data_2DUV # _model_server_result.job_id uhEalX_gDA_cC-IEsw-flQ _model_server_result.datetime_utc '2024-11-23 00:34:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2duv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 2DUV # _exptl.entry_id 2DUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.406 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3,4-DIHYDROXYPHENYL)-8-(1,1-DIOXIDOISOTHIAZOLIDIN-2-YL)-3-HYDROXY-6-METHYL-4H-CHROMEN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DUV _cell.length_a 53.629 _cell.length_b 71.389 _cell.length_c 72.061 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H17 N O7 S' _chem_comp.formula_weight 403.406 _chem_comp.id 371 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3,4-DIHYDROXYPHENYL)-8-(1,1-DIOXIDOISOTHIAZOLIDIN-2-YL)-3-HYDROXY-6-METHYL-4H-CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 371 sing 1 n y O1 C8 371 sing 2 n y C1 C10 371 sing 3 n y C1 C2 371 doub 4 n y C2 O3 371 sing 5 n n C2 C3 371 sing 6 n y C3 C9 371 sing 7 n y C3 O2 371 doub 8 n n C4 C9 371 doub 9 n y C4 C5 371 sing 10 n y C4 H4 371 sing 11 n n C5 C6 371 doub 12 n y C5 C16 371 sing 13 n n C6 C7 371 sing 14 n y C6 H6 371 sing 15 n n C7 N1 371 sing 16 n n C7 C8 371 doub 17 n y C8 C9 371 sing 18 n y C10 C11 371 doub 19 n y C10 C15 371 sing 20 n y C11 C12 371 sing 21 n y C11 H11 371 sing 22 n n C12 C13 371 doub 23 n y C12 H12 371 sing 24 n n C13 O5 371 sing 25 n n C13 C14 371 sing 26 n y C14 O4 371 sing 27 n n C14 C15 371 doub 28 n y C15 H15 371 sing 29 n n C16 H161 371 sing 30 n n C16 H162 371 sing 31 n n C16 H163 371 sing 32 n n O3 HO3 371 sing 33 n n O4 HO4 371 sing 34 n n O5 HO5 371 sing 35 n n C17 C19 371 sing 36 n n C17 C18 371 sing 37 n n C17 H171 371 sing 38 n n C17 H172 371 sing 39 n n C18 N1 371 sing 40 n n C18 H181 371 sing 41 n n C18 H182 371 sing 42 n n N1 S1 371 sing 43 n n S1 C19 371 sing 44 n n S1 O7 371 doub 45 n n S1 O6 371 doub 46 n n C19 H191 371 sing 47 n n C19 H192 371 sing 48 n n # _atom_sites.entry_id 2DUV _atom_sites.fract_transf_matrix[1][1] 0.018647 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 371 A 1 501 501 371 371 . C 3 HOH A 1 502 1 HOH TIP . C 3 HOH A 2 503 2 HOH TIP . C 3 HOH A 3 504 3 HOH TIP . C 3 HOH A 4 505 4 HOH TIP . C 3 HOH A 5 506 5 HOH TIP . C 3 HOH A 6 507 6 HOH TIP . C 3 HOH A 7 508 7 HOH TIP . C 3 HOH A 8 509 8 HOH TIP . C 3 HOH A 9 510 9 HOH TIP . C 3 HOH A 10 511 10 HOH TIP . C 3 HOH A 11 512 11 HOH TIP . C 3 HOH A 12 513 12 HOH TIP . C 3 HOH A 13 514 13 HOH TIP . C 3 HOH A 14 515 14 HOH TIP . C 3 HOH A 15 516 15 HOH TIP . C 3 HOH A 16 517 16 HOH TIP . C 3 HOH A 17 518 17 HOH TIP . C 3 HOH A 18 519 18 HOH TIP . C 3 HOH A 19 520 19 HOH TIP . C 3 HOH A 20 521 20 HOH TIP . C 3 HOH A 21 522 21 HOH TIP . C 3 HOH A 22 523 22 HOH TIP . C 3 HOH A 23 524 23 HOH TIP . C 3 HOH A 24 525 24 HOH TIP . C 3 HOH A 25 526 25 HOH TIP . C 3 HOH A 26 527 26 HOH TIP . C 3 HOH A 27 528 27 HOH TIP . C 3 HOH A 28 529 28 HOH TIP . C 3 HOH A 29 530 29 HOH TIP . C 3 HOH A 30 531 30 HOH TIP . C 3 HOH A 31 532 31 HOH TIP . C 3 HOH A 32 533 32 HOH TIP . C 3 HOH A 33 534 33 HOH TIP . C 3 HOH A 34 535 34 HOH TIP . C 3 HOH A 35 536 35 HOH TIP . C 3 HOH A 36 537 36 HOH TIP . C 3 HOH A 37 538 37 HOH TIP . C 3 HOH A 38 539 38 HOH TIP . C 3 HOH A 39 540 39 HOH TIP . C 3 HOH A 40 541 40 HOH TIP . C 3 HOH A 41 542 41 HOH TIP . C 3 HOH A 42 543 42 HOH TIP . C 3 HOH A 43 544 43 HOH TIP . C 3 HOH A 44 545 44 HOH TIP . C 3 HOH A 45 546 45 HOH TIP . C 3 HOH A 46 547 46 HOH TIP . C 3 HOH A 47 548 47 HOH TIP . C 3 HOH A 48 549 48 HOH TIP . C 3 HOH A 49 550 49 HOH TIP . C 3 HOH A 50 551 50 HOH TIP . C 3 HOH A 51 552 51 HOH TIP . C 3 HOH A 52 553 52 HOH TIP . C 3 HOH A 53 554 53 HOH TIP . C 3 HOH A 54 555 54 HOH TIP . C 3 HOH A 55 556 55 HOH TIP . C 3 HOH A 56 557 56 HOH TIP . C 3 HOH A 57 558 57 HOH TIP . C 3 HOH A 58 559 58 HOH TIP . C 3 HOH A 59 560 59 HOH TIP . C 3 HOH A 60 561 60 HOH TIP . C 3 HOH A 61 562 61 HOH TIP . C 3 HOH A 62 563 62 HOH TIP . C 3 HOH A 63 564 63 HOH TIP . C 3 HOH A 64 565 64 HOH TIP . C 3 HOH A 65 566 65 HOH TIP . C 3 HOH A 66 567 66 HOH TIP . C 3 HOH A 67 568 67 HOH TIP . C 3 HOH A 68 569 68 HOH TIP . C 3 HOH A 69 570 69 HOH TIP . C 3 HOH A 70 571 70 HOH TIP . C 3 HOH A 71 572 71 HOH TIP . C 3 HOH A 72 573 72 HOH TIP . C 3 HOH A 73 574 73 HOH TIP . C 3 HOH A 74 575 74 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 371 . . . B 2 26.782 29.083 26.843 1 30.93 ? O1 371 501 A 1 HETATM 2 C C1 371 . . . B 2 27.315 30.325 27.113 1 30.93 ? C1 371 501 A 1 HETATM 3 C C2 371 . . . B 2 26.727 31.188 28.023 1 30.93 ? C2 371 501 A 1 HETATM 4 C C3 371 . . . B 2 25.457 30.734 28.724 1 30.93 ? C3 371 501 A 1 HETATM 5 C C4 371 . . . B 2 23.736 28.865 28.987 1 30.93 ? C4 371 501 A 1 HETATM 6 C C5 371 . . . B 2 23.256 27.574 28.641 1 30.93 ? C5 371 501 A 1 HETATM 7 C C6 371 . . . B 2 23.978 26.784 27.685 1 30.93 ? C6 371 501 A 1 HETATM 8 C C7 371 . . . B 2 25.169 27.293 27.084 1 30.93 ? C7 371 501 A 1 HETATM 9 C C8 371 . . . B 2 25.624 28.591 27.443 1 30.93 ? C8 371 501 A 1 HETATM 10 C C9 371 . . . B 2 24.914 29.378 28.394 1 30.93 ? C9 371 501 A 1 HETATM 11 O O2 371 . . . B 2 24.981 31.556 29.517 1 30.93 ? O2 371 501 A 1 HETATM 12 C C10 371 . . . B 2 28.535 30.616 26.337 1 30.93 ? C10 371 501 A 1 HETATM 13 C C11 371 . . . B 2 28.847 31.924 25.836 1 30.93 ? C11 371 501 A 1 HETATM 14 C C12 371 . . . B 2 30.022 32.14 25.078 1 30.93 ? C12 371 501 A 1 HETATM 15 C C13 371 . . . B 2 30.876 31.049 24.819 1 30.93 ? C13 371 501 A 1 HETATM 16 C C14 371 . . . B 2 30.574 29.736 25.314 1 30.93 ? C14 371 501 A 1 HETATM 17 C C15 371 . . . B 2 29.411 29.529 26.066 1 30.93 ? C15 371 501 A 1 HETATM 18 C C16 371 . . . B 2 21.993 27.056 29.286 1 30.93 ? C16 371 501 A 1 HETATM 19 O O3 371 . . . B 2 27.177 32.444 28.364 1 30.93 ? O3 371 501 A 1 HETATM 20 O O4 371 . . . B 2 31.467 28.708 25.011 1 30.93 ? O4 371 501 A 1 HETATM 21 O O5 371 . . . B 2 32.023 31.202 24.084 1 30.93 ? O5 371 501 A 1 HETATM 22 C C17 371 . . . B 2 26.562 25.541 24.063 1 30.93 ? C17 371 501 A 1 HETATM 23 C C18 371 . . . B 2 25.459 26.366 24.779 1 30.93 ? C18 371 501 A 1 HETATM 24 N N1 371 . . . B 2 25.91 26.585 26.155 1 30.93 ? N1 371 501 A 1 HETATM 25 S S1 371 . . . B 2 27.357 25.898 26.419 1 30.93 ? S1 371 501 A 1 HETATM 26 C C19 371 . . . B 2 27.9 25.874 24.742 1 30.93 ? C19 371 501 A 1 HETATM 27 O O7 371 . . . B 2 27.086 24.562 26.866 1 30.93 ? O7 371 501 A 1 HETATM 28 O O6 371 . . . B 2 28.179 26.766 27.218 1 30.93 ? O6 371 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #