 4 HOH B 82 583 177 HOH HOH . G 4 HOH B 83 584 178 HOH HOH . G 4 HOH B 84 585 179 HOH HOH . G 4 HOH B 85 586 180 HOH HOH . G 4 HOH B 86 587 181 HOH HOH . G 4 HOH B 87 588 183 HOH HOH . G 4 HOH B 88 589 187 HOH HOH . G 4 HOH B 89 590 189 HOH HOH . G 4 HOH B 90 591 190 HOH HOH . G 4 HOH B 91 592 192 HOH HOH . G 4 HOH B 92 593 194 HOH HOH . G 4 HOH B 93 594 195 HOH HOH . G 4 HOH B 94 595 197 HOH HOH . G 4 HOH B 95 596 198 HOH HOH . G 4 HOH B 96 597 199 HOH HOH . G 4 HOH B 97 598 203 HOH HOH . G 4 HOH B 98 599 206 HOH HOH . G 4 HOH B 99 600 208 HOH HOH . G 4 HOH B 100 601 209 HOH HOH . G 4 HOH B 101 602 210 HOH HOH . G 4 HOH B 102 603 212 HOH HOH . G 4 HOH B 103 604 213 HOH HOH . G 4 HOH B 104 605 215 HOH HOH . G 4 HOH B 105 606 216 HOH HOH . G 4 HOH B 106 607 218 HOH HOH . G 4 HOH B 107 608 219 HOH HOH . G 4 HOH B 108 609 220 HOH HOH . G 4 HOH B 109 610 221 HOH HOH . G 4 HOH B 110 611 223 HOH HOH . G 4 HOH B 111 612 224 HOH HOH . G 4 HOH B 112 613 225 HOH HOH . G 4 HOH B 113 614 228 HOH HOH . G 4 HOH B 114 615 230 HOH HOH . G 4 HOH B 115 616 233 HOH HOH . G 4 HOH B 116 617 235 HOH HOH . G 4 HOH B 117 618 238 HOH HOH . G 4 HOH B 118 619 242 HOH HOH . G 4 HOH B 119 620 247 HOH HOH . G 4 HOH B 120 621 249 HOH HOH . G 4 HOH B 121 622 251 HOH HOH . G 4 HOH B 122 623 256 HOH HOH . G 4 HOH B 123 624 257 HOH HOH . G 4 HOH B 124 625 258 HOH HOH . G 4 HOH B 125 626 259 HOH HOH . G 4 HOH B 126 627 260 HOH HOH . G 4 HOH B 127 628 264 HOH HOH . G 4 HOH B 128 629 266 HOH HOH . G 4 HOH B 129 630 270 HOH HOH . G 4 HOH B 130 631 273 HOH HOH . G 4 HOH B 131 632 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . E 3 5.555 -9.611 43.412 1 30.18 ? C1 CIT 501 B 1 HETATM 2 O O1 CIT . . . E 3 4.677 -9.416 44.273 1 27.93 ? O1 CIT 501 B 1 HETATM 3 O O2 CIT . . . E 3 6.601 -10.257 43.613 1 33.38 ? O2 CIT 501 B 1 HETATM 4 C C2 CIT . . . E 3 5.385 -9.164 41.996 1 25.28 ? C2 CIT 501 B 1 HETATM 5 C C3 CIT . . . E 3 3.888 -8.677 41.808 1 30.37 ? C3 CIT 501 B 1 HETATM 6 O O7 CIT . . . E 3 3.767 -7.746 42.784 1 41.82 ? O7 CIT 501 B 1 HETATM 7 C C4 CIT . . . E 3 3.829 -7.942 40.416 1 29.89 ? C4 CIT 501 B 1 HETATM 8 C C5 CIT . . . E 3 4.773 -6.741 40.196 1 31.13 ? C5 CIT 501 B 1 HETATM 9 O O3 CIT . . . E 3 4.812 -5.69 40.966 1 36.99 ? O3 CIT 501 B 1 HETATM 10 O O4 CIT . . . E 3 5.545 -6.867 39.136 1 29.46 ? O4 CIT 501 B 1 HETATM 11 C C6 CIT . . . E 3 2.868 -9.666 41.835 1 36.76 ? C6 CIT 501 B 1 HETATM 12 O O5 CIT . . . E 3 1.755 -9.389 42.151 1 39.08 ? O5 CIT 501 B 1 HETATM 13 O O6 CIT . . . E 3 2.987 -10.88 41.685 1 34.46 ? O6 CIT 501 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 453 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #