data_2E20 # _model_server_result.job_id 0DuYKyXnfSqUcgdpj1sAHQ _model_server_result.datetime_utc '2024-11-02 17:34:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":403}' # _entry.id 2E20 # _exptl.entry_id 2E20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 836.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E20 _cell.length_a 110.56 _cell.length_b 110.56 _cell.length_c 66.612 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 66.612 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 N10 O19 P4' _chem_comp.formula_weight 836.387 _chem_comp.id B4P _chem_comp.mon_nstd_flag . _chem_comp.name "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A B4P doub 70 n n PA O2A B4P sing 71 n n PA O3A B4P sing 72 n n PA O5E B4P sing 73 n n O2A HOA2 B4P sing 74 n n O3A PB B4P sing 75 n n PB O1B B4P doub 76 n n PB O2B B4P sing 77 n n PB O3B B4P sing 78 n n O2B HOB2 B4P sing 79 n n O3B PG B4P sing 80 n n PG O1G B4P doub 81 n n PG O2G B4P sing 82 n n PG O3G B4P sing 83 n n O2G HOG2 B4P sing 84 n n O3G PD B4P sing 85 n n PD O1D B4P doub 86 n n PD O2D B4P sing 87 n n PD O5F B4P sing 88 n n O2D HOD2 B4P sing 89 n n O5E C5E B4P sing 90 n n C5E C4E B4P sing 91 n n C5E H51A B4P sing 92 n n C5E H52A B4P sing 93 n n C4E O4E B4P sing 94 n n C4E C3E B4P sing 95 n n C4E H4E B4P sing 96 n n O4E C1E B4P sing 97 n n C3E O3E B4P sing 98 n n C3E C2E B4P sing 99 n n C3E H3E B4P sing 100 n n O3E HO3A B4P sing 101 n n C2E O2E B4P sing 102 n n C2E C1E B4P sing 103 n n C2E H2E B4P sing 104 n n O2E HO2A B4P sing 105 n n C1E N9A B4P sing 106 n n C1E H1E B4P sing 107 n n N9A C8A B4P sing 108 n y N9A C4A B4P sing 109 n y C8A N7A B4P doub 110 n y C8A H8A B4P sing 111 n n N7A C5A B4P sing 112 n y C5A C6A B4P sing 113 n y C5A C4A B4P doub 114 n y C6A N6A B4P sing 115 n n C6A N1A B4P doub 116 n y N6A H61A B4P sing 117 n n N6A H62A B4P sing 118 n n N1A C2A B4P sing 119 n y C2A N3A B4P doub 120 n y C2A H2A B4P sing 121 n n N3A C4A B4P sing 122 n y O5F C5F B4P sing 123 n n C5F C4F B4P sing 124 n n C5F H51B B4P sing 125 n n C5F H52B B4P sing 126 n n C4F O4F B4P sing 127 n n C4F C3F B4P sing 128 n n C4F H4F B4P sing 129 n n O4F C1F B4P sing 130 n n C3F O3F B4P sing 131 n n C3F C2F B4P sing 132 n n C3F H3F B4P sing 133 n n O3F HO3B B4P sing 134 n n C2F O2F B4P sing 135 n n C2F C1F B4P sing 136 n n C2F H2F B4P sing 137 n n O2F HO2B B4P sing 138 n n C1F N9B B4P sing 139 n n C1F H1F B4P sing 140 n n N9B C8B B4P sing 141 n y N9B C4B B4P sing 142 n y C8B N7B B4P doub 143 n y C8B H8B B4P sing 144 n n N7B C5B B4P sing 145 n y C5B C6B B4P sing 146 n y C5B C4B B4P doub 147 n y C6B N6B B4P sing 148 n n C6B N1B B4P doub 149 n y N6B H61B B4P sing 150 n n N6B H62B B4P sing 151 n n N1B C2B B4P sing 152 n y C2B N3B B4P doub 153 n y C2B H2B B4P sing 154 n n N3B C4B B4P sing 155 n y # _atom_sites.entry_id 2E20 _atom_sites.fract_transf_matrix[1][1] 0.009045 _atom_sites.fract_transf_matrix[1][2] 0.005222 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B4P A 1 403 400 B4P B4P . C 3 EDO A 1 404 401 EDO EDO . D 4 HOH A 1 405 1 HOH HOH . D 4 HOH A 2 406 2 HOH HOH . D 4 HOH A 3 407 3 HOH HOH . D 4 HOH A 4 408 4 HOH HOH . D 4 HOH A 5 409 5 HOH HOH . D 4 HOH A 6 410 6 HOH HOH . D 4 HOH A 7 411 7 HOH HOH . D 4 HOH A 8 412 8 HOH HOH . D 4 HOH A 9 413 9 HOH HOH . D 4 HOH A 10 414 10 HOH HOH . D 4 HOH A 11 415 11 HOH HOH . D 4 HOH A 12 416 12 HOH HOH . D 4 HOH A 13 417 13 HOH HOH . D 4 HOH A 14 418 14 HOH HOH . D 4 HOH A 15 419 15 HOH HOH . D 4 HOH A 16 420 16 HOH HOH . D 4 HOH A 17 421 17 HOH HOH . D 4 HOH A 18 422 18 HOH HOH . D 4 HOH A 19 423 19 HOH HOH . D 4 HOH A 20 424 20 HOH HOH . D 4 HOH A 21 425 21 HOH HOH . D 4 HOH A 22 426 22 HOH HOH . D 4 HOH A 23 427 23 HOH HOH . D 4 HOH A 24 428 24 HOH HOH . D 4 HOH A 25 429 25 HOH HOH . D 4 HOH A 26 430 26 HOH HOH . D 4 HOH A 27 431 27 HOH HOH . D 4 HOH A 28 432 28 HOH HOH . D 4 HOH A 29 433 29 HOH HOH . D 4 HOH A 30 434 30 HOH HOH . D 4 HOH A 31 435 31 HOH HOH . D 4 HOH A 32 436 32 HOH HOH . D 4 HOH A 33 437 33 HOH HOH . D 4 HOH A 34 438 34 HOH HOH . D 4 HOH A 35 439 35 HOH HOH . D 4 HOH A 36 440 36 HOH HOH . D 4 HOH A 37 441 37 HOH HOH . D 4 HOH A 38 442 38 HOH HOH . D 4 HOH A 39 443 39 HOH HOH . D 4 HOH A 40 444 40 HOH HOH . D 4 HOH A 41 445 41 HOH HOH . D 4 HOH A 42 446 42 HOH HOH . D 4 HOH A 43 447 43 HOH HOH . D 4 HOH A 44 448 44 HOH HOH . D 4 HOH A 45 449 45 HOH HOH . D 4 HOH A 46 450 46 HOH HOH . D 4 HOH A 47 451 47 HOH HOH . D 4 HOH A 48 452 48 HOH HOH . D 4 HOH A 49 453 49 HOH HOH . D 4 HOH A 50 454 50 HOH HOH . D 4 HOH A 51 455 51 HOH HOH . D 4 HOH A 52 456 52 HOH HOH . D 4 HOH A 53 457 53 HOH HOH . D 4 HOH A 54 458 54 HOH HOH . D 4 HOH A 55 459 55 HOH HOH . D 4 HOH A 56 460 56 HOH HOH . D 4 HOH A 57 461 57 HOH HOH . D 4 HOH A 58 462 58 HOH HOH . D 4 HOH A 59 463 59 HOH HOH . D 4 HOH A 60 464 60 HOH HOH . D 4 HOH A 61 465 61 HOH HOH . D 4 HOH A 62 466 62 HOH HOH . D 4 HOH A 63 467 63 HOH HOH . D 4 HOH A 64 468 64 HOH HOH . D 4 HOH A 65 469 65 HOH HOH . D 4 HOH A 66 470 66 HOH HOH . D 4 HOH A 67 471 67 HOH HOH . D 4 HOH A 68 472 68 HOH HOH . D 4 HOH A 69 473 69 HOH HOH . D 4 HOH A 70 474 70 HOH HOH . D 4 HOH A 71 475 71 HOH HOH . D 4 HOH A 72 476 72 HOH HOH . D 4 HOH A 73 477 73 HOH HOH . D 4 HOH A 74 478 74 HOH HOH . D 4 HOH A 75 479 75 HOH HOH . D 4 HOH A 76 480 76 HOH HOH . D 4 HOH A 77 481 77 HOH HOH . D 4 HOH A 78 482 78 HOH HOH . D 4 HOH A 79 483 79 HOH HOH . D 4 HOH A 80 484 80 HOH HOH . D 4 HOH A 81 485 81 HOH HOH . D 4 HOH A 82 486 82 HOH HOH . D 4 HOH A 83 487 83 HOH HOH . D 4 HOH A 84 488 84 HOH HOH . D 4 HOH A 85 489 85 HOH HOH . D 4 HOH A 86 490 86 HOH HOH . D 4 HOH A 87 491 87 HOH HOH . D 4 HOH A 88 492 88 HOH HOH . D 4 HOH A 89 493 89 HOH HOH . D 4 HOH A 90 494 90 HOH HOH . D 4 HOH A 91 495 91 HOH HOH . D 4 HOH A 92 496 92 HOH HOH . D 4 HOH A 93 497 93 HOH HOH . D 4 HOH A 94 498 94 HOH HOH . D 4 HOH A 95 499 95 HOH HOH . D 4 HOH A 96 500 96 HOH HOH . D 4 HOH A 97 501 97 HOH HOH . D 4 HOH A 98 502 98 HOH HOH . D 4 HOH A 99 503 99 HOH HOH . D 4 HOH A 100 504 100 HOH HOH . D 4 HOH A 101 505 101 HOH HOH . D 4 HOH A 102 506 102 HOH HOH . D 4 HOH A 103 507 103 HOH HOH . D 4 HOH A 104 508 104 HOH HOH . D 4 HOH A 105 509 105 HOH HOH . D 4 HOH A 106 510 106 HOH HOH . D 4 HOH A 107 511 107 HOH HOH . D 4 HOH A 108 512 108 HOH HOH . D 4 HOH A 109 513 109 HOH HOH . D 4 HOH A 110 514 110 HOH HOH . D 4 HOH A 111 515 111 HOH HOH . D 4 HOH A 112 516 112 HOH HOH . D 4 HOH A 113 517 113 HOH HOH . D 4 HOH A 114 518 114 HOH HOH . D 4 HOH A 115 519 115 HOH HOH . D 4 HOH A 116 520 116 HOH HOH . D 4 HOH A 117 521 117 HOH HOH . D 4 HOH A 118 522 118 HOH HOH . D 4 HOH A 119 523 119 HOH HOH . D 4 HOH A 120 524 120 HOH HOH . D 4 HOH A 121 525 121 HOH HOH . D 4 HOH A 122 526 122 HOH HOH . D 4 HOH A 123 527 123 HOH HOH . D 4 HOH A 124 528 124 HOH HOH . D 4 HOH A 125 529 125 HOH HOH . D 4 HOH A 126 530 126 HOH HOH . D 4 HOH A 127 531 127 HOH HOH . D 4 HOH A 128 532 128 HOH HOH . D 4 HOH A 129 533 129 HOH HOH . D 4 HOH A 130 534 130 HOH HOH . D 4 HOH A 131 535 131 HOH HOH . D 4 HOH A 132 536 132 HOH HOH . D 4 HOH A 133 537 133 HOH HOH . D 4 HOH A 134 538 134 HOH HOH . D 4 HOH A 135 539 135 HOH HOH . D 4 HOH A 136 540 136 HOH HOH . D 4 HOH A 137 541 137 HOH HOH . D 4 HOH A 138 542 138 HOH HOH . D 4 HOH A 139 543 139 HOH HOH . D 4 HOH A 140 544 140 HOH HOH . D 4 HOH A 141 545 141 HOH HOH . D 4 HOH A 142 546 142 HOH HOH . D 4 HOH A 143 547 143 HOH HOH . D 4 HOH A 144 548 144 HOH HOH . D 4 HOH A 145 549 145 HOH HOH . D 4 HOH A 146 550 146 HOH HOH . D 4 HOH A 147 551 147 HOH HOH . D 4 HOH A 148 552 148 HOH HOH . D 4 HOH A 149 553 149 HOH HOH . D 4 HOH A 150 554 150 HOH HOH . D 4 HOH A 151 555 151 HOH HOH . D 4 HOH A 152 556 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA B4P . . . B 2 16.148 42.966 55.021 1 50.77 ? PA B4P 403 A 1 HETATM 2 O O1A B4P . . . B 2 16.013 44.182 54.129 1 49.98 ? O1A B4P 403 A 1 HETATM 3 O O2A B4P . . . B 2 15.858 43.121 56.503 1 51.99 ? O2A B4P 403 A 1 HETATM 4 O O3A B4P . . . B 2 15.291 41.729 54.424 1 51.39 ? O3A B4P 403 A 1 HETATM 5 P PB B4P . . . B 2 13.664 41.681 54.367 1 52.26 ? PB B4P 403 A 1 HETATM 6 O O1B B4P . . . B 2 13.13 42.399 55.583 1 52.97 ? O1B B4P 403 A 1 HETATM 7 O O2B B4P . . . B 2 13.231 40.253 54.113 1 50.72 ? O2B B4P 403 A 1 HETATM 8 O O3B B4P . . . B 2 13.295 42.637 53.106 1 51.91 ? O3B B4P 403 A 1 HETATM 9 P PG B4P . . . B 2 13.451 42.245 51.546 1 49.68 ? PG B4P 403 A 1 HETATM 10 O O1G B4P . . . B 2 14.738 41.469 51.4 1 50.17 ? O1G B4P 403 A 1 HETATM 11 O O2G B4P . . . B 2 13.21 43.512 50.783 1 50.59 ? O2G B4P 403 A 1 HETATM 12 O O3G B4P . . . B 2 12.202 41.259 51.305 1 50.53 ? O3G B4P 403 A 1 HETATM 13 P PD B4P . . . B 2 12.065 40.27 50.045 1 51.6 ? PD B4P 403 A 1 HETATM 14 O O1D B4P . . . B 2 12.33 38.838 50.459 1 52.97 ? O1D B4P 403 A 1 HETATM 15 O O2D B4P . . . B 2 12.804 40.848 48.866 1 52.01 ? O2D B4P 403 A 1 HETATM 16 O O5E B4P . . . B 2 17.652 42.411 54.898 1 51.16 ? O5E B4P 403 A 1 HETATM 17 C C5E B4P . . . B 2 18.027 41.211 55.562 1 51.7 ? C5E B4P 403 A 1 HETATM 18 C C4E B4P . . . B 2 19.518 41.019 55.361 1 52.72 ? C4E B4P 403 A 1 HETATM 19 O O4E B4P . . . B 2 20.185 42.192 55.846 1 53.67 ? O4E B4P 403 A 1 HETATM 20 C C3E B4P . . . B 2 20.113 39.822 56.104 1 53.06 ? C3E B4P 403 A 1 HETATM 21 O O3E B4P . . . B 2 21.043 39.116 55.278 1 53.62 ? O3E B4P 403 A 1 HETATM 22 C C2E B4P . . . B 2 20.896 40.438 57.226 1 53.16 ? C2E B4P 403 A 1 HETATM 23 O O2E B4P . . . B 2 22.047 39.672 57.589 1 54.9 ? O2E B4P 403 A 1 HETATM 24 C C1E B4P . . . B 2 21.314 41.753 56.606 1 52.42 ? C1E B4P 403 A 1 HETATM 25 N N9A B4P . . . B 2 21.754 42.644 57.693 1 51.97 ? N9A B4P 403 A 1 HETATM 26 C C8A B4P . . . B 2 20.996 43.237 58.633 1 51.74 ? C8A B4P 403 A 1 HETATM 27 N N7A B4P . . . B 2 21.783 43.96 59.47 1 51.52 ? N7A B4P 403 A 1 HETATM 28 C C5A B4P . . . B 2 23.059 43.819 59.065 1 51.66 ? C5A B4P 403 A 1 HETATM 29 C C6A B4P . . . B 2 24.396 44.295 59.501 1 51.97 ? C6A B4P 403 A 1 HETATM 30 N N6A B4P . . . B 2 24.518 45.116 60.574 1 51.73 ? N6A B4P 403 A 1 HETATM 31 N N1A B4P . . . B 2 25.477 43.897 58.778 1 51.91 ? N1A B4P 403 A 1 HETATM 32 C C2A B4P . . . B 2 25.367 43.084 57.707 1 51.62 ? C2A B4P 403 A 1 HETATM 33 N N3A B4P . . . B 2 24.186 42.617 57.268 1 51.5 ? N3A B4P 403 A 1 HETATM 34 C C4A B4P . . . B 2 23.03 42.945 57.89 1 51.68 ? C4A B4P 403 A 1 HETATM 35 O O5F B4P . . . B 2 10.485 40.384 49.764 1 53.35 ? O5F B4P 403 A 1 HETATM 36 C C5F B4P . . . B 2 9.871 41.629 49.428 1 53.39 ? C5F B4P 403 A 1 HETATM 37 C C4F B4P . . . B 2 8.462 41.366 48.916 1 54.22 ? C4F B4P 403 A 1 HETATM 38 O O4F B4P . . . B 2 8.477 40.452 47.814 1 54.53 ? O4F B4P 403 A 1 HETATM 39 C C3F B4P . . . B 2 7.585 40.742 49.994 1 55.09 ? C3F B4P 403 A 1 HETATM 40 O O3F B4P . . . B 2 6.407 41.533 50.175 1 55.1 ? O3F B4P 403 A 1 HETATM 41 C C2F B4P . . . B 2 7.264 39.343 49.487 1 55.64 ? C2F B4P 403 A 1 HETATM 42 O O2F B4P . . . B 2 5.949 38.896 49.857 1 56.44 ? O2F B4P 403 A 1 HETATM 43 C C1F B4P . . . B 2 7.415 39.507 47.978 1 55.54 ? C1F B4P 403 A 1 HETATM 44 N N9B B4P . . . B 2 7.634 38.23 47.24 1 55.83 ? N9B B4P 403 A 1 HETATM 45 C C8B B4P . . . B 2 8.264 37.117 47.683 1 55.73 ? C8B B4P 403 A 1 HETATM 46 N N7B B4P . . . B 2 8.253 36.154 46.727 1 55.82 ? N7B B4P 403 A 1 HETATM 47 C C5B B4P . . . B 2 7.604 36.641 45.644 1 55.93 ? C5B B4P 403 A 1 HETATM 48 C C6B B4P . . . B 2 7.232 36.148 44.287 1 55.67 ? C6B B4P 403 A 1 HETATM 49 N N6B B4P . . . B 2 7.569 34.901 43.891 1 55.85 ? N6B B4P 403 A 1 HETATM 50 N N1B B4P . . . B 2 6.558 36.979 43.456 1 55.29 ? N1B B4P 403 A 1 HETATM 51 C C2B B4P . . . B 2 6.215 38.224 43.842 1 55.46 ? C2B B4P 403 A 1 HETATM 52 N N3B B4P . . . B 2 6.522 38.734 45.054 1 55.54 ? N3B B4P 403 A 1 HETATM 53 C C4B B4P . . . B 2 7.2 38.012 45.987 1 55.73 ? C4B B4P 403 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #