data_2DU8 # _model_server_result.job_id PrqS1yzXAcNN2Yfg4AzmTw _model_server_result.datetime_utc '2024-11-23 22:56:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2du8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":352}' # _entry.id 2DU8 # _exptl.entry_id 2DU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DU8 _cell.length_a 150.976 _cell.length_b 183.184 _cell.length_c 51.075 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 A,B,E,F,G,H,M,N 3 1 C,D,I,J,K,L,O,P 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 183.184 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 70 n n C O2 BEZ sing 71 n n C C1 BEZ sing 72 n n O2 HO2 BEZ sing 73 n n C1 C2 BEZ doub 74 n y C1 C6 BEZ sing 75 n y C2 C3 BEZ sing 76 n y C2 H2 BEZ sing 77 n n C3 C4 BEZ doub 78 n y C3 H3 BEZ sing 79 n n C4 C5 BEZ sing 80 n y C4 H4 BEZ sing 81 n n C5 C6 BEZ doub 82 n y C5 H5 BEZ sing 83 n n C6 H6 BEZ sing 84 n n # _atom_sites.entry_id 2DU8 _atom_sites.fract_transf_matrix[1][1] 0.006624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 351 351 FAD FAD . F 3 BEZ A 1 352 352 BEZ BEZ . G 2 FAD B 1 1351 1351 FAD FAD . H 3 BEZ B 1 1352 1352 BEZ BEZ . I 2 FAD G 1 2351 2351 FAD FAD . J 3 BEZ G 1 2352 2352 BEZ BEZ . K 2 FAD J 1 3351 3351 FAD FAD . L 3 BEZ J 1 3352 3352 BEZ BEZ . M 4 HOH A 1 353 5 HOH HOH . M 4 HOH A 2 354 8 HOH HOH . M 4 HOH A 3 355 11 HOH HOH . M 4 HOH A 4 356 16 HOH HOH . M 4 HOH A 5 357 17 HOH HOH . M 4 HOH A 6 358 22 HOH HOH . M 4 HOH A 7 359 27 HOH HOH . M 4 HOH A 8 360 30 HOH HOH . M 4 HOH A 9 361 45 HOH HOH . M 4 HOH A 10 362 47 HOH HOH . M 4 HOH A 11 363 48 HOH HOH . M 4 HOH A 12 364 60 HOH HOH . M 4 HOH A 13 365 69 HOH HOH . M 4 HOH A 14 366 72 HOH HOH . M 4 HOH A 15 367 75 HOH HOH . M 4 HOH A 16 368 77 HOH HOH . M 4 HOH A 17 369 82 HOH HOH . M 4 HOH A 18 370 93 HOH HOH . M 4 HOH A 19 371 94 HOH HOH . M 4 HOH A 20 372 95 HOH HOH . M 4 HOH A 21 373 97 HOH HOH . M 4 HOH A 22 374 99 HOH HOH . M 4 HOH A 23 375 103 HOH HOH . M 4 HOH A 24 376 105 HOH HOH . M 4 HOH A 25 377 108 HOH HOH . M 4 HOH A 26 378 112 HOH HOH . M 4 HOH A 27 379 113 HOH HOH . M 4 HOH A 28 380 118 HOH HOH . M 4 HOH A 29 381 119 HOH HOH . M 4 HOH A 30 382 121 HOH HOH . M 4 HOH A 31 383 128 HOH HOH . M 4 HOH A 32 384 129 HOH HOH . M 4 HOH A 33 385 130 HOH HOH . M 4 HOH A 34 386 131 HOH HOH . M 4 HOH A 35 387 132 HOH HOH . M 4 HOH A 36 388 135 HOH HOH . M 4 HOH A 37 389 144 HOH HOH . M 4 HOH A 38 390 146 HOH HOH . M 4 HOH A 39 391 147 HOH HOH . M 4 HOH A 40 392 148 HOH HOH . M 4 HOH A 41 393 149 HOH HOH . M 4 HOH A 42 394 150 HOH HOH . M 4 HOH A 43 395 163 HOH HOH . M 4 HOH A 44 396 164 HOH HOH . M 4 HOH A 45 397 165 HOH HOH . M 4 HOH A 46 398 167 HOH HOH . M 4 HOH A 47 399 168 HOH HOH . M 4 HOH A 48 400 174 HOH HOH . M 4 HOH A 49 401 176 HOH HOH . M 4 HOH A 50 402 177 HOH HOH . M 4 HOH A 51 403 178 HOH HOH . M 4 HOH A 52 404 179 HOH HOH . M 4 HOH A 53 405 182 HOH HOH . M 4 HOH A 54 406 191 HOH HOH . M 4 HOH A 55 407 205 HOH HOH . M 4 HOH A 56 408 206 HOH HOH . M 4 HOH A 57 409 212 HOH HOH . M 4 HOH A 58 410 213 HOH HOH . M 4 HOH A 59 411 222 HOH HOH . M 4 HOH A 60 412 223 HOH HOH . M 4 HOH A 61 413 230 HOH HOH . M 4 HOH A 62 414 237 HOH HOH . M 4 HOH A 63 415 242 HOH HOH . M 4 HOH A 64 416 243 HOH HOH . M 4 HOH A 65 417 247 HOH HOH . M 4 HOH A 66 418 249 HOH HOH . M 4 HOH A 67 419 250 HOH HOH . M 4 HOH A 68 420 251 HOH HOH . M 4 HOH A 69 421 254 HOH HOH . M 4 HOH A 70 422 255 HOH HOH . M 4 HOH A 71 423 256 HOH HOH . N 4 HOH B 1 4 4 HOH HOH . N 4 HOH B 2 6 6 HOH HOH . N 4 HOH B 3 7 7 HOH HOH . N 4 HOH B 4 14 14 HOH HOH . N 4 HOH B 5 19 19 HOH HOH . N 4 HOH B 6 24 24 HOH HOH . N 4 HOH B 7 25 25 HOH HOH . N 4 HOH B 8 29 29 HOH HOH . N 4 HOH B 9 36 36 HOH HOH . N 4 HOH B 10 38 38 HOH HOH . N 4 HOH B 11 39 39 HOH HOH . N 4 HOH B 12 43 43 HOH HOH . N 4 HOH B 13 50 50 HOH HOH . N 4 HOH B 14 53 53 HOH HOH . N 4 HOH B 15 54 54 HOH HOH . N 4 HOH B 16 56 56 HOH HOH . N 4 HOH B 17 58 58 HOH HOH . N 4 HOH B 18 61 61 HOH HOH . N 4 HOH B 19 63 63 HOH HOH . N 4 HOH B 20 64 64 HOH HOH . N 4 HOH B 21 65 65 HOH HOH . N 4 HOH B 22 68 68 HOH HOH . N 4 HOH B 23 71 71 HOH HOH . N 4 HOH B 24 73 73 HOH HOH . N 4 HOH B 25 76 76 HOH HOH . N 4 HOH B 26 78 78 HOH HOH . N 4 HOH B 27 80 80 HOH HOH . N 4 HOH B 28 85 85 HOH HOH . N 4 HOH B 29 86 86 HOH HOH . N 4 HOH B 30 87 87 HOH HOH . N 4 HOH B 31 92 92 HOH HOH . N 4 HOH B 32 98 98 HOH HOH . N 4 HOH B 33 100 100 HOH HOH . N 4 HOH B 34 101 101 HOH HOH . N 4 HOH B 35 107 107 HOH HOH . N 4 HOH B 36 109 109 HOH HOH . N 4 HOH B 37 114 114 HOH HOH . N 4 HOH B 38 115 115 HOH HOH . N 4 HOH B 39 120 120 HOH HOH . N 4 HOH B 40 127 127 HOH HOH . N 4 HOH B 41 133 133 HOH HOH . N 4 HOH B 42 134 134 HOH HOH . N 4 HOH B 43 136 136 HOH HOH . N 4 HOH B 44 137 137 HOH HOH . N 4 HOH B 45 138 138 HOH HOH . N 4 HOH B 46 139 139 HOH HOH . N 4 HOH B 47 140 140 HOH HOH . N 4 HOH B 48 141 141 HOH HOH . N 4 HOH B 49 142 142 HOH HOH . N 4 HOH B 50 143 143 HOH HOH . N 4 HOH B 51 152 152 HOH HOH . N 4 HOH B 52 155 155 HOH HOH . N 4 HOH B 53 156 156 HOH HOH . N 4 HOH B 54 169 169 HOH HOH . N 4 HOH B 55 170 170 HOH HOH . N 4 HOH B 56 175 175 HOH HOH . N 4 HOH B 57 180 180 HOH HOH . N 4 HOH B 58 181 181 HOH HOH . N 4 HOH B 59 183 183 HOH HOH . N 4 HOH B 60 184 184 HOH HOH . N 4 HOH B 61 194 194 HOH HOH . N 4 HOH B 62 195 195 HOH HOH . N 4 HOH B 63 197 197 HOH HOH . N 4 HOH B 64 198 198 HOH HOH . N 4 HOH B 65 199 199 HOH HOH . N 4 HOH B 66 200 200 HOH HOH . N 4 HOH B 67 201 201 HOH HOH . N 4 HOH B 68 202 202 HOH HOH . N 4 HOH B 69 203 203 HOH HOH . N 4 HOH B 70 214 214 HOH HOH . N 4 HOH B 71 216 216 HOH HOH . N 4 HOH B 72 224 224 HOH HOH . N 4 HOH B 73 225 225 HOH HOH . N 4 HOH B 74 234 234 HOH HOH . N 4 HOH B 75 235 235 HOH HOH . N 4 HOH B 76 236 236 HOH HOH . N 4 HOH B 77 238 238 HOH HOH . N 4 HOH B 78 239 239 HOH HOH . N 4 HOH B 79 240 240 HOH HOH . N 4 HOH B 80 241 241 HOH HOH . N 4 HOH B 81 248 248 HOH HOH . N 4 HOH B 82 252 252 HOH HOH . N 4 HOH B 83 253 253 HOH HOH . O 4 HOH G 1 1 1 HOH HOH . O 4 HOH G 2 3 3 HOH HOH . O 4 HOH G 3 10 10 HOH HOH . O 4 HOH G 4 12 12 HOH HOH . O 4 HOH G 5 13 13 HOH HOH . O 4 HOH G 6 18 18 HOH HOH . O 4 HOH G 7 21 21 HOH HOH . O 4 HOH G 8 23 23 HOH HOH . O 4 HOH G 9 26 26 HOH HOH . O 4 HOH G 10 28 28 HOH HOH . O 4 HOH G 11 32 32 HOH HOH . O 4 HOH G 12 33 33 HOH HOH . O 4 HOH G 13 37 37 HOH HOH . O 4 HOH G 14 40 40 HOH HOH . O 4 HOH G 15 41 41 HOH HOH . O 4 HOH G 16 46 46 HOH HOH . O 4 HOH G 17 49 49 HOH HOH . O 4 HOH G 18 51 51 HOH HOH . O 4 HOH G 19 55 55 HOH HOH . O 4 HOH G 20 57 57 HOH HOH . O 4 HOH G 21 62 62 HOH HOH . O 4 HOH G 22 66 66 HOH HOH . O 4 HOH G 23 74 74 HOH HOH . O 4 HOH G 24 79 79 HOH HOH . O 4 HOH G 25 81 81 HOH HOH . O 4 HOH G 26 83 83 HOH HOH . O 4 HOH G 27 89 89 HOH HOH . O 4 HOH G 28 91 91 HOH HOH . O 4 HOH G 29 96 96 HOH HOH . O 4 HOH G 30 102 102 HOH HOH . O 4 HOH G 31 106 106 HOH HOH . O 4 HOH G 32 110 110 HOH HOH . O 4 HOH G 33 116 116 HOH HOH . O 4 HOH G 34 123 123 HOH HOH . O 4 HOH G 35 124 124 HOH HOH . O 4 HOH G 36 151 151 HOH HOH . O 4 HOH G 37 153 153 HOH HOH . O 4 HOH G 38 154 154 HOH HOH . O 4 HOH G 39 157 157 HOH HOH . O 4 HOH G 40 158 158 HOH HOH . O 4 HOH G 41 159 159 HOH HOH . O 4 HOH G 42 162 162 HOH HOH . O 4 HOH G 43 171 171 HOH HOH . O 4 HOH G 44 185 185 HOH HOH . O 4 HOH G 45 187 187 HOH HOH . O 4 HOH G 46 188 188 HOH HOH . O 4 HOH G 47 193 193 HOH HOH . O 4 HOH G 48 204 204 HOH HOH . O 4 HOH G 49 208 208 HOH HOH . O 4 HOH G 50 209 209 HOH HOH . O 4 HOH G 51 211 211 HOH HOH . O 4 HOH G 52 215 215 HOH HOH . O 4 HOH G 53 217 217 HOH HOH . O 4 HOH G 54 218 218 HOH HOH . O 4 HOH G 55 219 219 HOH HOH . O 4 HOH G 56 220 220 HOH HOH . O 4 HOH G 57 221 221 HOH HOH . O 4 HOH G 58 226 226 HOH HOH . O 4 HOH G 59 227 227 HOH HOH . O 4 HOH G 60 229 229 HOH HOH . O 4 HOH G 61 232 232 HOH HOH . O 4 HOH G 62 233 233 HOH HOH . P 4 HOH J 1 2 2 HOH HOH . P 4 HOH J 2 9 9 HOH HOH . P 4 HOH J 3 15 15 HOH HOH . P 4 HOH J 4 20 20 HOH HOH . P 4 HOH J 5 31 31 HOH HOH . P 4 HOH J 6 34 34 HOH HOH . P 4 HOH J 7 35 35 HOH HOH . P 4 HOH J 8 42 42 HOH HOH . P 4 HOH J 9 44 44 HOH HOH . P 4 HOH J 10 52 52 HOH HOH . P 4 HOH J 11 59 59 HOH HOH . P 4 HOH J 12 67 67 HOH HOH . P 4 HOH J 13 70 70 HOH HOH . P 4 HOH J 14 84 84 HOH HOH . P 4 HOH J 15 88 88 HOH HOH . P 4 HOH J 16 90 90 HOH HOH . P 4 HOH J 17 104 104 HOH HOH . P 4 HOH J 18 111 111 HOH HOH . P 4 HOH J 19 117 117 HOH HOH . P 4 HOH J 20 122 122 HOH HOH . P 4 HOH J 21 125 125 HOH HOH . P 4 HOH J 22 126 126 HOH HOH . P 4 HOH J 23 145 145 HOH HOH . P 4 HOH J 24 160 160 HOH HOH . P 4 HOH J 25 161 161 HOH HOH . P 4 HOH J 26 166 166 HOH HOH . P 4 HOH J 27 172 172 HOH HOH . P 4 HOH J 28 173 173 HOH HOH . P 4 HOH J 29 186 186 HOH HOH . P 4 HOH J 30 189 189 HOH HOH . P 4 HOH J 31 190 190 HOH HOH . P 4 HOH J 32 192 192 HOH HOH . P 4 HOH J 33 196 196 HOH HOH . P 4 HOH J 34 207 207 HOH HOH . P 4 HOH J 35 210 210 HOH HOH . P 4 HOH J 36 228 228 HOH HOH . P 4 HOH J 37 231 231 HOH HOH . P 4 HOH J 38 244 244 HOH HOH . P 4 HOH J 39 245 245 HOH HOH . P 4 HOH J 40 246 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . F 3 43.497 30.85 17.111 1 61.29 ? C BEZ 352 A 1 HETATM 2 O O1 BEZ . . . F 3 42.873 31.02 18.19 1 60.54 ? O1 BEZ 352 A 1 HETATM 3 O O2 BEZ . . . F 3 43.43 29.78 16.458 1 60.78 ? O2 BEZ 352 A 1 HETATM 4 C C1 BEZ . . . F 3 44.369 31.956 16.58 1 62.03 ? C1 BEZ 352 A 1 HETATM 5 C C2 BEZ . . . F 3 44.637 33.088 17.364 1 62.21 ? C2 BEZ 352 A 1 HETATM 6 C C3 BEZ . . . F 3 45.45 34.113 16.878 1 61.49 ? C3 BEZ 352 A 1 HETATM 7 C C4 BEZ . . . F 3 45.995 34.006 15.6 1 61.99 ? C4 BEZ 352 A 1 HETATM 8 C C5 BEZ . . . F 3 45.741 32.88 14.809 1 61.14 ? C5 BEZ 352 A 1 HETATM 9 C C6 BEZ . . . F 3 44.935 31.856 15.302 1 61.41 ? C6 BEZ 352 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #