data_2DWE
#
_model_server_result.job_id            fNLXXFXKo6HyN89N0swJSw 
_model_server_result.datetime_utc      '2024-11-23 23:02:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dwe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":202}' 
#
_entry.id    2DWE 
#
_exptl.entry_id    2DWE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.254 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NONAN-1-OL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2DWE 
_cell.length_a            154.56 
_cell.length_b            154.56 
_cell.length_c            75.813 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DWE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 309.12 309.12 0 
3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 309.12 0 0 
4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 309.12 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 C OG1 THR 54 C THR 75 1_555 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? 
metalc ? metalc2 C O THR 54 C THR 75 1_555 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.233 ? 
metalc ? metalc3 C OG1 THR 54 C THR 75 4_575 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? 
metalc ? metalc4 C O THR 54 C THR 75 4_575 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.225 ? 
metalc ? metalc5 C OG1 THR 54 C THR 75 3_755 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? 
metalc ? metalc6 C O THR 54 C THR 75 3_755 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.22 ? 
metalc ? metalc7 C OG1 THR 54 C THR 75 2_775 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? 
metalc ? metalc8 C O THR 54 C THR 75 2_775 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.212 ? 
metalc ? metalc9 C O THR 54 C THR 75 1_555 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? 
metalc ? metalc10 C O THR 54 C THR 75 4_575 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? 
metalc ? metalc11 C O THR 54 C THR 75 3_755 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? 
metalc ? metalc12 C O THR 54 C THR 75 2_775 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? 
metalc ? metalc13 C O VAL 55 C VAL 76 1_555 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? 
metalc ? metalc14 C O VAL 55 C VAL 76 4_575 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? 
metalc ? metalc15 C O VAL 55 C VAL 76 3_755 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? 
metalc ? metalc16 C O VAL 55 C VAL 76 2_775 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? 
metalc ? metalc17 C O GLY 56 C GLY 77 1_555 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.268 ? 
metalc ? metalc18 C O GLY 56 C GLY 77 4_575 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.259 ? 
metalc ? metalc19 C O GLY 56 C GLY 77 3_755 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.254 ? 
metalc ? metalc20 C O GLY 56 C GLY 77 2_775 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.245 ? 
metalc ? metalc21 C O TYR 57 C TYR 78 1_555 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? 
metalc ? metalc22 C O TYR 57 C TYR 78 4_575 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc23 C O TYR 57 C TYR 78 3_755 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? 
metalc ? metalc24 C O TYR 57 C TYR 78 2_775 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? 
#
_chem_comp.formula           'C9 H20 O' 
_chem_comp.formula_weight    144.254 
_chem_comp.id                F09 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NONAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 F09 sing 83 n n 
C1 H11 F09 sing 84 n n 
C1 H12 F09 sing 85 n n 
C1 H13 F09 sing 86 n n 
C2 C3 F09 sing 87 n n 
C2 H21 F09 sing 88 n n 
C2 H22 F09 sing 89 n n 
C3 C4 F09 sing 90 n n 
C3 H31 F09 sing 91 n n 
C3 H32 F09 sing 92 n n 
C4 C5 F09 sing 93 n n 
C4 H41 F09 sing 94 n n 
C4 H42 F09 sing 95 n n 
C5 C6 F09 sing 96 n n 
C5 H51 F09 sing 97 n n 
C5 H52 F09 sing 98 n n 
C6 C7 F09 sing 99 n n 
C6 H61 F09 sing 100 n n 
C6 H62 F09 sing 101 n n 
C7 C8 F09 sing 102 n n 
C7 H71 F09 sing 103 n n 
C7 H72 F09 sing 104 n n 
C8 C9 F09 sing 105 n n 
C8 H81 F09 sing 106 n n 
C8 H82 F09 sing 107 n n 
C9 OXT F09 sing 108 n n 
C9 H91 F09 sing 109 n n 
C9 H92 F09 sing 110 n n 
OXT HXT F09 sing 111 n n 
#
_atom_sites.entry_id                     2DWE 
_atom_sites.fract_transf_matrix[1][1]    0.00647 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00647 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01319 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 RB C 1 3001 3001 RB RB . 
