data_2DVV # _model_server_result.job_id UDBXTzTklMBhNpkbtc604Q _model_server_result.datetime_utc '2024-11-14 09:26:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2DVV # _exptl.entry_id 2DVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DVV _cell.length_a 71.782 _cell.length_b 52.604 _cell.length_c 32.059 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 2DVV _atom_sites.fract_transf_matrix[1][1] 0.013931 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 300 300 EPE EPE . C 3 HOH A 1 456 1 HOH HOH . C 3 HOH A 2 457 2 HOH HOH . C 3 HOH A 3 458 3 HOH HOH . C 3 HOH A 4 459 4 HOH HOH . C 3 HOH A 5 460 5 HOH HOH . C 3 HOH A 6 461 6 HOH HOH . C 3 HOH A 7 462 7 HOH HOH . C 3 HOH A 8 463 8 HOH HOH . C 3 HOH A 9 464 10 HOH HOH . C 3 HOH A 10 465 11 HOH HOH . C 3 HOH A 11 466 12 HOH HOH . C 3 HOH A 12 467 13 HOH HOH . C 3 HOH A 13 468 14 HOH HOH . C 3 HOH A 14 469 15 HOH HOH . C 3 HOH A 15 470 16 HOH HOH . C 3 HOH A 16 471 17 HOH HOH . C 3 HOH A 17 472 18 HOH HOH . C 3 HOH A 18 473 19 HOH HOH . C 3 HOH A 19 474 20 HOH HOH . C 3 HOH A 20 475 21 HOH HOH . C 3 HOH A 21 476 22 HOH HOH . C 3 HOH A 22 477 23 HOH HOH . C 3 HOH A 23 478 25 HOH HOH . C 3 HOH A 24 479 26 HOH HOH . C 3 HOH A 25 480 27 HOH HOH . C 3 HOH A 26 481 28 HOH HOH . C 3 HOH A 27 482 29 HOH HOH . C 3 HOH A 28 483 31 HOH HOH . C 3 HOH A 29 484 32 HOH HOH . C 3 HOH A 30 485 33 HOH HOH . C 3 HOH A 31 486 34 HOH HOH . C 3 HOH A 32 487 35 HOH HOH . C 3 HOH A 33 488 36 HOH HOH . C 3 HOH A 34 489 37 HOH HOH . C 3 HOH A 35 490 38 HOH HOH . C 3 HOH A 36 491 39 HOH HOH . C 3 HOH A 37 492 40 HOH HOH . C 3 HOH A 38 493 41 HOH HOH . C 3 HOH A 39 494 42 HOH HOH . C 3 HOH A 40 495 43 HOH HOH . C 3 HOH A 41 496 44 HOH HOH . C 3 HOH A 42 497 45 HOH HOH . C 3 HOH A 43 498 46 HOH HOH . C 3 HOH A 44 499 48 HOH HOH . C 3 HOH A 45 500 49 HOH HOH . C 3 HOH A 46 501 50 HOH HOH . C 3 HOH A 47 502 51 HOH HOH . C 3 HOH A 48 503 52 HOH HOH . C 3 HOH A 49 504 54 HOH HOH . C 3 HOH A 50 505 55 HOH HOH . C 3 HOH A 51 506 56 HOH HOH . C 3 HOH A 52 507 57 HOH HOH . C 3 HOH A 53 508 58 HOH HOH . C 3 HOH A 54 509 59 HOH HOH . C 3 HOH A 55 510 60 HOH HOH . C 3 HOH A 56 511 61 HOH HOH . C 3 HOH A 57 512 62 HOH HOH . C 3 HOH A 58 513 63 HOH HOH . C 3 HOH A 59 514 64 HOH HOH . C 3 HOH A 60 515 65 HOH HOH . C 3 HOH A 61 516 66 HOH HOH . C 3 HOH A 62 517 67 HOH HOH . C 3 HOH A 63 518 68 HOH HOH . C 3 HOH A 64 519 69 HOH HOH . C 3 HOH A 65 520 70 HOH HOH . C 3 HOH A 66 521 71 HOH HOH . C 3 HOH A 67 522 72 HOH HOH . C 3 HOH A 68 523 73 HOH HOH . C 3 HOH A 69 524 74 HOH HOH . C 3 HOH A 70 525 75 HOH HOH . C 3 HOH A 71 526 76 HOH HOH . C 3 HOH A 72 527 77 HOH HOH . C 3 HOH A 73 528 78 HOH HOH . C 3 HOH A 74 529 79 HOH HOH . C 3 HOH A 75 530 80 HOH HOH . C 3 HOH A 76 531 81 HOH HOH . C 3 HOH A 77 532 82 HOH HOH . C 3 HOH A 78 533 83 HOH HOH . C 3 HOH A 79 534 84 HOH HOH . C 3 HOH A 80 535 86 HOH HOH . C 3 HOH A 81 536 87 HOH HOH . C 3 HOH A 82 537 88 HOH HOH . C 3 HOH A 83 538 89 HOH HOH . C 3 HOH A 84 539 90 HOH HOH . C 3 HOH A 85 540 91 HOH HOH . C 3 HOH A 86 541 92 HOH HOH . C 3 HOH A 87 542 93 HOH HOH . C 3 HOH A 88 543 94 HOH HOH . C 3 HOH A 89 544 95 HOH HOH . C 3 HOH A 90 545 96 HOH HOH . C 3 HOH A 91 546 99 HOH HOH . C 3 HOH A 92 547 100 HOH HOH . C 3 HOH A 93 548 101 HOH HOH . C 3 HOH A 94 549 102 HOH HOH . C 3 HOH A 95 550 103 HOH HOH . C 3 HOH A 96 551 104 HOH HOH . C 3 HOH A 97 552 105 HOH HOH . C 3 HOH A 98 553 106 HOH HOH . C 3 HOH A 99 554 107 HOH HOH . C 3 HOH A 100 555 108 HOH HOH . C 3 HOH A 101 556 109 HOH HOH . C 3 HOH A 102 557 110 HOH HOH . C 3 HOH A 103 558 111 HOH HOH . C 3 HOH A 104 559 112 HOH HOH . C 3 HOH A 105 560 113 HOH HOH . C 3 HOH A 106 561 114 HOH HOH . C 3 HOH A 107 562 115 HOH HOH . C 3 HOH A 108 563 116 HOH HOH . C 3 HOH A 109 564 117 HOH HOH . C 3 HOH A 110 565 118 HOH HOH . C 3 HOH A 111 566 119 HOH HOH . C 3 HOH A 112 567 120 HOH HOH . C 3 HOH A 113 568 121 HOH HOH . C 3 HOH A 114 569 122 HOH HOH . C 3 HOH A 115 570 123 HOH HOH . C 3 HOH A 116 571 124 HOH HOH . C 3 HOH A 117 572 125 HOH HOH . C 3 HOH A 118 573 126 HOH HOH . C 3 HOH A 119 574 130 HOH HOH . C 3 HOH A 120 575 131 HOH HOH . C 3 HOH A 121 576 132 HOH HOH . C 3 HOH A 122 577 133 HOH HOH . C 3 HOH A 123 578 134 HOH HOH . C 3 HOH A 124 579 135 HOH HOH . C 3 HOH A 125 580 136 HOH HOH . C 3 HOH A 126 581 138 HOH HOH . C 3 HOH A 127 582 139 HOH HOH . C 3 HOH A 128 583 140 HOH HOH . C 3 HOH A 129 584 141 HOH HOH . C 3 HOH A 130 585 142 HOH HOH . C 3 HOH A 131 586 143 HOH HOH . C 3 HOH A 132 587 144 HOH HOH . C 3 HOH A 133 588 145 HOH HOH . C 3 HOH A 134 589 146 HOH HOH . C 3 HOH A 135 590 148 HOH HOH . C 3 HOH A 136 591 149 HOH HOH . C 3 HOH A 137 592 150 HOH HOH . C 3 HOH A 138 593 151 HOH HOH . C 3 HOH A 139 594 152 HOH HOH . C 3 HOH A 140 595 153 HOH HOH . C 3 HOH A 141 596 154 HOH HOH . C 3 HOH A 142 597 155 HOH HOH . C 3 HOH A 143 598 156 HOH HOH . C 3 HOH A 144 599 157 HOH HOH . C 3 HOH A 145 600 158 HOH HOH . C 3 HOH A 146 601 159 HOH HOH . C 3 HOH A 147 602 160 HOH HOH . C 3 HOH A 148 603 161 HOH HOH . C 3 HOH A 149 604 162 HOH HOH . C 3 HOH A 150 605 163 HOH HOH . C 3 HOH A 151 606 164 HOH HOH . C 3 HOH A 152 607 165 HOH HOH . C 3 HOH A 153 608 166 HOH HOH . C 3 HOH A 154 609 167 HOH HOH . C 3 HOH A 155 610 168 HOH HOH . C 3 HOH A 156 611 169 HOH HOH . C 3 HOH A 157 612 170 HOH HOH . C 3 HOH A 158 613 171 HOH HOH . C 3 HOH A 159 614 172 HOH HOH . C 3 HOH A 160 615 173 HOH HOH . C 3 HOH A 161 616 174 HOH HOH . C 3 HOH A 162 617 175 HOH HOH . C 3 HOH A 163 618 176 HOH HOH . C 3 HOH A 164 619 177 HOH HOH . C 3 HOH A 165 620 178 HOH HOH . C 3 HOH A 166 621 179 HOH HOH . C 3 HOH A 167 622 180 HOH HOH . C 3 HOH A 168 623 181 HOH HOH . C 3 HOH A 169 624 182 HOH HOH . C 3 HOH A 170 625 183 HOH HOH . C 3 HOH A 171 626 184 HOH HOH . C 3 HOH A 172 627 185 HOH HOH . C 3 HOH A 173 628 186 HOH HOH . C 3 HOH A 174 629 187 HOH HOH . C 3 HOH A 175 630 188 HOH HOH . C 3 HOH A 176 631 189 HOH HOH . C 3 HOH A 177 632 190 HOH HOH . C 3 HOH A 178 633 191 HOH HOH . C 3 HOH A 179 634 192 HOH HOH . C 3 HOH A 180 635 193 HOH HOH . C 3 HOH A 181 636 194 HOH HOH . C 3 HOH A 182 637 195 HOH HOH . C 3 HOH A 183 638 196 HOH HOH . C 3 HOH A 184 639 197 HOH HOH . C 3 HOH A 185 640 198 HOH HOH . C 3 HOH A 186 641 199 HOH HOH . C 3 HOH A 187 642 200 HOH HOH . C 3 HOH A 188 643 201 HOH HOH . C 3 HOH A 189 644 202 HOH HOH . C 3 HOH A 190 645 203 HOH HOH . C 3 HOH A 191 646 204 HOH HOH . C 3 HOH A 192 647 205 HOH HOH . C 3 HOH A 193 648 206 HOH HOH . C 3 HOH A 194 649 207 HOH HOH . C 3 HOH A 195 650 208 HOH HOH . C 3 HOH A 196 651 209 HOH HOH . C 3 HOH A 197 652 210 HOH HOH . C 3 HOH A 198 653 211 HOH HOH . C 3 HOH A 199 654 212 HOH HOH . C 3 HOH A 200 655 213 HOH HOH . C 3 HOH A 201 656 214 HOH HOH . C 3 HOH A 202 657 215 HOH HOH . C 3 HOH A 203 658 216 HOH HOH . C 3 HOH A 204 659 217 HOH HOH . C 3 HOH A 205 660 218 HOH HOH . C 3 HOH A 206 661 219 HOH HOH . C 3 HOH A 207 662 220 HOH HOH . C 3 HOH A 208 663 221 HOH HOH . C 3 HOH A 209 664 222 HOH HOH . C 3 HOH A 210 665 223 HOH HOH . C 3 HOH A 211 666 224 HOH HOH . C 3 HOH A 212 667 225 HOH HOH . C 3 HOH A 213 668 226 HOH HOH . C 3 HOH A 214 669 227 HOH HOH . C 3 HOH A 215 670 228 HOH HOH . C 3 HOH A 216 671 229 HOH HOH . C 3 HOH A 217 672 230 HOH HOH . C 3 HOH A 218 673 231 HOH HOH . C 3 HOH A 219 674 232 HOH HOH . C 3 HOH A 220 675 233 HOH HOH . C 3 HOH A 221 676 234 HOH HOH . C 3 HOH A 222 677 235 HOH HOH . C 3 HOH A 223 678 236 HOH HOH . C 3 HOH A 224 679 237 HOH HOH . C 3 HOH A 225 680 238 HOH HOH . C 3 HOH A 226 681 239 HOH HOH . C 3 HOH A 227 682 240 HOH HOH . C 3 HOH A 228 683 241 HOH HOH . C 3 HOH A 229 684 242 HOH HOH . C 3 HOH A 230 685 243 HOH HOH . C 3 HOH A 231 686 244 HOH HOH . C 3 HOH A 232 687 245 HOH HOH . C 3 HOH A 233 688 246 HOH HOH . C 3 HOH A 234 689 247 HOH HOH . C 3 HOH A 235 690 248 HOH HOH . C 3 HOH A 236 691 249 HOH HOH . C 3 HOH A 237 692 250 HOH HOH . C 3 HOH A 238 693 251 HOH HOH . C 3 HOH A 239 694 252 HOH HOH . C 3 HOH A 240 695 253 HOH HOH . C 3 HOH A 241 696 254 HOH HOH . C 3 HOH A 242 697 255 HOH HOH . C 3 HOH A 243 698 256 HOH HOH . C 3 HOH A 244 699 257 HOH HOH . C 3 HOH A 245 700 258 HOH HOH . C 3 HOH A 246 701 259 HOH HOH . C 3 HOH A 247 702 260 HOH HOH . C 3 HOH A 248 703 261 HOH HOH . C 3 HOH A 249 704 262 HOH HOH . C 3 HOH A 250 705 263 HOH HOH . C 3 HOH A 251 706 264 HOH HOH . C 3 HOH A 252 707 265 HOH HOH . C 3 HOH A 253 708 266 HOH HOH . C 3 HOH A 254 709 267 HOH HOH . C 3 HOH A 255 710 268 HOH HOH . C 3 HOH A 256 711 269 HOH HOH . C 3 HOH A 257 712 270 HOH HOH . C 3 HOH A 258 713 271 HOH HOH . C 3 HOH A 259 714 272 HOH HOH . C 3 HOH A 260 715 273 HOH HOH . C 3 HOH A 261 716 274 HOH HOH . C 3 HOH A 262 717 275 HOH HOH . C 3 HOH A 263 718 276 HOH HOH . C 3 HOH A 264 719 277 HOH HOH . C 3 HOH A 265 720 278 HOH HOH . C 3 HOH A 266 721 279 HOH HOH . C 3 HOH A 267 722 280 HOH HOH . C 3 HOH A 268 723 281 HOH HOH . C 3 HOH A 269 724 282 HOH HOH . C 3 HOH A 270 725 283 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 39.946 17.203 6.516 1 51.26 ? N1 EPE 300 A 1 HETATM 2 C C2 EPE . . . B 2 41.367 17.031 7.023 1 50.6 ? C2 EPE 300 A 1 HETATM 3 C C3 EPE . . . B 2 42.057 16.026 6.106 1 49.88 ? C3 EPE 300 A 1 HETATM 4 N N4 EPE . . . B 2 41.393 14.699 6.198 1 49.63 ? N4 EPE 300 A 1 HETATM 5 C C5 EPE . . . B 2 39.959 14.815 5.765 1 49.53 ? C5 EPE 300 A 1 HETATM 6 C C6 EPE . . . B 2 39.215 15.868 6.613 1 50.49 ? C6 EPE 300 A 1 HETATM 7 C C7 EPE . . . B 2 42.011 13.654 5.318 1 48.68 ? C7 EPE 300 A 1 HETATM 8 C C8 EPE . . . B 2 41.821 13.887 3.824 1 48.87 ? C8 EPE 300 A 1 HETATM 9 O O8 EPE . . . B 2 42.566 13.008 2.979 1 47.75 ? O8 EPE 300 A 1 HETATM 10 C C9 EPE . . . B 2 39.186 18.189 7.356 1 51.92 ? C9 EPE 300 A 1 HETATM 11 C C10 EPE . . . B 2 39.323 19.602 6.724 1 54.63 ? C10 EPE 300 A 1 HETATM 12 S S EPE . . . B 2 38.433 20.812 7.717 1 57.05 ? S EPE 300 A 1 HETATM 13 O O1S EPE . . . B 2 38.616 22.082 7.052 1 56.77 ? O1S EPE 300 A 1 HETATM 14 O O2S EPE . . . B 2 39.05 20.789 9.052 1 56.99 ? O2S EPE 300 A 1 HETATM 15 O O3S EPE . . . B 2 37.055 20.386 7.718 1 56.66 ? O3S EPE 300 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #