data_2E25 # _model_server_result.job_id evlKChDzP5tknwXYKfQ9bQ _model_server_result.datetime_utc '2025-03-06 10:27:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e25 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":410}' # _entry.id 2E25 # _exptl.entry_id 2E25 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-FLUORO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2E25 _cell.length_a 72.61 _cell.length_b 72.61 _cell.length_c 176.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E25 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 101 A ALA 101 1_555 A N KCX 102 A KCX 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C KCX 102 A KCX 102 1_555 A N LEU 103 A LEU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A NE2 HIS 16 A HIS 16 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc2 A NE2 HIS 18 A HIS 18 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 A OQ1 KCX 102 A KCX 102 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc4 A OQ2 KCX 102 A KCX 102 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 A ND1 HIS 139 A HIS 139 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 A NE2 HIS 177 A HIS 177 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc7 A OD1 ASP 250 A ASP 250 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc8 B ZN ZN . A ZN 400 1_555 D O6 FOT . A FOT 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc9 B ZN ZN . A ZN 400 1_555 E O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc10 C ZN ZN . A ZN 401 1_555 E O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C5 H3 F N2 O4' _chem_comp.formula_weight 174.087 _chem_comp.id FOT _chem_comp.mon_nstd_flag . _chem_comp.name '5-FLUORO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-FLUOROOROTIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O2 FOT doub 83 n n C2 N3 FOT sing 84 n n C2 N1 FOT sing 85 n n C6 C5 FOT sing 86 n n C6 N1 FOT sing 87 n n C6 O6 FOT doub 88 n n C5 F5 FOT sing 89 n n C5 C4 FOT doub 90 n n N3 C4 FOT sing 91 n n N3 HN3 FOT sing 92 n n N1 HN1 FOT sing 93 n n C4 C41 FOT sing 94 n n C41 O42 FOT doub 95 n n C41 O41 FOT sing 96 n n O41 HO41 FOT sing 97 n n # _atom_sites.entry_id 2E25 _atom_sites.fract_transf_matrix[1][1] 0.013772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 400 400 ZN ZN . C 2 ZN A 1 401 401 ZN ZN . D 3 FOT A 1 410 410 FOT FOT . E 4 HOH A 1 411 1 HOH HOH . E 4 HOH A 2 412 2 HOH HOH . E 4 HOH A 3 413 3 HOH HOH . E 4 HOH A 4 414 4 HOH HOH . E 4 HOH A 5 415 5 HOH HOH . E 4 HOH A 6 416 6 HOH HOH . E 4 HOH A 7 417 7 HOH HOH . E 4 HOH A 8 418 8 HOH HOH . E 4 HOH A 9 419 9 HOH HOH . E 4 HOH A 10 420 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 FOT . . . D 3 0.876 18.73 5.759 1 84.33 ? C2 FOT 410 A 1 HETATM 2 C C6 FOT . . . D 3 0.131 20.919 5.266 1 84.77 ? C6 FOT 410 A 1 HETATM 3 C C5 FOT . . . D 3 -1.256 20.419 5.199 1 85.21 ? C5 FOT 410 A 1 HETATM 4 O O2 FOT . . . D 3 1.836 17.966 6.009 1 82.08 ? O2 FOT 410 A 1 HETATM 5 N N3 FOT . . . D 3 -0.362 18.206 5.707 1 84.05 ? N3 FOT 410 A 1 HETATM 6 N N1 FOT . . . D 3 1.11 20.044 5.547 1 85.04 ? N1 FOT 410 A 1 HETATM 7 O O6 FOT . . . D 3 0.375 22.131 5.081 1 83.78 ? O6 FOT 410 A 1 HETATM 8 F F5 FOT . . . D 3 -2.291 21.24 4.929 1 85.3 ? F5 FOT 410 A 1 HETATM 9 C C4 FOT . . . D 3 -1.434 18.967 5.439 1 84.95 ? C4 FOT 410 A 1 HETATM 10 C C41 FOT . . . D 3 -2.804 18.37 5.383 1 84.35 ? C41 FOT 410 A 1 HETATM 11 O O42 FOT . . . D 3 -3.667 18.837 6.156 1 78.88 ? O42 FOT 410 A 1 HETATM 12 O O41 FOT . . . D 3 -3.036 17.442 4.566 1 86.19 ? O41 FOT 410 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #