data_2DVH # _model_server_result.job_id 0q05oghV6NVti1fgoiew5g _model_server_result.datetime_utc '2025-02-05 18:59:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":80}' # _entry.id 2DVH # _exptl.entry_id 2DVH _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DVH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 10 A CYS 10 1_555 B CAB HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale2 A SG CYS 13 A CYS 13 1_555 B CAC HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc1 A NE2 HIS 14 A HIS 14 1_555 B FE HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 A SD MET 57 A MET 57 1_555 B FE HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 2DVH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 80 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HEC _pdbx_nonpoly_scheme.auth_mon_id HEC _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 0.553 4.048 -0.358 1 6.41 ? FE HEC 80 A 1 HETATM 2 C CHA HEC . . . B 2 1.071 4.872 2.915 1 5.52 ? CHA HEC 80 A 1 HETATM 3 C CHB HEC . . . B 2 -0.187 0.842 0.605 1 7.91 ? CHB HEC 80 A 1 HETATM 4 C CHC HEC . . . B 2 0.624 3.109 -3.598 1 6.02 ? CHC HEC 80 A 1 HETATM 5 C CHD HEC . . . B 2 0.675 7.334 -1.223 1 10.53 ? CHD HEC 80 A 1 HETATM 6 N NA HEC . . . B 2 0.557 3.043 1.378 1 6.22 ? NA HEC 80 A 1 HETATM 7 C C1A HEC . . . B 2 0.878 3.532 2.624 1 6.23 ? C1A HEC 80 A 1 HETATM 8 C C2A HEC . . . B 2 0.857 2.47 3.6 1 8.27 ? C2A HEC 80 A 1 HETATM 9 C C3A HEC . . . B 2 0.284 1.404 2.996 1 7.07 ? C3A HEC 80 A 1 HETATM 10 C C4A HEC . . . B 2 0.17 1.737 1.598 1 9.92 ? C4A HEC 80 A 1 HETATM 11 C CMA HEC . . . B 2 -0.125 0.097 3.614 1 7 ? CMA HEC 80 A 1 HETATM 12 C CAA HEC . . . B 2 1.308 2.581 5.028 1 7.29 ? CAA HEC 80 A 1 HETATM 13 C CBA HEC . . . B 2 0.157 2.773 6.023 1 11.15 ? CBA HEC 80 A 1 HETATM 14 C CGA HEC . . . B 2 0.244 4.058 6.836 1 22.27 ? CGA HEC 80 A 1 HETATM 15 O O1A HEC . . . B 2 1.343 4.429 7.238 1 18.65 ? O1A HEC 80 A 1 HETATM 16 O O2A HEC . . . B 2 -0.799 4.671 7.047 1 17.21 ? O2A HEC 80 A 1 HETATM 17 N NB HEC . . . B 2 0.252 2.335 -1.297 1 4.54 ? NB HEC 80 A 1 HETATM 18 C C1B HEC . . . B 2 -0.054 1.098 -0.754 1 10.91 ? C1B HEC 80 A 1 HETATM 19 C C2B HEC . . . B 2 -0.044 0.085 -1.784 1 5.88 ? C2B HEC 80 A 1 HETATM 20 C C3B HEC . . . B 2 0.351 0.709 -2.927 1 -0.05 ? C3B HEC 80 A 1 HETATM 21 C C4B HEC . . . B 2 0.386 2.124 -2.645 1 4.49 ? C4B HEC 80 A 1 HETATM 22 C CMB HEC . . . B 2 -0.28 -1.382 -1.555 1 4.31 ? CMB HEC 80 A 1 HETATM 23 C CAB HEC . . . B 2 0.777 0.131 -4.255 1 6.35 ? CAB HEC 80 A 1 HETATM 24 C CBB HEC . . . B 2 0.402 -1.309 -4.613 1 6.48 ? CBB HEC 80 A 1 HETATM 25 N NC HEC . . . B 2 0.55 5.036 -2.082 1 3.58 ? NC HEC 80 A 1 HETATM 26 C C1C HEC . . . B 2 0.549 4.478 -3.345 1 4.45 ? C1C HEC 80 A 1 HETATM 27 C C2C HEC . . . B 2 0.533 5.514 -4.349 1 5.77 ? C2C HEC 80 A 1 HETATM 28 C C3C HEC . . . B 2 0.766 6.692 -3.693 1 8.44 ? C3C HEC 80 A 1 HETATM 29 C C4C HEC . . . B 2 0.671 6.399 -2.266 1 11.13 ? C4C HEC 80 A 1 HETATM 30 C CMC HEC . . . B 2 0.354 5.24 -5.823 1 8.62 ? CMC HEC 80 A 1 HETATM 31 C CAC HEC . . . B 2 1.104 8.057 -4.262 1 3.39 ? CAC HEC 80 A 1 HETATM 32 C CBC HEC . . . B 2 0.616 8.367 -5.681 1 10.94 ? CBC HEC 80 A 1 HETATM 33 N ND HEC . . . B 2 0.675 5.755 0.662 1 4.28 ? ND HEC 80 A 1 HETATM 34 C C1D HEC . . . B 2 0.646 7.029 0.141 1 5.02 ? C1D HEC 80 A 1 HETATM 35 C C2D HEC . . . B 2 0.488 7.985 1.221 1 3.97 ? C2D HEC 80 A 1 HETATM 36 C C3D HEC . . . B 2 0.515 7.286 2.396 1 5.11 ? C3D HEC 80 A 1 HETATM 37 C C4D HEC . . . B 2 0.791 5.911 2.034 1 9.05 ? C4D HEC 80 A 1 HETATM 38 C CMD HEC . . . B 2 0.228 9.453 1.003 1 5.28 ? CMD HEC 80 A 1 HETATM 39 C CAD HEC . . . B 2 0.182 7.805 3.787 1 9.04 ? CAD HEC 80 A 1 HETATM 40 C CBD HEC . . . B 2 0.796 7.164 5.045 1 6.36 ? CBD HEC 80 A 1 HETATM 41 C CGD HEC . . . B 2 0.61 8.091 6.238 1 6.46 ? CGD HEC 80 A 1 HETATM 42 O O1D HEC . . . B 2 -0.168 7.759 7.127 1 8.25 ? O1D HEC 80 A 1 HETATM 43 O O2D HEC . . . B 2 1.254 9.137 6.254 1 15.15 ? O2D HEC 80 A 1 HETATM 44 H HHA HEC . . . B 2 1.442 5.095 3.905 1 0 ? HHA HEC 80 A 1 HETATM 45 H HHB HEC . . . B 2 -0.496 -0.144 0.936 1 0 ? HHB HEC 80 A 1 HETATM 46 H HHC HEC . . . B 2 0.959 2.749 -4.581 1 0 ? HHC HEC 80 A 1 HETATM 47 H HHD HEC . . . B 2 0.682 8.39 -1.476 1 0 ? HHD HEC 80 A 1 HETATM 48 H HMA1 HEC . . . B 2 -1.167 -0.096 3.367 1 0 ? HMA1 HEC 80 A 1 HETATM 49 H HMA2 HEC . . . B 2 -0.038 0.157 4.697 1 0 ? HMA2 HEC 80 A 1 HETATM 50 H HMA3 HEC . . . B 2 0.504 -0.708 3.239 1 0 ? HMA3 HEC 80 A 1 HETATM 51 H HAA1 HEC . . . B 2 1.816 1.65 5.278 1 0 ? HAA1 HEC 80 A 1 HETATM 52 H HAA2 HEC . . . B 2 2.058 3.365 5.103 1 0 ? HAA2 HEC 80 A 1 HETATM 53 H HBA1 HEC . . . B 2 -0.785 2.779 5.476 1 0 ? HBA1 HEC 80 A 1 HETATM 54 H HBA2 HEC . . . B 2 0.151 1.933 6.718 1 0 ? HBA2 HEC 80 A 1 HETATM 55 H HMB1 HEC . . . B 2 0.682 -1.891 -1.599 1 0 ? HMB1 HEC 80 A 1 HETATM 56 H HMB2 HEC . . . B 2 -0.942 -1.761 -2.324 1 0 ? HMB2 HEC 80 A 1 HETATM 57 H HMB3 HEC . . . B 2 -0.758 -1.584 -0.602 1 0 ? HMB3 HEC 80 A 1 HETATM 58 H HAB HEC . . . B 2 0.498 0.772 -5.085 1 0 ? HAB HEC 80 A 1 HETATM 59 H HBB1 HEC . . . B 2 0.931 -1.989 -3.951 1 0 ? HBB1 HEC 80 A 1 HETATM 60 H HBB2 HEC . . . B 2 -0.676 -1.442 -4.545 1 0 ? HBB2 HEC 80 A 1 HETATM 61 H HBB3 HEC . . . B 2 0.694 -1.526 -5.641 1 0 ? HBB3 HEC 80 A 1 HETATM 62 H HMC1 HEC . . . B 2 1.31 5.258 -6.343 1 0 ? HMC1 HEC 80 A 1 HETATM 63 H HMC2 HEC . . . B 2 -0.323 5.972 -6.258 1 0 ? HMC2 HEC 80 A 1 HETATM 64 H HMC3 HEC . . . B 2 -0.104 4.263 -5.971 1 0 ? HMC3 HEC 80 A 1 HETATM 65 H HAC HEC . . . B 2 0.665 8.822 -3.627 1 0 ? HAC HEC 80 A 1 HETATM 66 H HBC1 HEC . . . B 2 0.885 9.393 -5.925 1 0 ? HBC1 HEC 80 A 1 HETATM 67 H HBC2 HEC . . . B 2 1.099 7.72 -6.41 1 0 ? HBC2 HEC 80 A 1 HETATM 68 H HBC3 HEC . . . B 2 -0.467 8.26 -5.732 1 0 ? HBC3 HEC 80 A 1 HETATM 69 H HMD1 HEC . . . B 2 1.126 9.935 0.619 1 0 ? HMD1 HEC 80 A 1 HETATM 70 H HMD2 HEC . . . B 2 -0.583 9.579 0.285 1 0 ? HMD2 HEC 80 A 1 HETATM 71 H HMD3 HEC . . . B 2 -0.06 9.935 1.933 1 0 ? HMD3 HEC 80 A 1 HETATM 72 H HAD1 HEC . . . B 2 0.395 8.866 3.813 1 0 ? HAD1 HEC 80 A 1 HETATM 73 H HAD2 HEC . . . B 2 -0.896 7.705 3.898 1 0 ? HAD2 HEC 80 A 1 HETATM 74 H HBD1 HEC . . . B 2 0.264 6.243 5.275 1 0 ? HBD1 HEC 80 A 1 HETATM 75 H HBD2 HEC . . . B 2 1.86 6.93 4.952 1 0 ? HBD2 HEC 80 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 9422 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 75 #