E 4 RB C 1 3002 3002 RB RB . 
F 4 RB C 1 3003 3003 RB RB . 
G 5 L2C C 1 201 201 L2C L2C . 
H 6 F09 C 1 202 202 F09 F09 . 
I 7 TBA C 1 4001 4001 TBA TBA . 
J 8 HOH A 1 220 1 HOH HOH . 
J 8 HOH A 2 221 2 HOH HOH . 
J 8 HOH A 3 222 13 HOH HOH . 
J 8 HOH A 4 223 31 HOH HOH . 
J 8 HOH A 5 224 32 HOH HOH . 
J 8 HOH A 6 225 33 HOH HOH . 
J 8 HOH A 7 226 34 HOH HOH . 
J 8 HOH A 8 227 36 HOH HOH . 
J 8 HOH A 9 228 39 HOH HOH . 
J 8 HOH A 10 229 41 HOH HOH . 
J 8 HOH A 11 230 42 HOH HOH . 
J 8 HOH A 12 231 47 HOH HOH . 
J 8 HOH A 13 232 48 HOH HOH . 
J 8 HOH A 14 233 52 HOH HOH . 
J 8 HOH A 15 234 55 HOH HOH . 
J 8 HOH A 16 235 56 HOH HOH . 
J 8 HOH A 17 236 61 HOH HOH . 
J 8 HOH A 18 237 63 HOH HOH . 
J 8 HOH A 19 238 71 HOH HOH . 
J 8 HOH A 20 239 73 HOH HOH . 
J 8 HOH A 21 240 74 HOH HOH . 
J 8 HOH A 22 241 76 HOH HOH . 
J 8 HOH A 23 242 77 HOH HOH . 
J 8 HOH A 24 243 78 HOH HOH . 
J 8 HOH A 25 244 80 HOH HOH . 
J 8 HOH A 26 245 83 HOH HOH . 
J 8 HOH A 27 246 85 HOH HOH . 
J 8 HOH A 28 247 91 HOH HOH . 
J 8 HOH A 29 248 93 HOH HOH . 
J 8 HOH A 30 249 94 HOH HOH . 
J 8 HOH A 31 250 95 HOH HOH . 
J 8 HOH A 32 251 96 HOH HOH . 
J 8 HOH A 33 252 97 HOH HOH . 
K 8 HOH B 1 213 4 HOH HOH . 
K 8 HOH B 2 214 5 HOH HOH . 
K 8 HOH B 3 215 6 HOH HOH . 
K 8 HOH B 4 216 8 HOH HOH . 
K 8 HOH B 5 217 9 HOH HOH . 
K 8 HOH B 6 218 10 HOH HOH . 
K 8 HOH B 7 219 11 HOH HOH . 
K 8 HOH B 8 220 12 HOH HOH . 
K 8 HOH B 9 221 14 HOH HOH . 
K 8 HOH B 10 222 15 HOH HOH . 
K 8 HOH B 11 223 16 HOH HOH . 
K 8 HOH B 12 224 17 HOH HOH . 
K 8 HOH B 13 225 19 HOH HOH . 
K 8 HOH B 14 226 20 HOH HOH . 
K 8 HOH B 15 227 22 HOH HOH . 
K 8 HOH B 16 228 23 HOH HOH . 
K 8 HOH B 17 229 24 HOH HOH . 
K 8 HOH B 18 230 25 HOH HOH . 
K 8 HOH B 19 231 26 HOH HOH . 
K 8 HOH B 20 232 28 HOH HOH . 
K 8 HOH B 21 233 29 HOH HOH . 
K 8 HOH B 22 234 37 HOH HOH . 
K 8 HOH B 23 235 38 HOH HOH . 
K 8 HOH B 24 236 40 HOH HOH . 
K 8 HOH B 25 237 43 HOH HOH . 
K 8 HOH B 26 238 45 HOH HOH . 
K 8 HOH B 27 239 46 HOH HOH . 
K 8 HOH B 28 240 49 HOH HOH . 
K 8 HOH B 29 241 50 HOH HOH . 
K 8 HOH B 30 242 51 HOH HOH . 
K 8 HOH B 31 243 53 HOH HOH . 
K 8 HOH B 32 244 54 HOH HOH . 
K 8 HOH B 33 245 58 HOH HOH . 
K 8 HOH B 34 246 59 HOH HOH . 
K 8 HOH B 35 247 62 HOH HOH . 
K 8 HOH B 36 248 64 HOH HOH . 
K 8 HOH B 37 249 65 HOH HOH . 
K 8 HOH B 38 250 66 HOH HOH . 
K 8 HOH B 39 251 67 HOH HOH . 
K 8 HOH B 40 252 68 HOH HOH . 
K 8 HOH B 41 253 69 HOH HOH . 
K 8 HOH B 42 254 72 HOH HOH . 
K 8 HOH B 43 255 75 HOH HOH . 
K 8 HOH B 44 256 81 HOH HOH . 
K 8 HOH B 45 257 82 HOH HOH . 
K 8 HOH B 46 258 84 HOH HOH . 
K 8 HOH B 47 259 86 HOH HOH . 
K 8 HOH B 48 260 88 HOH HOH . 
K 8 HOH B 49 261 89 HOH HOH . 
K 8 HOH B 50 262 92 HOH HOH . 
L 8 HOH C 1 4002 3 HOH HOH . 
L 8 HOH C 2 4003 7 HOH HOH . 
L 8 HOH C 3 4004 18 HOH HOH . 
L 8 HOH C 4 4005 21 HOH HOH . 
L 8 HOH C 5 4006 27 HOH HOH . 
L 8 HOH C 6 4007 30 HOH HOH . 
L 8 HOH C 7 4008 35 HOH HOH . 
L 8 HOH C 8 4009 44 HOH HOH . 
L 8 HOH C 9 4010 57 HOH HOH . 
L 8 HOH C 10 4011 60 HOH HOH . 
L 8 HOH C 11 4012 70 HOH HOH . 
L 8 HOH C 12 4013 79 HOH HOH . 
L 8 HOH C 13 4014 87 HOH HOH . 
L 8 HOH C 14 4015 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 F09 . . . H 6 156.492 132.054 -40.507 1 97.82 ? C1 F09 202 C 1 
HETATM 2 C C2 F09 . . . H 6 156.485 131.001 -39.405 1 98.22 ? C2 F09 202 C 1 
HETATM 3 C C3 F09 . . . H 6 155.272 131.163 -38.493 1 97.53 ? C3 F09 202 C 1 
HETATM 4 C C4 F09 . . . H 6 155.557 132.084 -37.306 1 97.03 ? C4 F09 202 C 1 
HETATM 5 C C5 F09 . . . H 6 156.167 131.337 -36.105 1 97.13 ? C5 F09 202 C 1 
HETATM 6 C C6 F09 . . . H 6 155.124 130.518 -35.345 1 96.05 ? C6 F09 202 C 1 
HETATM 7 C C7 F09 . . . H 6 155.676 129.839 -34.115 1 96.62 ? C7 F09 202 C 1 
HETATM 8 C C8 F09 . . . H 6 154.624 128.975 -33.471 1 96.05 ? C8 F09 202 C 1 
HETATM 9 C C9 F09 . . . H 6 155.16 128.19 -32.225 1 96.23 ? C9 F09 202 C 1 
HETATM 10 O OXT F09 . . . H 6 155.432 128.72 -31.173 1 95.8 ? OXT F09 202 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           10 
#