data_2DY5 # _model_server_result.job_id 8pvNwIX5QZlVLHAvU4FPdA _model_server_result.datetime_utc '2024-11-15 02:57:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dy5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2DY5 # _exptl.entry_id 2DY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.761 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-({2-[2-(4-CHLOROPHENYL)ETHYL]-1,3-DIOXOLAN-2-YL}METHYL)-1H-IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DY5 _cell.length_a 66.78 _cell.length_b 66.78 _cell.length_c 121.39 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 C FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 C FE HEM . A HEM 300 1_555 D N2 224 . A 224 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? # _chem_comp.formula 'C15 H17 Cl N2 O2' _chem_comp.formula_weight 292.761 _chem_comp.id 224 _chem_comp.mon_nstd_flag . _chem_comp.name 1-({2-[2-(4-CHLOROPHENYL)ETHYL]-1,3-DIOXOLAN-2-YL}METHYL)-1H-IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-[2-(4-CHLOROPHENYL)ETHYL]-2-[(1H-IMIDAZOL-1-YL)METHYL]-1,3-DIOXOLANE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 224 sing 1 n y C1 C2 224 doub 2 n y C1 H1 224 sing 3 n n N1 C3 224 sing 4 n y N1 C4 224 sing 5 n n C2 N2 224 sing 6 n y C2 H2 224 sing 7 n n N2 C3 224 doub 8 n y C3 H3 224 sing 9 n n C4 C5 224 sing 10 n n C4 H41 224 sing 11 n n C4 H42 224 sing 12 n n C5 O2 224 sing 13 n n C5 C8 224 sing 14 n n C5 O1 224 sing 15 n n O1 C7 224 sing 16 n n O2 C6 224 sing 17 n n C6 C7 224 sing 18 n n C6 H61 224 sing 19 n n C6 H62 224 sing 20 n n C7 H71 224 sing 21 n n C7 H72 224 sing 22 n n C8 C9 224 sing 23 n n C8 H81 224 sing 24 n n C8 H82 224 sing 25 n n C9 C10 224 sing 26 n n C9 H91 224 sing 27 n n C9 H92 224 sing 28 n n C10 C11 224 doub 29 n y C10 C12 224 sing 30 n y C11 C14 224 sing 31 n y C11 H11 224 sing 32 n n C12 C13 224 doub 33 n y C12 H12 224 sing 34 n n C13 C15 224 sing 35 n y C13 H13 224 sing 36 n n C14 C15 224 doub 37 n y C14 H14 224 sing 38 n n C15 CL 224 sing 39 n n # _atom_sites.entry_id 2DY5 _atom_sites.fract_transf_matrix[1][1] 0.014975 _atom_sites.fract_transf_matrix[1][2] 0.008646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 302 302 CL CL . C 3 HEM A 1 300 300 HEM HEM . D 4 224 A 1 301 301 224 224 . E 5 HOH A 1 303 303 HOH HOH . E 5 HOH A 2 304 304 HOH HOH . E 5 HOH A 3 305 305 HOH HOH . E 5 HOH A 4 306 306 HOH HOH . E 5 HOH A 5 307 307 HOH HOH . E 5 HOH A 6 308 308 HOH HOH . E 5 HOH A 7 309 309 HOH HOH . E 5 HOH A 8 310 310 HOH HOH . E 5 HOH A 9 311 311 HOH HOH . E 5 HOH A 10 312 312 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 224 . . . D 4 28.682 -26.85 30.568 1 56.22 ? C1 224 301 A 1 HETATM 2 N N1 224 . . . D 4 28.496 -26.16 29.366 1 57.66 ? N1 224 301 A 1 HETATM 3 C C2 224 . . . D 4 29.381 -27.975 30.381 1 55.38 ? C2 224 301 A 1 HETATM 4 N N2 224 . . . D 4 29.667 -28.033 29.021 1 52.33 ? N2 224 301 A 1 HETATM 5 C C3 224 . . . D 4 29.12 -26.913 28.381 1 56.5 ? C3 224 301 A 1 HETATM 6 C C4 224 . . . D 4 27.812 -24.93 29.188 1 62.41 ? C4 224 301 A 1 HETATM 7 C C5 224 . . . D 4 28.696 -23.681 29.461 1 66.57 ? C5 224 301 A 1 HETATM 8 O O1 224 . . . D 4 29.239 -23.773 30.804 1 66.59 ? O1 224 301 A 1 HETATM 9 O O2 224 . . . D 4 29.847 -23.684 28.578 1 67.21 ? O2 224 301 A 1 HETATM 10 C C6 224 . . . D 4 31.005 -23.781 29.377 1 67.29 ? C6 224 301 A 1 HETATM 11 C C7 224 . . . D 4 30.652 -23.834 30.683 1 68.28 ? C7 224 301 A 1 HETATM 12 C C8 224 . . . D 4 27.845 -22.406 29.254 1 68.32 ? C8 224 301 A 1 HETATM 13 C C9 224 . . . D 4 28.629 -21.139 29.533 1 72.13 ? C9 224 301 A 1 HETATM 14 C C10 224 . . . D 4 29.625 -20.428 30.375 1 74.19 ? C10 224 301 A 1 HETATM 15 C C11 224 . . . D 4 30.909 -20.097 29.859 1 74.23 ? C11 224 301 A 1 HETATM 16 C C12 224 . . . D 4 29.301 -20.081 31.717 1 75.36 ? C12 224 301 A 1 HETATM 17 C C13 224 . . . D 4 30.236 -19.411 32.541 1 75.19 ? C13 224 301 A 1 HETATM 18 C C14 224 . . . D 4 31.852 -19.426 30.675 1 75.87 ? C14 224 301 A 1 HETATM 19 C C15 224 . . . D 4 31.509 -19.085 32.018 1 75.7 ? C15 224 301 A 1 HETATM 20 CL CL 224 . . . D 4 32.633 -18.279 32.999 1 77.32 ? CL 224 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #