data_2DY9 # _model_server_result.job_id DKJwSoJMkJqR6ysdKEknoA _model_server_result.datetime_utc '2024-10-19 01:39:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 2DY9 # _exptl.entry_id 2DY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DY9 _cell.length_a 69.835 _cell.length_b 69.835 _cell.length_c 106.897 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 69.835 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 34.9175 60.478884 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O1A ADP . A ADP 501 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 F O1B ADP . A ADP 501 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc3 C MG MG . A MG 601 1_555 I O HOH . A HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc4 C MG MG . A MG 601 1_555 I O HOH . A HOH 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc5 C MG MG . A MG 601 1_555 I O HOH . A HOH 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DY9 _atom_sites.fract_transf_matrix[1][1] 0.014319 _atom_sites.fract_transf_matrix[1][2] 0.008267 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 601 601 MG MG . D 3 CL A 1 701 701 CL CL . E 3 CL A 1 702 702 CL CL . F 4 ADP A 1 501 501 ADP ADP . G 3 CL B 1 703 703 CL CL . H 3 CL B 1 704 704 CL CL . I 5 HOH A 1 703 4 HOH TIP . I 5 HOH A 2 704 8 HOH TIP . I 5 HOH A 3 705 9 HOH TIP . I 5 HOH A 4 706 11 HOH TIP . I 5 HOH A 5 707 12 HOH TIP . I 5 HOH A 6 708 13 HOH TIP . I 5 HOH A 7 709 15 HOH TIP . I 5 HOH A 8 710 17 HOH TIP . I 5 HOH A 9 711 18 HOH TIP . I 5 HOH A 10 712 19 HOH TIP . I 5 HOH A 11 713 20 HOH TIP . I 5 HOH A 12 714 23 HOH TIP . I 5 HOH A 13 715 24 HOH TIP . I 5 HOH A 14 716 26 HOH TIP . I 5 HOH A 15 717 27 HOH TIP . I 5 HOH A 16 718 28 HOH TIP . I 5 HOH A 17 719 30 HOH TIP . I 5 HOH A 18 720 32 HOH TIP . I 5 HOH A 19 721 34 HOH TIP . I 5 HOH A 20 722 37 HOH TIP . I 5 HOH A 21 723 38 HOH TIP . I 5 HOH A 22 724 40 HOH TIP . I 5 HOH A 23 725 42 HOH TIP . I 5 HOH A 24 726 43 HOH TIP . I 5 HOH A 25 727 47 HOH TIP . I 5 HOH A 26 728 48 HOH TIP . I 5 HOH A 27 729 51 HOH TIP . I 5 HOH A 28 730 52 HOH TIP . I 5 HOH A 29 731 57 HOH TIP . I 5 HOH A 30 732 59 HOH TIP . I 5 HOH A 31 733 60 HOH TIP . I 5 HOH A 32 734 63 HOH TIP . I 5 HOH A 33 735 64 HOH TIP . I 5 HOH A 34 736 66 HOH TIP . I 5 HOH A 35 737 67 HOH TIP . I 5 HOH A 36 738 69 HOH TIP . I 5 HOH A 37 739 71 HOH TIP . I 5 HOH A 38 740 72 HOH TIP . I 5 HOH A 39 741 74 HOH TIP . I 5 HOH A 40 742 75 HOH TIP . I 5 HOH A 41 743 78 HOH TIP . I 5 HOH A 42 744 79 HOH TIP . I 5 HOH A 43 745 80 HOH TIP . I 5 HOH A 44 746 83 HOH TIP . I 5 HOH A 45 747 84 HOH TIP . I 5 HOH A 46 748 85 HOH TIP . I 5 HOH A 47 749 87 HOH TIP . I 5 HOH A 48 750 89 HOH TIP . I 5 HOH A 49 751 90 HOH TIP . I 5 HOH A 50 752 91 HOH TIP . I 5 HOH A 51 753 92 HOH TIP . I 5 HOH A 52 754 94 HOH TIP . I 5 HOH A 53 755 95 HOH TIP . I 5 HOH A 54 756 96 HOH TIP . I 5 HOH A 55 757 99 HOH TIP . I 5 HOH A 56 758 100 HOH TIP . I 5 HOH A 57 759 103 HOH TIP . I 5 HOH A 58 760 106 HOH TIP . I 5 HOH A 59 761 108 HOH TIP . I 5 HOH A 60 762 111 HOH TIP . I 5 HOH A 61 763 113 HOH TIP . I 5 HOH A 62 764 114 HOH TIP . I 5 HOH A 63 765 115 HOH TIP . I 5 HOH A 64 766 117 HOH TIP . I 5 HOH A 65 767 119 HOH TIP . I 5 HOH A 66 768 120 HOH TIP . I 5 HOH A 67 769 121 HOH TIP . I 5 HOH A 68 770 123 HOH TIP . I 5 HOH A 69 771 124 HOH TIP . I 5 HOH A 70 772 126 HOH TIP . I 5 HOH A 71 773 131 HOH TIP . I 5 HOH A 72 774 132 HOH TIP . I 5 HOH A 73 775 133 HOH TIP . I 5 HOH A 74 776 134 HOH TIP . I 5 HOH A 75 777 135 HOH TIP . I 5 HOH A 76 778 136 HOH TIP . I 5 HOH A 77 779 138 HOH TIP . I 5 HOH A 78 780 142 HOH TIP . I 5 HOH A 79 781 143 HOH TIP . I 5 HOH A 80 782 147 HOH TIP . I 5 HOH A 81 783 148 HOH TIP . I 5 HOH A 82 784 150 HOH TIP . I 5 HOH A 83 785 151 HOH TIP . I 5 HOH A 84 786 154 HOH TIP . I 5 HOH A 85 787 155 HOH TIP . I 5 HOH A 86 788 157 HOH TIP . I 5 HOH A 87 789 158 HOH TIP . I 5 HOH A 88 790 162 HOH TIP . I 5 HOH A 89 791 165 HOH TIP . I 5 HOH A 90 792 166 HOH TIP . I 5 HOH A 91 793 169 HOH TIP . I 5 HOH A 92 794 170 HOH TIP . I 5 HOH A 93 795 171 HOH TIP . I 5 HOH A 94 796 173 HOH TIP . I 5 HOH A 95 797 175 HOH TIP . I 5 HOH A 96 798 178 HOH TIP . I 5 HOH A 97 799 181 HOH TIP . I 5 HOH A 98 800 182 HOH TIP . I 5 HOH A 99 801 186 HOH TIP . I 5 HOH A 100 802 189 HOH TIP . I 5 HOH A 101 803 190 HOH TIP . I 5 HOH A 102 804 192 HOH TIP . I 5 HOH A 103 805 193 HOH TIP . I 5 HOH A 104 806 195 HOH TIP . I 5 HOH A 105 807 196 HOH TIP . I 5 HOH A 106 808 198 HOH TIP . I 5 HOH A 107 809 199 HOH TIP . I 5 HOH A 108 810 200 HOH TIP . I 5 HOH A 109 811 201 HOH TIP . I 5 HOH A 110 812 203 HOH TIP . I 5 HOH A 111 813 204 HOH TIP . I 5 HOH A 112 814 205 HOH TIP . I 5 HOH A 113 815 207 HOH TIP . I 5 HOH A 114 816 209 HOH TIP . I 5 HOH A 115 817 212 HOH TIP . I 5 HOH A 116 818 214 HOH TIP . I 5 HOH A 117 819 221 HOH TIP . J 5 HOH B 1 705 1 HOH TIP . J 5 HOH B 2 706 2 HOH TIP . J 5 HOH B 3 707 3 HOH TIP . J 5 HOH B 4 708 5 HOH TIP . J 5 HOH B 5 709 6 HOH TIP . J 5 HOH B 6 710 7 HOH TIP . J 5 HOH B 7 711 10 HOH TIP . J 5 HOH B 8 712 14 HOH TIP . J 5 HOH B 9 713 16 HOH TIP . J 5 HOH B 10 714 21 HOH TIP . J 5 HOH B 11 715 22 HOH TIP . J 5 HOH B 12 716 25 HOH TIP . J 5 HOH B 13 717 29 HOH TIP . J 5 HOH B 14 718 31 HOH TIP . J 5 HOH B 15 719 33 HOH TIP . J 5 HOH B 16 720 35 HOH TIP . J 5 HOH B 17 721 36 HOH TIP . J 5 HOH B 18 722 39 HOH TIP . J 5 HOH B 19 723 41 HOH TIP . J 5 HOH B 20 724 44 HOH TIP . J 5 HOH B 21 725 45 HOH TIP . J 5 HOH B 22 726 46 HOH TIP . J 5 HOH B 23 727 49 HOH TIP . J 5 HOH B 24 728 50 HOH TIP . J 5 HOH B 25 729 53 HOH TIP . J 5 HOH B 26 730 54 HOH TIP . J 5 HOH B 27 731 55 HOH TIP . J 5 HOH B 28 732 56 HOH TIP . J 5 HOH B 29 733 58 HOH TIP . J 5 HOH B 30 734 61 HOH TIP . J 5 HOH B 31 735 62 HOH TIP . J 5 HOH B 32 736 65 HOH TIP . J 5 HOH B 33 737 68 HOH TIP . J 5 HOH B 34 738 70 HOH TIP . J 5 HOH B 35 739 73 HOH TIP . J 5 HOH B 36 740 76 HOH TIP . J 5 HOH B 37 741 77 HOH TIP . J 5 HOH B 38 742 81 HOH TIP . J 5 HOH B 39 743 82 HOH TIP . J 5 HOH B 40 744 86 HOH TIP . J 5 HOH B 41 745 88 HOH TIP . J 5 HOH B 42 746 93 HOH TIP . J 5 HOH B 43 747 97 HOH TIP . J 5 HOH B 44 748 98 HOH TIP . J 5 HOH B 45 749 101 HOH TIP . J 5 HOH B 46 750 102 HOH TIP . J 5 HOH B 47 751 104 HOH TIP . J 5 HOH B 48 752 105 HOH TIP . J 5 HOH B 49 753 107 HOH TIP . J 5 HOH B 50 754 109 HOH TIP . J 5 HOH B 51 755 110 HOH TIP . J 5 HOH B 52 756 112 HOH TIP . J 5 HOH B 53 757 116 HOH TIP . J 5 HOH B 54 758 118 HOH TIP . J 5 HOH B 55 759 122 HOH TIP . J 5 HOH B 56 760 125 HOH TIP . J 5 HOH B 57 761 127 HOH TIP . J 5 HOH B 58 762 128 HOH TIP . J 5 HOH B 59 763 129 HOH TIP . J 5 HOH B 60 764 130 HOH TIP . J 5 HOH B 61 765 137 HOH TIP . J 5 HOH B 62 766 139 HOH TIP . J 5 HOH B 63 767 140 HOH TIP . J 5 HOH B 64 768 141 HOH TIP . J 5 HOH B 65 769 144 HOH TIP . J 5 HOH B 66 770 145 HOH TIP . J 5 HOH B 67 771 146 HOH TIP . J 5 HOH B 68 772 149 HOH TIP . J 5 HOH B 69 773 152 HOH TIP . J 5 HOH B 70 774 153 HOH TIP . J 5 HOH B 71 775 156 HOH TIP . J 5 HOH B 72 776 159 HOH TIP . J 5 HOH B 73 777 160 HOH TIP . J 5 HOH B 74 778 161 HOH TIP . J 5 HOH B 75 779 163 HOH TIP . J 5 HOH B 76 780 164 HOH TIP . J 5 HOH B 77 781 167 HOH TIP . J 5 HOH B 78 782 168 HOH TIP . J 5 HOH B 79 783 172 HOH TIP . J 5 HOH B 80 784 174 HOH TIP . J 5 HOH B 81 785 176 HOH TIP . J 5 HOH B 82 786 177 HOH TIP . J 5 HOH B 83 787 179 HOH TIP . J 5 HOH B 84 788 180 HOH TIP . J 5 HOH B 85 789 183 HOH TIP . J 5 HOH B 86 790 184 HOH TIP . J 5 HOH B 87 791 185 HOH TIP . J 5 HOH B 88 792 187 HOH TIP . J 5 HOH B 89 793 188 HOH TIP . J 5 HOH B 90 794 191 HOH TIP . J 5 HOH B 91 795 194 HOH TIP . J 5 HOH B 92 796 197 HOH TIP . J 5 HOH B 93 797 202 HOH TIP . J 5 HOH B 94 798 206 HOH TIP . J 5 HOH B 95 799 208 HOH TIP . J 5 HOH B 96 800 210 HOH TIP . J 5 HOH B 97 801 211 HOH TIP . J 5 HOH B 98 802 213 HOH TIP . J 5 HOH B 99 803 215 HOH TIP . J 5 HOH B 100 804 216 HOH TIP . J 5 HOH B 101 805 217 HOH TIP . J 5 HOH B 102 806 218 HOH TIP . J 5 HOH B 103 807 219 HOH TIP . J 5 HOH B 104 808 220 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 29.703 _atom_site.Cartn_y 25.001 _atom_site.Cartn_z 44.509 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #