data_2DWT # _model_server_result.job_id UVHfgEMNz1KOB_viwbOY2w _model_server_result.datetime_utc '2024-12-26 15:15:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dwt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2DWT # _exptl.entry_id 2DWT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DWT _cell.length_a 74.74 _cell.length_b 74.74 _cell.length_c 153.146 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DWT _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 83 A HIS 126 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A NE2 HIS 88 A HIS 131 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A NE2 HIS 123 A HIS 166 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc4 A SG CYS 124 A CYS 167 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc5 A ND1 HIS 134 A HIS 177 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc6 A SD MET 139 A MET 182 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc7 A NE2 HIS 295 A HIS 338 2_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc8 C CU CU . A CU 402 1_555 D O1 NO2 . A NO2 501 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc9 C CU CU . A CU 402 1_555 D O2 NO2 . A NO2 501 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc10 C CU CU . A CU 402 3_555 D O2 NO2 . A NO2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc11 C CU CU . A CU 402 1_555 D N NO2 . A NO2 501 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO2 doub 237 n n N O2 NO2 sing 238 n n # _atom_sites.entry_id 2DWT _atom_sites.fract_transf_matrix[1][1] 0.01338 _atom_sites.fract_transf_matrix[1][2] 0.007725 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 401 401 CU CU . C 2 CU A 1 402 402 CU CU . D 3 NO2 A 1 501 501 NO2 NO2 . E 3 NO2 A 1 502 502 NO2 NO2 . F 4 HOH A 1 503 1 HOH HOH . F 4 HOH A 2 504 2 HOH HOH . F 4 HOH A 3 505 3 HOH HOH . F 4 HOH A 4 506 4 HOH HOH . F 4 HOH A 5 507 5 HOH HOH . F 4 HOH A 6 508 6 HOH HOH . F 4 HOH A 7 509 7 HOH HOH . F 4 HOH A 8 510 8 HOH HOH . F 4 HOH A 9 511 9 HOH HOH . F 4 HOH A 10 512 10 HOH HOH . F 4 HOH A 11 513 11 HOH HOH . F 4 HOH A 12 514 12 HOH HOH . F 4 HOH A 13 515 13 HOH HOH . F 4 HOH A 14 516 14 HOH HOH . F 4 HOH A 15 517 15 HOH HOH . F 4 HOH A 16 518 16 HOH HOH . F 4 HOH A 17 519 17 HOH HOH . F 4 HOH A 18 520 18 HOH HOH . F 4 HOH A 19 521 19 HOH HOH . F 4 HOH A 20 522 20 HOH HOH . F 4 HOH A 21 523 21 HOH HOH . F 4 HOH A 22 524 22 HOH HOH . F 4 HOH A 23 525 23 HOH HOH . F 4 HOH A 24 526 24 HOH HOH . F 4 HOH A 25 527 25 HOH HOH . F 4 HOH A 26 528 26 HOH HOH . F 4 HOH A 27 529 27 HOH HOH . F 4 HOH A 28 530 28 HOH HOH . F 4 HOH A 29 531 29 HOH HOH . F 4 HOH A 30 532 30 HOH HOH . F 4 HOH A 31 533 31 HOH HOH . F 4 HOH A 32 534 32 HOH HOH . F 4 HOH A 33 535 33 HOH HOH . F 4 HOH A 34 536 34 HOH HOH . F 4 HOH A 35 537 35 HOH HOH . F 4 HOH A 36 538 36 HOH HOH . F 4 HOH A 37 539 37 HOH HOH . F 4 HOH A 38 540 38 HOH HOH . F 4 HOH A 39 541 39 HOH HOH . F 4 HOH A 40 542 40 HOH HOH . F 4 HOH A 41 543 41 HOH HOH . F 4 HOH A 42 544 42 HOH HOH . F 4 HOH A 43 545 43 HOH HOH . F 4 HOH A 44 546 44 HOH HOH . F 4 HOH A 45 547 45 HOH HOH . F 4 HOH A 46 548 46 HOH HOH . F 4 HOH A 47 549 47 HOH HOH . F 4 HOH A 48 550 48 HOH HOH . F 4 HOH A 49 551 49 HOH HOH . F 4 HOH A 50 552 50 HOH HOH . F 4 HOH A 51 553 51 HOH HOH . F 4 HOH A 52 554 52 HOH HOH . F 4 HOH A 53 555 53 HOH HOH . F 4 HOH A 54 556 54 HOH HOH . F 4 HOH A 55 557 55 HOH HOH . F 4 HOH A 56 558 56 HOH HOH . F 4 HOH A 57 559 57 HOH HOH . F 4 HOH A 58 560 58 HOH HOH . F 4 HOH A 59 561 59 HOH HOH . F 4 HOH A 60 562 60 HOH HOH . F 4 HOH A 61 563 61 HOH HOH . F 4 HOH A 62 564 62 HOH HOH . F 4 HOH A 63 565 63 HOH HOH . F 4 HOH A 64 566 64 HOH HOH . F 4 HOH A 65 567 65 HOH HOH . F 4 HOH A 66 568 66 HOH HOH . F 4 HOH A 67 569 67 HOH HOH . F 4 HOH A 68 570 68 HOH HOH . F 4 HOH A 69 571 69 HOH HOH . F 4 HOH A 70 572 70 HOH HOH . F 4 HOH A 71 573 71 HOH HOH . F 4 HOH A 72 574 72 HOH HOH . F 4 HOH A 73 575 73 HOH HOH . F 4 HOH A 74 576 74 HOH HOH . F 4 HOH A 75 577 75 HOH HOH . F 4 HOH A 76 578 76 HOH HOH . F 4 HOH A 77 579 77 HOH HOH . F 4 HOH A 78 580 78 HOH HOH . F 4 HOH A 79 581 79 HOH HOH . F 4 HOH A 80 582 80 HOH HOH . F 4 HOH A 81 583 81 HOH HOH . F 4 HOH A 82 584 82 HOH HOH . F 4 HOH A 83 585 83 HOH HOH . F 4 HOH A 84 586 84 HOH HOH . F 4 HOH A 85 587 85 HOH HOH . F 4 HOH A 86 588 86 HOH HOH . F 4 HOH A 87 589 87 HOH HOH . F 4 HOH A 88 590 88 HOH HOH . F 4 HOH A 89 591 89 HOH HOH . F 4 HOH A 90 592 90 HOH HOH . F 4 HOH A 91 593 91 HOH HOH . F 4 HOH A 92 594 92 HOH HOH . F 4 HOH A 93 595 93 HOH HOH . F 4 HOH A 94 596 94 HOH HOH . F 4 HOH A 95 597 95 HOH HOH . F 4 HOH A 96 598 96 HOH HOH . F 4 HOH A 97 599 97 HOH HOH . F 4 HOH A 98 600 98 HOH HOH . F 4 HOH A 99 601 99 HOH HOH . F 4 HOH A 100 602 100 HOH HOH . F 4 HOH A 101 603 101 HOH HOH . F 4 HOH A 102 604 102 HOH HOH . F 4 HOH A 103 605 103 HOH HOH . F 4 HOH A 104 606 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . . . D 3 17.936 2.962 -1.596 1 40.6 ? N NO2 501 A 1 HETATM 2 O O1 NO2 . . . D 3 17.379 2.514 -2.872 1 33.88 ? O1 NO2 501 A 1 HETATM 3 O O2 NO2 . . . D 3 18.468 1.957 -0.684 1 39.19 ? O2 NO2 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 3 #