data_2DXN # _model_server_result.job_id WPecos6e0Mp01e7U47TAkw _model_server_result.datetime_utc '2025-03-09 02:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 2DXN # _exptl.entry_id 2DXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DXN _cell.length_a 164.274 _cell.length_b 164.274 _cell.length_c 164.274 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 B SG CYS 269 B CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 269 A CYS 269 1_555 B SG CYS 54 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc2 A NE2 HIS 10 A HIS 10 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A OD2 ASP 50 A ASP 50 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 A OD2 ASP 50 A ASP 50 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc5 A OD1 ASN 80 A ASN 80 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 A NE2 HIS 156 A HIS 156 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc7 A ND1 HIS 195 A HIS 195 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc8 A NE2 HIS 197 A HIS 197 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc9 B OD1 ASP 8 B ASP 8 1_555 E ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc10 B NE2 HIS 10 B HIS 10 1_555 E ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc11 B OD2 ASP 50 B ASP 50 1_555 E ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc12 B OD2 ASP 50 B ASP 50 1_555 F ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc13 B OD1 ASN 80 B ASN 80 1_555 F ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc14 B NE2 HIS 156 B HIS 156 1_555 F ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc15 B ND1 HIS 195 B HIS 195 1_555 F ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc16 B NE2 HIS 197 B HIS 197 1_555 E ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DXN _atom_sites.fract_transf_matrix[1][1] 0.006087 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 2 ZN A 1 1002 1002 ZN ZN . E 2 ZN B 1 1003 1003 ZN ZN . F 2 ZN B 1 1004 1004 ZN ZN . G 3 HOH A 1 1003 1 HOH HOH . G 3 HOH A 2 1004 3 HOH HOH . G 3 HOH A 3 1005 4 HOH HOH . G 3 HOH A 4 1006 6 HOH HOH . G 3 HOH A 5 1007 8 HOH HOH . G 3 HOH A 6 1008 10 HOH HOH . G 3 HOH A 7 1009 14 HOH HOH . G 3 HOH A 8 1010 15 HOH HOH . G 3 HOH A 9 1011 16 HOH HOH . G 3 HOH A 10 1012 19 HOH HOH . G 3 HOH A 11 1013 24 HOH HOH . G 3 HOH A 12 1014 25 HOH HOH . G 3 HOH A 13 1015 27 HOH HOH . G 3 HOH A 14 1016 30 HOH HOH . G 3 HOH A 15 1017 32 HOH HOH . G 3 HOH A 16 1018 35 HOH HOH . G 3 HOH A 17 1019 36 HOH HOH . G 3 HOH A 18 1020 37 HOH HOH . G 3 HOH A 19 1021 38 HOH HOH . G 3 HOH A 20 1022 42 HOH HOH . G 3 HOH A 21 1023 44 HOH HOH . G 3 HOH A 22 1024 46 HOH HOH . G 3 HOH A 23 1025 47 HOH HOH . G 3 HOH A 24 1026 49 HOH HOH . G 3 HOH A 25 1027 52 HOH HOH . G 3 HOH A 26 1028 54 HOH HOH . G 3 HOH A 27 1029 55 HOH HOH . G 3 HOH A 28 1030 57 HOH HOH . G 3 HOH A 29 1031 58 HOH HOH . G 3 HOH A 30 1032 59 HOH HOH . G 3 HOH A 31 1033 60 HOH HOH . G 3 HOH A 32 1034 61 HOH HOH . G 3 HOH A 33 1035 63 HOH HOH . G 3 HOH A 34 1036 65 HOH HOH . G 3 HOH A 35 1037 67 HOH HOH . G 3 HOH A 36 1038 70 HOH HOH . G 3 HOH A 37 1039 72 HOH HOH . G 3 HOH A 38 1040 74 HOH HOH . G 3 HOH A 39 1041 76 HOH HOH . G 3 HOH A 40 1042 81 HOH HOH . H 3 HOH B 1 1005 2 HOH HOH . H 3 HOH B 2 1006 5 HOH HOH . H 3 HOH B 3 1007 7 HOH HOH . H 3 HOH B 4 1008 9 HOH HOH . H 3 HOH B 5 1009 11 HOH HOH . H 3 HOH B 6 1010 12 HOH HOH . H 3 HOH B 7 1011 13 HOH HOH . H 3 HOH B 8 1012 17 HOH HOH . H 3 HOH B 9 1013 18 HOH HOH . H 3 HOH B 10 1014 20 HOH HOH . H 3 HOH B 11 1015 21 HOH HOH . H 3 HOH B 12 1016 22 HOH HOH . H 3 HOH B 13 1017 23 HOH HOH . H 3 HOH B 14 1018 26 HOH HOH . H 3 HOH B 15 1019 28 HOH HOH . H 3 HOH B 16 1020 29 HOH HOH . H 3 HOH B 17 1021 31 HOH HOH . H 3 HOH B 18 1022 33 HOH HOH . H 3 HOH B 19 1023 34 HOH HOH . H 3 HOH B 20 1024 39 HOH HOH . H 3 HOH B 21 1025 40 HOH HOH . H 3 HOH B 22 1026 41 HOH HOH . H 3 HOH B 23 1027 43 HOH HOH . H 3 HOH B 24 1028 45 HOH HOH . H 3 HOH B 25 1029 48 HOH HOH . H 3 HOH B 26 1030 50 HOH HOH . H 3 HOH B 27 1031 51 HOH HOH . H 3 HOH B 28 1032 53 HOH HOH . H 3 HOH B 29 1033 56 HOH HOH . H 3 HOH B 30 1034 62 HOH HOH . H 3 HOH B 31 1035 64 HOH HOH . H 3 HOH B 32 1036 66 HOH HOH . H 3 HOH B 33 1037 68 HOH HOH . H 3 HOH B 34 1038 69 HOH HOH . H 3 HOH B 35 1039 71 HOH HOH . H 3 HOH B 36 1040 73 HOH HOH . H 3 HOH B 37 1041 75 HOH HOH . H 3 HOH B 38 1042 77 HOH HOH . H 3 HOH B 39 1043 78 HOH HOH . H 3 HOH B 40 1044 79 HOH HOH . H 3 HOH B 41 1045 80 HOH HOH . H 3 HOH B 42 1046 82 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 25.636 _atom_site.Cartn_y 8.496 _atom_site.Cartn_z -4.692 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 79.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #