data_2DWB # _model_server_result.job_id ujApucQUBR75LB2PzU4XHw _model_server_result.datetime_utc '2024-10-10 07:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 2DWB # _exptl.entry_id 2DWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DWB _cell.length_a 81.473 _cell.length_b 81.473 _cell.length_c 174.183 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 181 A GLU 299 1_555 A N MSE 182 A MSE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 182 A MSE 300 1_555 A N ILE 183 A ILE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ARG 186 A ARG 304 1_555 A N MSE 187 A MSE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 187 A MSE 305 1_555 A N HIS 188 A HIS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C PRO 254 A PRO 372 1_555 A N MSE 255 A MSE 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 255 A MSE 373 1_555 A N LEU 256 A LEU 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2DWB _atom_sites.fract_transf_matrix[1][1] 0.012274 _atom_sites.fract_transf_matrix[1][2] 0.007086 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 3 ANP A 1 502 502 ANP ANP . D 4 HOH A 1 1 1 HOH TIP . D 4 HOH A 2 2 2 HOH TIP . D 4 HOH A 3 3 3 HOH TIP . D 4 HOH A 4 4 4 HOH TIP . D 4 HOH A 5 5 5 HOH TIP . D 4 HOH A 6 6 6 HOH TIP . D 4 HOH A 7 7 7 HOH TIP . D 4 HOH A 8 8 8 HOH TIP . D 4 HOH A 9 9 9 HOH TIP . D 4 HOH A 10 10 10 HOH TIP . D 4 HOH A 11 11 11 HOH TIP . D 4 HOH A 12 12 12 HOH TIP . D 4 HOH A 13 13 13 HOH TIP . D 4 HOH A 14 14 14 HOH TIP . D 4 HOH A 15 15 15 HOH TIP . D 4 HOH A 16 16 16 HOH TIP . D 4 HOH A 17 17 17 HOH TIP . D 4 HOH A 18 18 18 HOH TIP . D 4 HOH A 19 19 19 HOH TIP . D 4 HOH A 20 20 20 HOH TIP . D 4 HOH A 21 21 21 HOH TIP . D 4 HOH A 22 22 22 HOH TIP . D 4 HOH A 23 23 23 HOH TIP . D 4 HOH A 24 24 24 HOH TIP . D 4 HOH A 25 25 25 HOH TIP . D 4 HOH A 26 26 26 HOH TIP . D 4 HOH A 27 27 27 HOH TIP . D 4 HOH A 28 28 28 HOH TIP . D 4 HOH A 29 29 29 HOH TIP . D 4 HOH A 30 30 30 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 12.19 69.631 62.069 1 83.86 ? PG ANP 502 A 1 HETATM 2 O O1G ANP . . . C 3 12.185 70.906 62.819 1 82.98 ? O1G ANP 502 A 1 HETATM 3 O O2G ANP . . . C 3 11.795 69.96 60.537 1 78.86 ? O2G ANP 502 A 1 HETATM 4 O O3G ANP . . . C 3 11.094 68.642 62.671 1 75.54 ? O3G ANP 502 A 1 HETATM 5 P PB ANP . . . C 3 14.543 68.553 63.545 1 52.06 ? PB ANP 502 A 1 HETATM 6 O O1B ANP . . . C 3 15.995 68.853 63.466 1 72.02 ? O1B ANP 502 A 1 HETATM 7 O O2B ANP . . . C 3 13.928 69.406 64.755 1 57.3 ? O2B ANP 502 A 1 HETATM 8 N N3B ANP . . . C 3 13.79 69.001 62.054 1 66.52 ? N3B ANP 502 A 1 HETATM 9 P PA ANP . . . C 3 13.077 66.235 64.329 1 47.48 ? PA ANP 502 A 1 HETATM 10 O O1A ANP . . . C 3 12.897 66.199 65.811 1 41.86 ? O1A ANP 502 A 1 HETATM 11 O O2A ANP . . . C 3 11.823 66.924 63.662 1 41.49 ? O2A ANP 502 A 1 HETATM 12 O O3A ANP . . . C 3 14.471 66.985 63.993 1 63.32 ? O3A ANP 502 A 1 HETATM 13 O O5' ANP . . . C 3 13.27 64.753 63.789 1 46.88 ? O5' ANP 502 A 1 HETATM 14 C C5' ANP . . . C 3 13.31 64.847 62.37 1 49.13 ? C5' ANP 502 A 1 HETATM 15 C C4' ANP . . . C 3 12.799 63.511 61.82 1 59.59 ? C4' ANP 502 A 1 HETATM 16 O O4' ANP . . . C 3 13.41 62.366 62.487 1 57.72 ? O4' ANP 502 A 1 HETATM 17 C C3' ANP . . . C 3 11.243 63.423 61.966 1 53.82 ? C3' ANP 502 A 1 HETATM 18 O O3' ANP . . . C 3 10.787 63.842 60.686 1 64.87 ? O3' ANP 502 A 1 HETATM 19 C C2' ANP . . . C 3 11.047 61.927 62.21 1 51.29 ? C2' ANP 502 A 1 HETATM 20 O O2' ANP . . . C 3 10.57 61.216 61.077 1 59.12 ? O2' ANP 502 A 1 HETATM 21 C C1' ANP . . . C 3 12.372 61.401 62.827 1 50.49 ? C1' ANP 502 A 1 HETATM 22 N N9 ANP . . . C 3 12.299 61.259 64.306 1 44.23 ? N9 ANP 502 A 1 HETATM 23 C C8 ANP . . . C 3 12.614 62.22 65.241 1 33.01 ? C8 ANP 502 A 1 HETATM 24 N N7 ANP . . . C 3 12.447 61.755 66.442 1 42.75 ? N7 ANP 502 A 1 HETATM 25 C C5 ANP . . . C 3 12.018 60.474 66.378 1 36.41 ? C5 ANP 502 A 1 HETATM 26 C C6 ANP . . . C 3 11.68 59.478 67.33 1 37.63 ? C6 ANP 502 A 1 HETATM 27 N N6 ANP . . . C 3 11.757 59.742 68.682 1 41.28 ? N6 ANP 502 A 1 HETATM 28 N N1 ANP . . . C 3 11.276 58.262 66.891 1 39.6 ? N1 ANP 502 A 1 HETATM 29 C C2 ANP . . . C 3 11.192 57.985 65.594 1 35.77 ? C2 ANP 502 A 1 HETATM 30 N N3 ANP . . . C 3 11.502 58.892 64.668 1 43.58 ? N3 ANP 502 A 1 HETATM 31 C C4 ANP . . . C 3 11.913 60.132 65.006 1 38.78 ? C4 ANP 502 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #