data_2DWH # _model_server_result.job_id xMs-Y5tiAC5jtRs4kOiytg _model_server_result.datetime_utc '2024-11-28 14:14:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dwh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":4}' # _entry.id 2DWH # _exptl.entry_id 2DWH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.73 _cell.angle_gamma 90 _cell.entry_id 2DWH _cell.length_a 63.584 _cell.length_b 50.488 _cell.length_c 66.03 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DWH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 4 4 3 BMA BMA C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG N 1 NAG 2 n B NAG 2 B 2 NAG N 2 NAG 3 n C NAG 1 C 1 NAG M 1 NAG 3 n C NAG 2 C 2 NAG M 2 NAG 3 n C BMA 3 C 3 BMA M 3 MAN 4 n D NAG 1 D 1 NAG L 1 NAG 4 n D NAG 2 D 2 NAG L 2 NAG 4 n D BMA 3 D 3 BMA L 3 MAN 4 n D BMA 4 D 4 BMA L 4 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 348 1_555 A SG CYS 39 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 17 A CYS 358 1_555 A SG CYS 30 A CYS 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 64 A CYS 405 1_555 A SG CYS 343 A CYS 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 84 A CYS 425 1_555 A SG CYS 306 A CYS 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 116 A CYS 457 1_555 A SG CYS 191 A CYS 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 140 A CYS 481 1_555 A SG CYS 334 A CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf7 A SG CYS 150 A CYS 491 1_555 A SG CYS 164 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 A SG CYS 161 A CYS 502 1_555 A SG CYS 174 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 A SG CYS 232 A CYS 573 1_555 A SG CYS 246 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 A SG CYS 284 A CYS 625 1_555 A SG CYS 289 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 27 A ASN 368 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 135 A ASN 476 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 A ND2 ASN 204 A ASN 545 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale8 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale9 D O4 BMA . D BMA 3 1_555 D C1 BMA . D BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? metalc ? metalc1 G ZN ZN . A ZN 3 1_555 A OE2 GLU 318 A GLU 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc2 G ZN ZN . A ZN 3 1_555 A OE1 GLU 318 A GLU 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc3 G ZN ZN . A ZN 3 1_555 K O HOH . A HOH 3148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 H ZN ZN . A ZN 4 1_555 A NE2 HIS 247 A HIS 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc5 A OD1 ASP 54 A ASP 395 1_555 F FE FE . A FE 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc6 A OH TYR 92 A TYR 433 1_555 F FE FE . A FE 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc7 A OH TYR 185 A TYR 526 1_555 F FE FE . A FE 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc8 A NE2 HIS 254 A HIS 595 1_555 F FE FE . A FE 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc9 J O2 CO3 . A CO3 2001 1_555 F FE FE . A FE 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc10 J O1 CO3 . A CO3 2001 1_555 F FE FE . A FE 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DWH _atom_sites.fract_transf_matrix[1][1] 0.015727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00503 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 3001 1 NAG NAG . F 6 FE A 1 3009 1 FE FE . G 7 ZN A 1 3 3 ZN ZN . H 7 ZN A 1 4 4 ZN ZN . I 8 SO4 A 1 1001 1 SO4 SO4 . J 9 CO3 A 1 2001 1 CO3 CO3 . K 10 HOH A 1 3010 1 HOH HOH . K 10 HOH A 2 3011 2 HOH HOH . K 10 HOH A 3 3012 3 HOH HOH . K 10 HOH A 4 3013 4 HOH HOH . K 10 HOH A 5 3014 5 HOH HOH . K 10 HOH A 6 3015 6 HOH HOH . K 10 HOH A 7 3016 7 HOH HOH . K 10 HOH A 8 3017 8 HOH HOH . K 10 HOH A 9 3018 9 HOH HOH . K 10 HOH A 10 3019 10 HOH HOH . K 10 HOH A 11 3020 11 HOH HOH . K 10 HOH A 12 3021 12 HOH HOH . K 10 HOH A 13 3022 13 HOH HOH . K 10 HOH A 14 3023 14 HOH HOH . K 10 HOH A 15 3024 15 HOH HOH . K 10 HOH A 16 3025 16 HOH HOH . K 10 HOH A 17 3026 17 HOH HOH . K 10 HOH A 18 3027 18 HOH HOH . K 10 HOH A 19 3028 19 HOH HOH . K 10 HOH A 20 3029 20 HOH HOH . K 10 HOH A 21 3030 21 HOH HOH . K 10 HOH A 22 3031 22 HOH HOH . K 10 HOH A 23 3032 23 HOH HOH . K 10 HOH A 24 3033 24 HOH HOH . K 10 HOH A 25 3034 25 HOH HOH . K 10 HOH A 26 3035 26 HOH HOH . K 10 HOH A 27 3036 27 HOH HOH . K 10 HOH A 28 3037 28 HOH HOH . K 10 HOH A 29 3038 29 HOH HOH . K 10 HOH A 30 3039 30 HOH HOH . K 10 HOH A 31 3040 31 HOH HOH . K 10 HOH A 32 3041 32 HOH HOH . K 10 HOH A 33 3042 33 HOH HOH . K 10 HOH A 34 3043 34 HOH HOH . K 10 HOH A 35 3044 35 HOH HOH . K 10 HOH A 36 3045 36 HOH HOH . K 10 HOH A 37 3046 37 HOH HOH . K 10 HOH A 38 3047 38 HOH HOH . K 10 HOH A 39 3048 39 HOH HOH . K 10 HOH A 40 3049 40 HOH HOH . K 10 HOH A 41 3050 41 HOH HOH . K 10 HOH A 42 3051 42 HOH HOH . K 10 HOH A 43 3052 43 HOH HOH . K 10 HOH A 44 3053 44 HOH HOH . K 10 HOH A 45 3054 45 HOH HOH . K 10 HOH A 46 3055 46 HOH HOH . K 10 HOH A 47 3056 47 HOH HOH . K 10 HOH A 48 3057 48 HOH HOH . K 10 HOH A 49 3058 49 HOH HOH . K 10 HOH A 50 3059 50 HOH HOH . K 10 HOH A 51 3060 51 HOH HOH . K 10 HOH A 52 3061 52 HOH HOH . K 10 HOH A 53 3062 53 HOH HOH . K 10 HOH A 54 3063 54 HOH HOH . K 10 HOH A 55 3064 55 HOH HOH . K 10 HOH A 56 3065 56 HOH HOH . K 10 HOH A 57 3066 57 HOH HOH . K 10 HOH A 58 3067 58 HOH HOH . K 10 HOH A 59 3068 59 HOH HOH . K 10 HOH A 60 3069 60 HOH HOH . K 10 HOH A 61 3070 61 HOH HOH . K 10 HOH A 62 3071 62 HOH HOH . K 10 HOH A 63 3072 63 HOH HOH . K 10 HOH A 64 3073 64 HOH HOH . K 10 HOH A 65 3074 65 HOH HOH . K 10 HOH A 66 3075 66 HOH HOH . K 10 HOH A 67 3076 67 HOH HOH . K 10 HOH A 68 3077 68 HOH HOH . K 10 HOH A 69 3078 69 HOH HOH . K 10 HOH A 70 3079 70 HOH HOH . K 10 HOH A 71 3080 71 HOH HOH . K 10 HOH A 72 3081 72 HOH HOH . K 10 HOH A 73 3082 73 HOH HOH . K 10 HOH A 74 3083 74 HOH HOH . K 10 HOH A 75 3084 75 HOH HOH . K 10 HOH A 76 3085 76 HOH HOH . K 10 HOH A 77 3086 77 HOH HOH . K 10 HOH A 78 3087 78 HOH HOH . K 10 HOH A 79 3088 79 HOH HOH . K 10 HOH A 80 3089 80 HOH HOH . K 10 HOH A 81 3090 81 HOH HOH . K 10 HOH A 82 3091 82 HOH HOH . K 10 HOH A 83 3092 83 HOH HOH . K 10 HOH A 84 3093 84 HOH HOH . K 10 HOH A 85 3094 85 HOH HOH . K 10 HOH A 86 3095 86 HOH HOH . K 10 HOH A 87 3096 87 HOH HOH . K 10 HOH A 88 3097 89 HOH HOH . K 10 HOH A 89 3098 90 HOH HOH . K 10 HOH A 90 3099 91 HOH HOH . K 10 HOH A 91 3100 92 HOH HOH . K 10 HOH A 92 3101 93 HOH HOH . K 10 HOH A 93 3102 94 HOH HOH . K 10 HOH A 94 3103 95 HOH HOH . K 10 HOH A 95 3104 96 HOH HOH . K 10 HOH A 96 3105 97 HOH HOH . K 10 HOH A 97 3106 98 HOH HOH . K 10 HOH A 98 3107 99 HOH HOH . K 10 HOH A 99 3108 100 HOH HOH . K 10 HOH A 100 3109 101 HOH HOH . K 10 HOH A 101 3110 102 HOH HOH . K 10 HOH A 102 3111 103 HOH HOH . K 10 HOH A 103 3112 104 HOH HOH . K 10 HOH A 104 3113 105 HOH HOH . K 10 HOH A 105 3114 106 HOH HOH . K 10 HOH A 106 3115 107 HOH HOH . K 10 HOH A 107 3116 108 HOH HOH . K 10 HOH A 108 3117 109 HOH HOH . K 10 HOH A 109 3118 110 HOH HOH . K 10 HOH A 110 3119 111 HOH HOH . K 10 HOH A 111 3120 112 HOH HOH . K 10 HOH A 112 3121 113 HOH HOH . K 10 HOH A 113 3122 114 HOH HOH . K 10 HOH A 114 3123 115 HOH HOH . K 10 HOH A 115 3124 116 HOH HOH . K 10 HOH A 116 3125 117 HOH HOH . K 10 HOH A 117 3126 118 HOH HOH . K 10 HOH A 118 3127 120 HOH HOH . K 10 HOH A 119 3128 121 HOH HOH . K 10 HOH A 120 3129 122 HOH HOH . K 10 HOH A 121 3130 123 HOH HOH . K 10 HOH A 122 3131 124 HOH HOH . K 10 HOH A 123 3132 126 HOH HOH . K 10 HOH A 124 3133 127 HOH HOH . K 10 HOH A 125 3134 128 HOH HOH . K 10 HOH A 126 3135 129 HOH HOH . K 10 HOH A 127 3136 130 HOH HOH . K 10 HOH A 128 3137 131 HOH HOH . K 10 HOH A 129 3138 132 HOH HOH . K 10 HOH A 130 3139 133 HOH HOH . K 10 HOH A 131 3140 134 HOH HOH . K 10 HOH A 132 3141 135 HOH HOH . K 10 HOH A 133 3142 136 HOH HOH . K 10 HOH A 134 3143 137 HOH HOH . K 10 HOH A 135 3144 138 HOH HOH . K 10 HOH A 136 3145 139 HOH HOH . K 10 HOH A 137 3146 140 HOH HOH . K 10 HOH A 138 3147 141 HOH HOH . K 10 HOH A 139 3148 142 HOH HOH . K 10 HOH A 140 3149 143 HOH HOH . K 10 HOH A 141 3150 144 HOH HOH . K 10 HOH A 142 3151 145 HOH HOH . K 10 HOH A 143 3152 146 HOH HOH . K 10 HOH A 144 3153 147 HOH HOH . K 10 HOH A 145 3154 148 HOH HOH . K 10 HOH A 146 3155 149 HOH HOH . K 10 HOH A 147 3156 150 HOH HOH . K 10 HOH A 148 3157 151 HOH HOH . K 10 HOH A 149 3158 152 HOH HOH . K 10 HOH A 150 3159 153 HOH HOH . K 10 HOH A 151 3160 155 HOH HOH . K 10 HOH A 152 3161 156 HOH HOH . K 10 HOH A 153 3162 157 HOH HOH . K 10 HOH A 154 3163 158 HOH HOH . K 10 HOH A 155 3164 159 HOH HOH . K 10 HOH A 156 3165 160 HOH HOH . K 10 HOH A 157 3166 161 HOH HOH . K 10 HOH A 158 3167 162 HOH HOH . K 10 HOH A 159 3168 163 HOH HOH . K 10 HOH A 160 3169 164 HOH HOH . K 10 HOH A 161 3170 165 HOH HOH . K 10 HOH A 162 3171 166 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 7 _atom_site.Cartn_x 3.183 _atom_site.Cartn_y 10.241 _atom_site.Cartn_z 7.526 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 4 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #