data_2DVO # _model_server_result.job_id 3Nm5hjeb5S8-aA5K7s4Bjg _model_server_result.datetime_utc '2024-10-12 10:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 2DVO # _exptl.entry_id 2DVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 508.166 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "INOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DVO _cell.length_a 78.261 _cell.length_b 93.068 _cell.length_c 54.051 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 78.261 0 81.0765 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 65 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 65 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.571 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N4 O14 P3' _chem_comp.formula_weight 508.166 _chem_comp.id ITT _chem_comp.mon_nstd_flag . _chem_comp.name "INOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'INOSINE TRIPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ITT doub 160 n n PG O2G ITT sing 161 n n PG O3G ITT sing 162 n n PG O3B ITT sing 163 n n O2G H2G ITT sing 164 n n O3G H3G ITT sing 165 n n PB O1B ITT doub 166 n n PB O2B ITT sing 167 n n PB O3B ITT sing 168 n n PB O3A ITT sing 169 n n O2B H2B ITT sing 170 n n PA O1A ITT doub 171 n n PA O2A ITT sing 172 n n PA O3A ITT sing 173 n n PA O5' ITT sing 174 n n O2A H2A ITT sing 175 n n O5' C5' ITT sing 176 n n C5' C4' ITT sing 177 n n C5' "H5'1" ITT sing 178 n n C5' "H5'2" ITT sing 179 n n C4' O4' ITT sing 180 n n C4' C3' ITT sing 181 n n C4' H4' ITT sing 182 n n O4' C1' ITT sing 183 n n C3' O3' ITT sing 184 n n C3' C2' ITT sing 185 n n C3' H3' ITT sing 186 n n O3' H1 ITT sing 187 n n C2' O2' ITT sing 188 n n C2' C1' ITT sing 189 n n C2' H2' ITT sing 190 n n O2' H3 ITT sing 191 n n C1' N9 ITT sing 192 n n C1' H1' ITT sing 193 n n N9 C8 ITT sing 194 n y N9 C4 ITT sing 195 n y C8 N7 ITT doub 196 n y C8 H8 ITT sing 197 n n N7 C5 ITT sing 198 n y C5 C6 ITT sing 199 n y C5 C4 ITT doub 200 n y C6 O6 ITT sing 201 n n C6 N1 ITT doub 202 n y O6 HO6 ITT sing 203 n n N1 C2 ITT sing 204 n y C2 N3 ITT doub 205 n y C2 H2 ITT sing 206 n n N3 C4 ITT sing 207 n y # _atom_sites.entry_id 2DVO _atom_sites.fract_transf_matrix[1][1] 0.012778 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 3 ITT A 1 201 201 ITT XXX . D 4 HOH A 1 302 1 HOH HOH . D 4 HOH A 2 303 2 HOH HOH . D 4 HOH A 3 304 3 HOH HOH . D 4 HOH A 4 305 4 HOH HOH . D 4 HOH A 5 306 5 HOH HOH . D 4 HOH A 6 307 6 HOH HOH . D 4 HOH A 7 308 7 HOH HOH . D 4 HOH A 8 309 8 HOH HOH . D 4 HOH A 9 310 9 HOH HOH . D 4 HOH A 10 311 10 HOH HOH . D 4 HOH A 11 312 11 HOH HOH . D 4 HOH A 12 313 12 HOH HOH . D 4 HOH A 13 314 13 HOH HOH . D 4 HOH A 14 315 14 HOH HOH . D 4 HOH A 15 316 15 HOH HOH . D 4 HOH A 16 317 16 HOH HOH . D 4 HOH A 17 318 17 HOH HOH . D 4 HOH A 18 319 18 HOH HOH . D 4 HOH A 19 320 19 HOH HOH . D 4 HOH A 20 321 20 HOH HOH . D 4 HOH A 21 322 21 HOH HOH . D 4 HOH A 22 323 22 HOH HOH . D 4 HOH A 23 324 23 HOH HOH . D 4 HOH A 24 325 24 HOH HOH . D 4 HOH A 25 326 25 HOH HOH . D 4 HOH A 26 327 26 HOH HOH . D 4 HOH A 27 328 27 HOH HOH . D 4 HOH A 28 329 28 HOH HOH . D 4 HOH A 29 330 29 HOH HOH . D 4 HOH A 30 331 30 HOH HOH . D 4 HOH A 31 332 31 HOH HOH . D 4 HOH A 32 333 32 HOH HOH . D 4 HOH A 33 334 33 HOH HOH . D 4 HOH A 34 335 34 HOH HOH . D 4 HOH A 35 336 35 HOH HOH . D 4 HOH A 36 337 36 HOH HOH . D 4 HOH A 37 338 37 HOH HOH . D 4 HOH A 38 339 38 HOH HOH . D 4 HOH A 39 340 39 HOH HOH . D 4 HOH A 40 341 40 HOH HOH . D 4 HOH A 41 342 41 HOH HOH . D 4 HOH A 42 343 42 HOH HOH . D 4 HOH A 43 344 43 HOH HOH . D 4 HOH A 44 345 44 HOH HOH . D 4 HOH A 45 346 45 HOH HOH . D 4 HOH A 46 347 46 HOH HOH . D 4 HOH A 47 348 47 HOH HOH . D 4 HOH A 48 349 48 HOH HOH . D 4 HOH A 49 350 49 HOH HOH . D 4 HOH A 50 351 50 HOH HOH . D 4 HOH A 51 352 51 HOH HOH . D 4 HOH A 52 353 52 HOH HOH . D 4 HOH A 53 354 53 HOH HOH . D 4 HOH A 54 355 54 HOH HOH . D 4 HOH A 55 356 55 HOH HOH . D 4 HOH A 56 357 56 HOH HOH . D 4 HOH A 57 358 57 HOH HOH . D 4 HOH A 58 359 58 HOH HOH . D 4 HOH A 59 360 59 HOH HOH . D 4 HOH A 60 361 60 HOH HOH . D 4 HOH A 61 362 61 HOH HOH . D 4 HOH A 62 363 62 HOH HOH . D 4 HOH A 63 364 63 HOH HOH . D 4 HOH A 64 365 64 HOH HOH . D 4 HOH A 65 366 65 HOH HOH . D 4 HOH A 66 367 66 HOH HOH . D 4 HOH A 67 368 67 HOH HOH . D 4 HOH A 68 369 68 HOH HOH . D 4 HOH A 69 370 69 HOH HOH . D 4 HOH A 70 371 70 HOH HOH . D 4 HOH A 71 372 71 HOH HOH . D 4 HOH A 72 373 72 HOH HOH . D 4 HOH A 73 374 73 HOH HOH . D 4 HOH A 74 375 74 HOH HOH . D 4 HOH A 75 376 75 HOH HOH . D 4 HOH A 76 377 76 HOH HOH . D 4 HOH A 77 378 77 HOH HOH . D 4 HOH A 78 379 78 HOH HOH . D 4 HOH A 79 380 79 HOH HOH . D 4 HOH A 80 381 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ITT . . . C 3 49.542 59.202 33.933 1 22.52 ? PG ITT 201 A 1 HETATM 2 O O1G ITT . . . C 3 50.78 58.891 34.562 1 22.01 ? O1G ITT 201 A 1 HETATM 3 O O2G ITT . . . C 3 48.399 59.127 34.866 1 18.24 ? O2G ITT 201 A 1 HETATM 4 O O3G ITT . . . C 3 49.269 58.291 32.825 1 22.8 ? O3G ITT 201 A 1 HETATM 5 P PB ITT . . . C 3 48.743 62.047 33.953 1 28.07 ? PB ITT 201 A 1 HETATM 6 O O1B ITT . . . C 3 49.753 63.07 33.875 1 31.28 ? O1B ITT 201 A 1 HETATM 7 O O2B ITT . . . C 3 47.449 62.259 33.3 1 37.38 ? O2B ITT 201 A 1 HETATM 8 O O3B ITT . . . C 3 49.313 60.751 33.436 1 27.26 ? O3B ITT 201 A 1 HETATM 9 P PA ITT . . . C 3 48.714 62.398 36.765 1 34.07 ? PA ITT 201 A 1 HETATM 10 O O1A ITT . . . C 3 47.443 61.828 37.447 1 30.87 ? O1A ITT 201 A 1 HETATM 11 O O2A ITT . . . C 3 49.924 61.873 37.553 1 29.52 ? O2A ITT 201 A 1 HETATM 12 O O3A ITT . . . C 3 48.281 61.778 35.371 1 33.62 ? O3A ITT 201 A 1 HETATM 13 O O5' ITT . . . C 3 48.547 63.98 36.629 1 31.81 ? O5' ITT 201 A 1 HETATM 14 C C5' ITT . . . C 3 48.82 65.044 37.646 1 29.84 ? C5' ITT 201 A 1 HETATM 15 C C4' ITT . . . C 3 48.976 66.224 37.01 1 28.98 ? C4' ITT 201 A 1 HETATM 16 O O4' ITT . . . C 3 49.962 66.742 38.028 1 26.21 ? O4' ITT 201 A 1 HETATM 17 C C3' ITT . . . C 3 49.483 66.237 35.543 1 27.82 ? C3' ITT 201 A 1 HETATM 18 O O3' ITT . . . C 3 48.618 66.067 34.5 1 30.28 ? O3' ITT 201 A 1 HETATM 19 C C2' ITT . . . C 3 50.348 67.548 35.684 1 28.23 ? C2' ITT 201 A 1 HETATM 20 O O2' ITT . . . C 3 49.396 68.593 35.191 1 30.1 ? O2' ITT 201 A 1 HETATM 21 C C1' ITT . . . C 3 50.741 67.686 37.143 1 23.67 ? C1' ITT 201 A 1 HETATM 22 N N9 ITT . . . C 3 52.125 67.594 37.301 1 21.87 ? N9 ITT 201 A 1 HETATM 23 C C8 ITT . . . C 3 52.914 66.57 37.845 1 20.78 ? C8 ITT 201 A 1 HETATM 24 N N7 ITT . . . C 3 54.204 66.704 37.892 1 22.69 ? N7 ITT 201 A 1 HETATM 25 C C5 ITT . . . C 3 54.294 67.96 37.331 1 21.73 ? C5 ITT 201 A 1 HETATM 26 C C6 ITT . . . C 3 55.411 68.735 37.076 1 21.08 ? C6 ITT 201 A 1 HETATM 27 O O6 ITT . . . C 3 56.675 68.427 37.314 1 24.55 ? O6 ITT 201 A 1 HETATM 28 N N1 ITT . . . C 3 55.218 70.063 36.451 1 21.22 ? N1 ITT 201 A 1 HETATM 29 C C2 ITT . . . C 3 53.897 70.493 36.146 1 20.2 ? C2 ITT 201 A 1 HETATM 30 N N3 ITT . . . C 3 52.773 69.798 36.375 1 18.94 ? N3 ITT 201 A 1 HETATM 31 C C4 ITT . . . C 3 53.03 68.527 36.964 1 21.46 ? C4 ITT 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #