data_2DWO # _model_server_result.job_id DmjvQC53GcvhYBIhZxikXw _model_server_result.datetime_utc '2024-11-26 07:45:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 2DWO # _exptl.entry_id 2DWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.042 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOENOLPYRUVATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DWO _cell.length_a 102.29 _cell.length_b 102.29 _cell.length_c 258.62 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 51.145 88.585739 43.103333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H5 O6 P' _chem_comp.formula_weight 168.042 _chem_comp.id PEP _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOENOLPYRUVATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEP doub 310 n n C1 O2' PEP sing 311 n n C1 C2 PEP sing 312 n n O2' HO2 PEP sing 313 n n C2 C3 PEP doub 314 n n C2 O2 PEP sing 315 n n C3 H31 PEP sing 316 n n C3 H32 PEP sing 317 n n O2 P PEP sing 318 n n P O1P PEP doub 319 n n P O2P PEP sing 320 n n P O3P PEP sing 321 n n O2P HOP2 PEP sing 322 n n O3P HOP3 PEP sing 323 n n # _atom_sites.entry_id 2DWO _atom_sites.fract_transf_matrix[1][1] 0.009776 _atom_sites.fract_transf_matrix[1][2] 0.005644 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 720 720 F6P F6P . C 3 ADP A 1 700 700 ADP ADP . D 4 PEP A 1 701 701 PEP PEP . E 5 HOH A 1 721 1 HOH HOH . E 5 HOH A 2 722 2 HOH HOH . E 5 HOH A 3 723 3 HOH HOH . E 5 HOH A 4 724 4 HOH HOH . E 5 HOH A 5 725 5 HOH HOH . E 5 HOH A 6 726 6 HOH HOH . E 5 HOH A 7 727 7 HOH HOH . E 5 HOH A 8 728 8 HOH HOH . E 5 HOH A 9 729 9 HOH HOH . E 5 HOH A 10 730 10 HOH HOH . E 5 HOH A 11 731 11 HOH HOH . E 5 HOH A 12 732 12 HOH HOH . E 5 HOH A 13 733 13 HOH HOH . E 5 HOH A 14 734 14 HOH HOH . E 5 HOH A 15 735 15 HOH HOH . E 5 HOH A 16 736 16 HOH HOH . E 5 HOH A 17 737 17 HOH HOH . E 5 HOH A 18 738 18 HOH HOH . E 5 HOH A 19 739 19 HOH HOH . E 5 HOH A 20 740 20 HOH HOH . E 5 HOH A 21 741 21 HOH HOH . E 5 HOH A 22 742 22 HOH HOH . E 5 HOH A 23 743 23 HOH HOH . E 5 HOH A 24 744 24 HOH HOH . E 5 HOH A 25 745 25 HOH HOH . E 5 HOH A 26 746 26 HOH HOH . E 5 HOH A 27 747 27 HOH HOH . E 5 HOH A 28 748 28 HOH HOH . E 5 HOH A 29 749 29 HOH HOH . E 5 HOH A 30 750 30 HOH HOH . E 5 HOH A 31 751 31 HOH HOH . E 5 HOH A 32 752 32 HOH HOH . E 5 HOH A 33 753 33 HOH HOH . E 5 HOH A 34 754 34 HOH HOH . E 5 HOH A 35 755 35 HOH HOH . E 5 HOH A 36 756 36 HOH HOH . E 5 HOH A 37 757 37 HOH HOH . E 5 HOH A 38 758 38 HOH HOH . E 5 HOH A 39 759 39 HOH HOH . E 5 HOH A 40 760 40 HOH HOH . E 5 HOH A 41 761 41 HOH HOH . E 5 HOH A 42 762 42 HOH HOH . E 5 HOH A 43 763 43 HOH HOH . E 5 HOH A 44 764 45 HOH HOH . E 5 HOH A 45 765 46 HOH HOH . E 5 HOH A 46 766 47 HOH HOH . E 5 HOH A 47 767 48 HOH HOH . E 5 HOH A 48 768 49 HOH HOH . E 5 HOH A 49 769 50 HOH HOH . E 5 HOH A 50 770 51 HOH HOH . E 5 HOH A 51 771 52 HOH HOH . E 5 HOH A 52 772 53 HOH HOH . E 5 HOH A 53 773 54 HOH HOH . E 5 HOH A 54 774 55 HOH HOH . E 5 HOH A 55 775 56 HOH HOH . E 5 HOH A 56 776 57 HOH HOH . E 5 HOH A 57 777 58 HOH HOH . E 5 HOH A 58 778 59 HOH HOH . E 5 HOH A 59 779 60 HOH HOH . E 5 HOH A 60 780 61 HOH HOH . E 5 HOH A 61 781 62 HOH HOH . E 5 HOH A 62 782 63 HOH HOH . E 5 HOH A 63 783 64 HOH HOH . E 5 HOH A 64 784 65 HOH HOH . E 5 HOH A 65 785 66 HOH HOH . E 5 HOH A 66 786 67 HOH HOH . E 5 HOH A 67 787 68 HOH HOH . E 5 HOH A 68 788 69 HOH HOH . E 5 HOH A 69 789 70 HOH HOH . E 5 HOH A 70 790 71 HOH HOH . E 5 HOH A 71 791 72 HOH HOH . E 5 HOH A 72 792 73 HOH HOH . E 5 HOH A 73 793 74 HOH HOH . E 5 HOH A 74 794 75 HOH HOH . E 5 HOH A 75 795 76 HOH HOH . E 5 HOH A 76 796 77 HOH HOH . E 5 HOH A 77 797 78 HOH HOH . E 5 HOH A 78 798 79 HOH HOH . E 5 HOH A 79 799 80 HOH HOH . E 5 HOH A 80 800 81 HOH HOH . E 5 HOH A 81 801 82 HOH HOH . E 5 HOH A 82 802 83 HOH HOH . E 5 HOH A 83 803 84 HOH HOH . E 5 HOH A 84 804 85 HOH HOH . E 5 HOH A 85 805 86 HOH HOH . E 5 HOH A 86 806 87 HOH HOH . E 5 HOH A 87 807 88 HOH HOH . E 5 HOH A 88 808 89 HOH HOH . E 5 HOH A 89 809 90 HOH HOH . E 5 HOH A 90 810 91 HOH HOH . E 5 HOH A 91 811 92 HOH HOH . E 5 HOH A 92 812 93 HOH HOH . E 5 HOH A 93 813 94 HOH HOH . E 5 HOH A 94 814 95 HOH HOH . E 5 HOH A 95 815 96 HOH HOH . E 5 HOH A 96 816 97 HOH HOH . E 5 HOH A 97 817 98 HOH HOH . E 5 HOH A 98 818 99 HOH HOH . E 5 HOH A 99 819 100 HOH HOH . E 5 HOH A 100 820 101 HOH HOH . E 5 HOH A 101 821 102 HOH HOH . E 5 HOH A 102 822 103 HOH HOH . E 5 HOH A 103 823 104 HOH HOH . E 5 HOH A 104 824 105 HOH HOH . E 5 HOH A 105 825 106 HOH HOH . E 5 HOH A 106 826 107 HOH HOH . E 5 HOH A 107 827 108 HOH HOH . E 5 HOH A 108 828 109 HOH HOH . E 5 HOH A 109 829 110 HOH HOH . E 5 HOH A 110 830 111 HOH HOH . E 5 HOH A 111 831 112 HOH HOH . E 5 HOH A 112 832 113 HOH HOH . E 5 HOH A 113 833 114 HOH HOH . E 5 HOH A 114 834 115 HOH HOH . E 5 HOH A 115 835 116 HOH HOH . E 5 HOH A 116 836 117 HOH HOH . E 5 HOH A 117 837 118 HOH HOH . E 5 HOH A 118 838 119 HOH HOH . E 5 HOH A 119 839 120 HOH HOH . E 5 HOH A 120 840 121 HOH HOH . E 5 HOH A 121 841 122 HOH HOH . E 5 HOH A 122 842 123 HOH HOH . E 5 HOH A 123 843 124 HOH HOH . E 5 HOH A 124 844 125 HOH HOH . E 5 HOH A 125 845 126 HOH HOH . E 5 HOH A 126 846 127 HOH HOH . E 5 HOH A 127 847 128 HOH HOH . E 5 HOH A 128 848 129 HOH HOH . E 5 HOH A 129 849 130 HOH HOH . E 5 HOH A 130 850 131 HOH HOH . E 5 HOH A 131 851 132 HOH HOH . E 5 HOH A 132 852 133 HOH HOH . E 5 HOH A 133 853 134 HOH HOH . E 5 HOH A 134 854 135 HOH HOH . E 5 HOH A 135 855 136 HOH HOH . E 5 HOH A 136 856 137 HOH HOH . E 5 HOH A 137 857 138 HOH HOH . E 5 HOH A 138 858 139 HOH HOH . E 5 HOH A 139 859 140 HOH HOH . E 5 HOH A 140 860 141 HOH HOH . E 5 HOH A 141 861 142 HOH HOH . E 5 HOH A 142 862 143 HOH HOH . E 5 HOH A 143 863 144 HOH HOH . E 5 HOH A 144 864 145 HOH HOH . E 5 HOH A 145 865 146 HOH HOH . E 5 HOH A 146 866 147 HOH HOH . E 5 HOH A 147 867 148 HOH HOH . E 5 HOH A 148 868 149 HOH HOH . E 5 HOH A 149 869 150 HOH HOH . E 5 HOH A 150 870 151 HOH HOH . E 5 HOH A 151 871 152 HOH HOH . E 5 HOH A 152 872 153 HOH HOH . E 5 HOH A 153 873 154 HOH HOH . E 5 HOH A 154 874 155 HOH HOH . E 5 HOH A 155 875 156 HOH HOH . E 5 HOH A 156 876 157 HOH HOH . E 5 HOH A 157 877 159 HOH HOH . E 5 HOH A 158 878 160 HOH HOH . E 5 HOH A 159 879 161 HOH HOH . E 5 HOH A 160 880 162 HOH HOH . E 5 HOH A 161 881 163 HOH HOH . E 5 HOH A 162 882 164 HOH HOH . E 5 HOH A 163 883 165 HOH HOH . E 5 HOH A 164 884 166 HOH HOH . E 5 HOH A 165 885 167 HOH HOH . E 5 HOH A 166 886 168 HOH HOH . E 5 HOH A 167 887 169 HOH HOH . E 5 HOH A 168 888 170 HOH HOH . E 5 HOH A 169 889 171 HOH HOH . E 5 HOH A 170 890 172 HOH HOH . E 5 HOH A 171 891 173 HOH HOH . E 5 HOH A 172 892 175 HOH HOH . E 5 HOH A 173 893 176 HOH HOH . E 5 HOH A 174 894 177 HOH HOH . E 5 HOH A 175 895 178 HOH HOH . E 5 HOH A 176 896 179 HOH HOH . E 5 HOH A 177 897 180 HOH HOH . E 5 HOH A 178 898 181 HOH HOH . E 5 HOH A 179 899 182 HOH HOH . E 5 HOH A 180 900 183 HOH HOH . E 5 HOH A 181 901 184 HOH HOH . E 5 HOH A 182 902 185 HOH HOH . E 5 HOH A 183 903 186 HOH HOH . E 5 HOH A 184 904 187 HOH HOH . E 5 HOH A 185 905 188 HOH HOH . E 5 HOH A 186 906 189 HOH HOH . E 5 HOH A 187 907 190 HOH HOH . E 5 HOH A 188 908 191 HOH HOH . E 5 HOH A 189 909 193 HOH HOH . E 5 HOH A 190 910 194 HOH HOH . E 5 HOH A 191 911 195 HOH HOH . E 5 HOH A 192 912 196 HOH HOH . E 5 HOH A 193 913 197 HOH HOH . E 5 HOH A 194 914 198 HOH HOH . E 5 HOH A 195 915 199 HOH HOH . E 5 HOH A 196 916 200 HOH HOH . E 5 HOH A 197 917 201 HOH HOH . E 5 HOH A 198 918 202 HOH HOH . E 5 HOH A 199 919 203 HOH HOH . E 5 HOH A 200 920 204 HOH HOH . E 5 HOH A 201 921 205 HOH HOH . E 5 HOH A 202 922 206 HOH HOH . E 5 HOH A 203 923 209 HOH HOH . E 5 HOH A 204 924 210 HOH HOH . E 5 HOH A 205 925 211 HOH HOH . E 5 HOH A 206 926 212 HOH HOH . E 5 HOH A 207 927 213 HOH HOH . E 5 HOH A 208 928 214 HOH HOH . E 5 HOH A 209 929 215 HOH HOH . E 5 HOH A 210 930 216 HOH HOH . E 5 HOH A 211 931 217 HOH HOH . E 5 HOH A 212 932 218 HOH HOH . E 5 HOH A 213 933 219 HOH HOH . E 5 HOH A 214 934 220 HOH HOH . E 5 HOH A 215 935 221 HOH HOH . E 5 HOH A 216 936 223 HOH HOH . E 5 HOH A 217 937 224 HOH HOH . E 5 HOH A 218 938 225 HOH HOH . E 5 HOH A 219 939 226 HOH HOH . E 5 HOH A 220 940 227 HOH HOH . E 5 HOH A 221 941 228 HOH HOH . E 5 HOH A 222 942 229 HOH HOH . E 5 HOH A 223 943 230 HOH HOH . E 5 HOH A 224 944 231 HOH HOH . E 5 HOH A 225 945 232 HOH HOH . E 5 HOH A 226 946 233 HOH HOH . E 5 HOH A 227 947 234 HOH HOH . E 5 HOH A 228 948 235 HOH HOH . E 5 HOH A 229 949 236 HOH HOH . E 5 HOH A 230 950 237 HOH HOH . E 5 HOH A 231 951 238 HOH HOH . E 5 HOH A 232 952 239 HOH HOH . E 5 HOH A 233 953 240 HOH HOH . E 5 HOH A 234 954 241 HOH HOH . E 5 HOH A 235 955 242 HOH HOH . E 5 HOH A 236 956 243 HOH HOH . E 5 HOH A 237 957 244 HOH HOH . E 5 HOH A 238 958 246 HOH HOH . E 5 HOH A 239 959 247 HOH HOH . E 5 HOH A 240 960 249 HOH HOH . E 5 HOH A 241 961 250 HOH HOH . E 5 HOH A 242 962 251 HOH HOH . E 5 HOH A 243 963 252 HOH HOH . E 5 HOH A 244 964 253 HOH HOH . E 5 HOH A 245 965 254 HOH HOH . E 5 HOH A 246 966 255 HOH HOH . E 5 HOH A 247 967 256 HOH HOH . E 5 HOH A 248 968 257 HOH HOH . E 5 HOH A 249 969 258 HOH HOH . E 5 HOH A 250 970 259 HOH HOH . E 5 HOH A 251 971 260 HOH HOH . E 5 HOH A 252 972 261 HOH HOH . E 5 HOH A 253 973 262 HOH HOH . E 5 HOH A 254 974 264 HOH HOH . E 5 HOH A 255 975 265 HOH HOH . E 5 HOH A 256 976 266 HOH HOH . E 5 HOH A 257 977 267 HOH HOH . E 5 HOH A 258 978 268 HOH HOH . E 5 HOH A 259 979 269 HOH HOH . E 5 HOH A 260 980 270 HOH HOH . E 5 HOH A 261 981 271 HOH HOH . E 5 HOH A 262 982 272 HOH HOH . E 5 HOH A 263 983 273 HOH HOH . E 5 HOH A 264 984 274 HOH HOH . E 5 HOH A 265 985 276 HOH HOH . E 5 HOH A 266 986 277 HOH HOH . E 5 HOH A 267 987 278 HOH HOH . E 5 HOH A 268 988 279 HOH HOH . E 5 HOH A 269 989 280 HOH HOH . E 5 HOH A 270 990 281 HOH HOH . E 5 HOH A 271 991 282 HOH HOH . E 5 HOH A 272 992 283 HOH HOH . E 5 HOH A 273 993 284 HOH HOH . E 5 HOH A 274 994 285 HOH HOH . E 5 HOH A 275 995 286 HOH HOH . E 5 HOH A 276 996 287 HOH HOH . E 5 HOH A 277 997 288 HOH HOH . E 5 HOH A 278 998 289 HOH HOH . E 5 HOH A 279 999 290 HOH HOH . E 5 HOH A 280 1000 291 HOH HOH . E 5 HOH A 281 1001 292 HOH HOH . E 5 HOH A 282 1002 294 HOH HOH . E 5 HOH A 283 1003 295 HOH HOH . E 5 HOH A 284 1004 296 HOH HOH . E 5 HOH A 285 1005 297 HOH HOH . E 5 HOH A 286 1006 298 HOH HOH . E 5 HOH A 287 1007 299 HOH HOH . E 5 HOH A 288 1008 300 HOH HOH . E 5 HOH A 289 1009 301 HOH HOH . E 5 HOH A 290 1010 302 HOH HOH . E 5 HOH A 291 1011 303 HOH HOH . E 5 HOH A 292 1012 304 HOH HOH . E 5 HOH A 293 1013 306 HOH HOH . E 5 HOH A 294 1014 307 HOH HOH . E 5 HOH A 295 1015 308 HOH HOH . E 5 HOH A 296 1016 309 HOH HOH . E 5 HOH A 297 1017 310 HOH HOH . E 5 HOH A 298 1018 311 HOH HOH . E 5 HOH A 299 1019 312 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEP . . . D 4 -4.019 48.626 -4.707 1 47.27 ? C1 PEP 701 A 1 HETATM 2 O O1 PEP . . . D 4 -4.502 48.405 -3.579 1 47.5 ? O1 PEP 701 A 1 HETATM 3 O O2' PEP . . . D 4 -4.581 48.13 -5.732 1 48.83 ? O2' PEP 701 A 1 HETATM 4 C C2 PEP . . . D 4 -2.764 49.472 -4.874 1 46.36 ? C2 PEP 701 A 1 HETATM 5 C C3 PEP . . . D 4 -2.446 50.135 -6.02 1 43.58 ? C3 PEP 701 A 1 HETATM 6 O O2 PEP . . . D 4 -1.94 49.565 -3.805 1 45.99 ? O2 PEP 701 A 1 HETATM 7 P P PEP . . . D 4 -0.617 50.317 -3.537 1 47.27 ? P PEP 701 A 1 HETATM 8 O O1P PEP . . . D 4 0.107 49.335 -2.317 1 46.59 ? O1P PEP 701 A 1 HETATM 9 O O2P PEP . . . D 4 0.304 50.462 -4.868 1 47.49 ? O2P PEP 701 A 1 HETATM 10 O O3P PEP . . . D 4 -1.168 51.518 -2.772 1 47.42 ? O3P PEP 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #