data_2DY2
#
_model_server_result.job_id            fhBI_MkN9RZYA65Sd1n5oA 
_model_server_result.datetime_utc      '2025-07-30 19:31:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dy2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    2DY2 
#
_exptl.entry_id    2DY2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              63.546 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COPPER (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2DY2 
_cell.length_a            74.996 
_cell.length_b            74.996 
_cell.length_c            153.611 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DY2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 74.996 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 37.498 64.948441 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 83 A HIS 126 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc2 A NE2 HIS 88 A HIS 131 3_665 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc3 A NE2 HIS 123 A HIS 166 3_665 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc4 A SG CYS 124 A CYS 167 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc5 A ND1 HIS 134 A HIS 177 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc6 A SD MET 139 A MET 182 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc7 A NE2 HIS 295 A HIS 338 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc8 C CU CU . A CU 402 1_555 D O HOH . A HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
#
_chem_comp.formula           'Cu 2' 
_chem_comp.formula_weight    63.546 
_chem_comp.id                CU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COPPER (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2DY2 
_atom_sites.fract_transf_matrix[1][1]    0.013334 
_atom_sites.fract_transf_matrix[1][2]    0.007698 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015397 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 401 401 CU CU . 
C 2 CU A 1 402 402 CU CU . 
D 3 HOH A 1 403 1 HOH HOH . 
D 3 HOH A 2 404 2 HOH HOH . 
D 3 HOH A 3 405 3 HOH HOH . 
D 3 HOH A 4 406 4 HOH HOH . 
D 3 HOH A 5 407 5 HOH HOH . 
D 3 HOH A 6 408 6 HOH HOH . 
D 3 HOH A 7 409 7 HOH HOH . 
D 3 HOH A 8 410 8 HOH HOH . 
D 3 HOH A 9 411 9 HOH HOH . 
D 3 HOH A 10 412 10 HOH HOH . 
D 3 HOH A 11 413 11 HOH HOH . 
D 3 HOH A 12 414 12 HOH HOH . 
D 3 HOH A 13 415 13 HOH HOH . 
D 3 HOH A 14 416 14 HOH HOH . 
D 3 HOH A 15 417 15 HOH HOH . 
D 3 HOH A 16 418 16 HOH HOH . 
D 3 HOH A 17 419 17 HOH HOH . 
D 3 HOH A 18 420 18 HOH HOH . 
D 3 HOH A 19 421 19 HOH HOH . 
D 3 HOH A 20 422 20 HOH HOH . 
D 3 HOH A 21 423 21 HOH HOH . 
D 3 HOH A 22 424 22 HOH HOH . 
D 3 HOH A 23 425 23 HOH HOH . 
D 3 HOH A 24 426 24 HOH HOH . 
D 3 HOH A 25 427 25 HOH HOH . 
D 3 HOH A 26 428 26 HOH HOH . 
D 3 HOH A 27 429 27 HOH HOH . 
D 3 HOH A 28 430 28 HOH HOH . 
D 3 HOH A 29 431 29 HOH HOH . 
D 3 HOH A 30 432 30 HOH HOH . 
D 3 HOH A 31 433 31 HOH HOH . 
D 3 HOH A 32 434 32 HOH HOH . 
D 3 HOH A 33 435 33 HOH HOH . 
D 3 HOH A 34 436 34 HOH HOH . 
D 3 HOH A 35 437 35 HOH HOH . 
D 3 HOH A 36 438 36 HOH HOH . 
D 3 HOH A 37 439 37 HOH HOH . 
D 3 HOH A 38 440 38 HOH HOH . 
D 3 HOH A 39 441 39 HOH HOH . 
D 3 HOH A 40 442 40 HOH HOH . 
D 3 HOH A 41 443 41 HOH HOH . 
D 3 HOH A 42 444 42 HOH HOH . 
D 3 HOH A 43 445 43 HOH HOH . 
D 3 HOH A 44 446 44 HOH HOH . 
D 3 HOH A 45 447 45 HOH HOH . 
D 3 HOH A 46 448 46 HOH HOH . 
D 3 HOH A 47 449 47 HOH HOH . 
D 3 HOH A 48 450 48 HOH HOH . 
D 3 HOH A 49 451 49 HOH HOH . 
D 3 HOH A 50 452 50 HOH HOH . 
D 3 HOH A 51 453 51 HOH HOH . 
D 3 HOH A 52 454 52 HOH HOH . 
D 3 HOH A 53 455 53 HOH HOH . 
D 3 HOH A 54 456 54 HOH HOH . 
D 3 HOH A 55 457 55 HOH HOH . 
D 3 HOH A 56 458 56 HOH HOH . 
D 3 HOH A 57 459 57 HOH HOH . 
D 3 HOH A 58 460 58 HOH HOH . 
D 3 HOH A 59 461 59 HOH HOH . 
D 3 HOH A 60 462 60 HOH HOH . 
D 3 HOH A 61 463 61 HOH HOH . 
D 3 HOH A 62 464 62 HOH HOH . 
D 3 HOH A 63 465 63 HOH HOH . 
D 3 HOH A 64 466 64 HOH HOH . 
D 3 HOH A 65 467 65 HOH HOH . 
D 3 HOH A 66 468 66 HOH HOH . 
D 3 HOH A 67 469 67 HOH HOH . 
D 3 HOH A 68 470 68 HOH HOH . 
D 3 HOH A 69 471 69 HOH HOH . 
D 3 HOH A 70 472 70 HOH HOH . 
D 3 HOH A 71 473 71 HOH HOH . 
D 3 HOH A 72 474 72 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CU 
_atom_site.label_atom_id         CU 
_atom_site.label_comp_id         CU 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               20.946 
_atom_site.Cartn_y               2.676 
_atom_site.Cartn_z               -9.939 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CU 
_atom_site.auth_comp_id          CU 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              106 
_model_server_stats.parse_time_ms           114 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           480 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#