data_2DWE # _model_server_result.job_id r8QiMgjoK1HJvT6syRyFGQ _model_server_result.datetime_utc '2024-11-23 23:05:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3001}' # _entry.id 2DWE # _exptl.entry_id 2DWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 85.468 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUBIDIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DWE _cell.length_a 154.56 _cell.length_b 154.56 _cell.length_c 75.813 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 309.12 309.12 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 309.12 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 309.12 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 C OG1 THR 54 C THR 75 1_555 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc2 C O THR 54 C THR 75 1_555 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.233 ? metalc ? metalc3 C OG1 THR 54 C THR 75 4_575 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc4 C O THR 54 C THR 75 4_575 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.225 ? metalc ? metalc5 C OG1 THR 54 C THR 75 3_755 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc6 C O THR 54 C THR 75 3_755 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.22 ? metalc ? metalc7 C OG1 THR 54 C THR 75 2_775 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc8 C O THR 54 C THR 75 2_775 E RB RB . C RB 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.212 ? metalc ? metalc9 C O THR 54 C THR 75 1_555 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc10 C O THR 54 C THR 75 4_575 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc11 C O THR 54 C THR 75 3_755 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc12 C O THR 54 C THR 75 2_775 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? metalc ? metalc13 C O VAL 55 C VAL 76 1_555 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? metalc ? metalc14 C O VAL 55 C VAL 76 4_575 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? metalc ? metalc15 C O VAL 55 C VAL 76 3_755 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc16 C O VAL 55 C VAL 76 2_775 F RB RB . C RB 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? metalc ? metalc17 C O GLY 56 C GLY 77 1_555 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.268 ? metalc ? metalc18 C O GLY 56 C GLY 77 4_575 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.259 ? metalc ? metalc19 C O GLY 56 C GLY 77 3_755 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.254 ? metalc ? metalc20 C O GLY 56 C GLY 77 2_775 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.245 ? metalc ? metalc21 C O TYR 57 C TYR 78 1_555 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc22 C O TYR 57 C TYR 78 4_575 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc23 C O TYR 57 C TYR 78 3_755 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc24 C O TYR 57 C TYR 78 2_775 D RB RB . C RB 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? # _chem_comp.formula 'Rb 1' _chem_comp.formula_weight 85.468 _chem_comp.id RB _chem_comp.mon_nstd_flag . _chem_comp.name 'RUBIDIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DWE _atom_sites.fract_transf_matrix[1][1] 0.00647 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 RB C 1 3001 3001 RB RB . E 4 RB C 1 3002 3002 RB RB . F 4 RB C 1 3003 3003 RB RB . G 5 L2C C 1 201 201 L2C L2C . H 6 F09 C 1 202 202 F09 F09 . I 7 TBA C 1 4001 4001 TBA TBA . J 8 HOH A 1 220 1 HOH HOH . J 8 HOH A 2 221 2 HOH HOH . J 8 HOH A 3 222 13 HOH HOH . J 8 HOH A 4 223 31 HOH HOH . J 8 HOH A 5 224 32 HOH HOH . J 8 HOH A 6 225 33 HOH HOH . J 8 HOH A 7 226 34 HOH HOH . J 8 HOH A 8 227 36 HOH HOH . J 8 HOH A 9 228 39 HOH HOH . J 8 HOH A 10 229 41 HOH HOH . J 8 HOH A 11 230 42 HOH HOH . J 8 HOH A 12 231 47 HOH HOH . J 8 HOH A 13 232 48 HOH HOH . J 8 HOH A 14 233 52 HOH HOH . J 8 HOH A 15 234 55 HOH HOH . J 8 HOH A 16 235 56 HOH HOH . J 8 HOH A 17 236 61 HOH HOH . J 8 HOH A 18 237 63 HOH HOH . J 8 HOH A 19 238 71 HOH HOH . J 8 HOH A 20 239 73 HOH HOH . J 8 HOH A 21 240 74 HOH HOH . J 8 HOH A 22 241 76 HOH HOH . J 8 HOH A 23 242 77 HOH HOH . J 8 HOH A 24 243 78 HOH HOH . J 8 HOH A 25 244 80 HOH HOH . J 8 HOH A 26 245 83 HOH HOH . J 8 HOH A 27 246 85 HOH HOH . J 8 HOH A 28 247 91 HOH HOH . J 8 HOH A 29 248 93 HOH HOH . J 8 HOH A 30 249 94 HOH HOH . J 8 HOH A 31 250 95 HOH HOH . J 8 HOH A 32 251 96 HOH HOH . J 8 HOH A 33 252 97 HOH HOH . K 8 HOH B 1 213 4 HOH HOH . K 8 HOH B 2 214 5 HOH HOH . K 8 HOH B 3 215 6 HOH HOH . K 8 HOH B 4 216 8 HOH HOH . K 8 HOH B 5 217 9 HOH HOH . K 8 HOH B 6 218 10 HOH HOH . K 8 HOH B 7 219 11 HOH HOH . K 8 HOH B 8 220 12 HOH HOH . K 8 HOH B 9 221 14 HOH HOH . K 8 HOH B 10 222 15 HOH HOH . K 8 HOH B 11 223 16 HOH HOH . K 8 HOH B 12 224 17 HOH HOH . K 8 HOH B 13 225 19 HOH HOH . K 8 HOH B 14 226 20 HOH HOH . K 8 HOH B 15 227 22 HOH HOH . K 8 HOH B 16 228 23 HOH HOH . K 8 HOH B 17 229 24 HOH HOH . K 8 HOH B 18 230 25 HOH HOH . K 8 HOH B 19 231 26 HOH HOH . K 8 HOH B 20 232 28 HOH HOH . K 8 HOH B 21 233 29 HOH HOH . K 8 HOH B 22 234 37 HOH HOH . K 8 HOH B 23 235 38 HOH HOH . K 8 HOH B 24 236 40 HOH HOH . K 8 HOH B 25 237 43 HOH HOH . K 8 HOH B 26 238 45 HOH HOH . K 8 HOH B 27 239 46 HOH HOH . K 8 HOH B 28 240 49 HOH HOH . K 8 HOH B 29 241 50 HOH HOH . K 8 HOH B 30 242 51 HOH HOH . K 8 HOH B 31 243 53 HOH HOH . K 8 HOH B 32 244 54 HOH HOH . K 8 HOH B 33 245 58 HOH HOH . K 8 HOH B 34 246 59 HOH HOH . K 8 HOH B 35 247 62 HOH HOH . K 8 HOH B 36 248 64 HOH HOH . K 8 HOH B 37 249 65 HOH HOH . K 8 HOH B 38 250 66 HOH HOH . K 8 HOH B 39 251 67 HOH HOH . K 8 HOH B 40 252 68 HOH HOH . K 8 HOH B 41 253 69 HOH HOH . K 8 HOH B 42 254 72 HOH HOH . K 8 HOH B 43 255 75 HOH HOH . K 8 HOH B 44 256 81 HOH HOH . K 8 HOH B 45 257 82 HOH HOH . K 8 HOH B 46 258 84 HOH HOH . K 8 HOH B 47 259 86 HOH HOH . K 8 HOH B 48 260 88 HOH HOH . K 8 HOH B 49 261 89 HOH HOH . K 8 HOH B 50 262 92 HOH HOH . L 8 HOH C 1 4002 3 HOH HOH . L 8 HOH C 2 4003 7 HOH HOH . L 8 HOH C 3 4004 18 HOH HOH . L 8 HOH C 4 4005 21 HOH HOH . L 8 HOH C 5 4006 27 HOH HOH . L 8 HOH C 6 4007 30 HOH HOH . L 8 HOH C 7 4008 35 HOH HOH . L 8 HOH C 8 4009 44 HOH HOH . L 8 HOH C 9 4010 57 HOH HOH . L 8 HOH C 10 4011 60 HOH HOH . L 8 HOH C 11 4012 70 HOH HOH . L 8 HOH C 12 4013 79 HOH HOH . L 8 HOH C 13 4014 87 HOH HOH . L 8 HOH C 14 4015 90 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol RB _atom_site.label_atom_id RB _atom_site.label_comp_id RB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 154.57 _atom_site.Cartn_y 154.57 _atom_site.Cartn_z -30.791 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 30.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id RB _atom_site.auth_comp_id RB _atom_site.auth_seq_id 3001 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #