data_2E2X
#
_model_server_result.job_id            DjPGca7eicMojx1AU345KQ 
_model_server_result.datetime_utc      '2024-11-04 23:02:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2e2x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    2E2X 
#
_exptl.entry_id    2E2X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              720.012 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2E2X 
_cell.length_a            110.1 
_cell.length_b            110.1 
_cell.length_c            121.9 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2E2X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C39 H78 N O8 P' 
_chem_comp.formula_weight    720.012 
_chem_comp.id                PEV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PHOSPHATIDYLETHANOLAMINE;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 PEV sing 237 n n 
C48 H481 PEV sing 238 n n 
C48 H482 PEV sing 239 n n 
C48 H483 PEV sing 240 n n 
C47 C46 PEV sing 241 n n 
C47 H471 PEV sing 242 n n 
C47 H472 PEV sing 243 n n 
C46 C45 PEV sing 244 n n 
C46 H461 PEV sing 245 n n 
C46 H462 PEV sing 246 n n 
C45 C44 PEV sing 247 n n 
C45 H451 PEV sing 248 n n 
C45 H452 PEV sing 249 n n 
C44 C43 PEV sing 250 n n 
C44 H441 PEV sing 251 n n 
C44 H442 PEV sing 252 n n 
C43 C42 PEV sing 253 n n 
C43 H431 PEV sing 254 n n 
C43 H432 PEV sing 255 n n 
C42 C41 PEV sing 256 n n 
C42 H421 PEV sing 257 n n 
C42 H422 PEV sing 258 n n 
C41 C40 PEV sing 259 n n 
C41 H411 PEV sing 260 n n 
C41 H412 PEV sing 261 n n 
C40 C39 PEV sing 262 n n 
C40 H401 PEV sing 263 n n 
C40 H402 PEV sing 264 n n 
C39 C38 PEV sing 265 n n 
C39 H391 PEV sing 266 n n 
C39 H392 PEV sing 267 n n 
C38 C37 PEV sing 268 n n 
C38 H381 PEV sing 269 n n 
C38 H382 PEV sing 270 n n 
C37 C36 PEV sing 271 n n 
C37 H371 PEV sing 272 n n 
C37 H372 PEV sing 273 n n 
C36 C35 PEV sing 274 n n 
C36 H361 PEV sing 275 n n 
C36 H362 PEV sing 276 n n 
C35 C34 PEV sing 277 n n 
C35 H351 PEV sing 278 n n 
C35 H352 PEV sing 279 n n 
C34 C33 PEV sing 280 n n 
C34 H341 PEV sing 281 n n 
C34 H342 PEV sing 282 n n 
C33 C32 PEV sing 283 n n 
C33 H331 PEV sing 284 n n 
C33 H332 PEV sing 285 n n 
C32 C31 PEV sing 286 n n 
C32 H321 PEV sing 287 n n 
C32 H322 PEV sing 288 n n 
C31 O31 PEV doub 289 n n 
C31 O2 PEV sing 290 n n 
O2 C2 PEV sing 291 n n 
C2 C1 PEV sing 292 n n 
C2 C3 PEV sing 293 n n 
C2 H2 PEV sing 294 n n 
C1 O3P PEV sing 295 n n 
C1 H11 PEV sing 296 n n 
C1 H12 PEV sing 297 n n 
O3P P PEV sing 298 n n 
P O1P PEV doub 299 n n 
P O2P PEV sing 300 n n 
P O4P PEV sing 301 n n 
O2P HO2P PEV sing 302 n n 
O4P C4 PEV sing 303 n n 
C4 C5 PEV sing 304 n n 
C4 H41 PEV sing 305 n n 
C4 H42 PEV sing 306 n n 
C5 N6 PEV sing 307 n n 
C5 H51 PEV sing 308 n n 
C5 H52 PEV sing 309 n n 
N6 HN61 PEV sing 310 n n 
N6 HN62 PEV sing 311 n n 
C3 O3 PEV sing 312 n n 
C3 H31 PEV sing 313 n n 
C3 H32 PEV sing 314 n n 
O3 C11 PEV sing 315 n n 
C11 O11 PEV doub 316 n n 
C11 C12 PEV sing 317 n n 
C12 C13 PEV sing 318 n n 
C12 H121 PEV sing 319 n n 
C12 H122 PEV sing 320 n n 
C13 C14 PEV sing 321 n n 
C13 H131 PEV sing 322 n n 
C13 H132 PEV sing 323 n n 
C14 C15 PEV sing 324 n n 
C14 H141 PEV sing 325 n n 
C14 H142 PEV sing 326 n n 
C15 C16 PEV sing 327 n n 
C15 H151 PEV sing 328 n n 
C15 H152 PEV sing 329 n n 
C16 C17 PEV sing 330 n n 
C16 H161 PEV sing 331 n n 
C16 H162 PEV sing 332 n n 
C17 C18 PEV sing 333 n n 
C17 H171 PEV sing 334 n n 
C17 H172 PEV sing 335 n n 
C18 C19 PEV sing 336 n n 
C18 H181 PEV sing 337 n n 
C18 H182 PEV sing 338 n n 
C19 C20 PEV sing 339 n n 
C19 H191 PEV sing 340 n n 
C19 H192 PEV sing 341 n n 
C20 C21 PEV sing 342 n n 
C20 H201 PEV sing 343 n n 
C20 H202 PEV sing 344 n n 
C21 C22 PEV sing 345 n n 
C21 H211 PEV sing 346 n n 
C21 H212 PEV sing 347 n n 
C22 C23 PEV sing 348 n n 
C22 H221 PEV sing 349 n n 
C22 H222 PEV sing 350 n n 
C23 C24 PEV sing 351 n n 
C23 H231 PEV sing 352 n n 
C23 H232 PEV sing 353 n n 
C24 C25 PEV sing 354 n n 
C24 H241 PEV sing 355 n n 
C24 H242 PEV sing 356 n n 
C25 C26 PEV sing 357 n n 
C25 H251 PEV sing 358 n n 
C25 H252 PEV sing 359 n n 
C26 H261 PEV sing 360 n n 
C26 H262 PEV sing 361 n n 
C26 H263 PEV sing 362 n n 
#
_atom_sites.entry_id                     2E2X 
_atom_sites.fract_transf_matrix[1][1]    0.009083 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009083 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008203 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEV A 1 400 400 PEV PTY . 
D 2 PEV B 1 500 500 PEV PTY . 
E 3 POP B 1 601 601 POP POP . 
F 3 POP B 1 602 602 POP POP . 
G 4 HOH A 1 1817 4 HOH HOH . 
G 4 HOH A 2 1818 5 HOH HOH . 
G 4 HOH A 3 1819 8 HOH HOH . 
G 4 HOH A 4 1820 12 HOH HOH . 
G 4 HOH A 5 1821 14 HOH HOH . 
G 4 HOH A 6 1822 16 HOH HOH . 
G 4 HOH A 7 1823 18 HOH HOH . 
G 4 HOH A 8 1824 20 HOH HOH . 
G 4 HOH A 9 1825 22 HOH HOH . 
G 4 HOH A 10 1826 23 HOH HOH . 
G 4 HOH A 11 1827 24 HOH HOH . 
G 4 HOH A 12 1828 27 HOH HOH . 
G 4 HOH A 13 1829 29 HOH HOH . 
G 4 HOH A 14 1830 30 HOH HOH . 
G 4 HOH A 15 1831 35 HOH HOH . 
G 4 HOH A 16 1832 38 HOH HOH . 
G 4 HOH A 17 1833 40 HOH HOH . 
G 4 HOH A 18 1834 42 HOH HOH . 
G 4 HOH A 19 1835 43 HOH HOH . 
G 4 HOH A 20 1836 44 HOH HOH . 
G 4 HOH A 21 1837 46 HOH HOH . 
G 4 HOH A 22 1838 47 HOH HOH . 
G 4 HOH A 23 1839 51 HOH HOH . 
G 4 HOH A 24 1840 55 HOH HOH . 
G 4 HOH A 25 1841 58 HOH HOH . 
G 4 HOH A 26 1842 61 HOH HOH . 
G 4 HOH A 27 1843 62 HOH HOH . 
G 4 HOH A 28 1844 68 HOH HOH . 
G 4 HOH A 29 1845 70 HOH HOH . 
G 4 HOH A 30 1846 77 HOH HOH . 
H 4 HOH B 1 1817 1 HOH HOH . 
H 4 HOH B 2 1818 2 HOH HOH . 
H 4 HOH B 3 1819 3 HOH HOH . 
H 4 HOH B 4 1820 6 HOH HOH . 
H 4 HOH B 5 1821 7 HOH HOH . 
H 4 HOH B 6 1822 9 HOH HOH . 
H 4 HOH B 7 1823 10 HOH HOH . 
H 4 HOH B 8 1824 11 HOH HOH . 
H 4 HOH B 9 1825 13 HOH HOH . 
H 4 HOH B 10 1826 15 HOH HOH . 
H 4 HOH B 11 1827 17 HOH HOH . 
H 4 HOH B 12 1828 19 HOH HOH . 
H 4 HOH B 13 1829 21 HOH HOH . 
H 4 HOH B 14 1830 25 HOH HOH . 
H 4 HOH B 15 1831 26 HOH HOH . 
H 4 HOH B 16 1832 28 HOH HOH . 
H 4 HOH B 17 1833 31 HOH HOH . 
H 4 HOH B 18 1834 32 HOH HOH . 
H 4 HOH B 19 1835 33 HOH HOH . 
H 4 HOH B 20 1836 36 HOH HOH . 
H 4 HOH B 21 1837 37 HOH HOH . 
H 4 HOH B 22 1838 39 HOH HOH . 
H 4 HOH B 23 1839 41 HOH HOH . 
H 4 HOH B 24 1840 45 HOH HOH . 
H 4 HOH B 25 1841 48 HOH HOH . 
H 4 HOH B 26 1842 49 HOH HOH . 
H 4 HOH B 27 1843 50 HOH HOH . 
H 4 HOH B 28 1844 52 HOH HOH . 
H 4 HOH B 29 1845 53 HOH HOH . 
H 4 HOH B 30 1846 54 HOH HOH . 
H 4 HOH B 31 1847 60 HOH HOH . 
H 4 HOH B 32 1848 63 HOH HOH . 
H 4 HOH B 33 1849 64 HOH HOH . 
H 4 HOH B 34 1850 65 HOH HOH . 
H 4 HOH B 35 1851 66 HOH HOH . 
H 4 HOH B 36 1852 67 HOH HOH . 
H 4 HOH B 37 1853 69 HOH HOH . 
H 4 HOH B 38 1854 71 HOH HOH . 
H 4 HOH B 39 1855 72 HOH HOH . 
H 4 HOH B 40 1856 73 HOH HOH . 
H 4 HOH B 41 1857 74 HOH HOH . 
H 4 HOH B 42 1858 75 HOH HOH . 
H 4 HOH B 43 1859 76 HOH HOH . 
H 4 HOH B 44 1860 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PEV . . . D 2 -31.16 -7.124 -37.909 0 20 ? C48 PEV 500 B 1 
HETATM 2 C C47 PEV . . . D 2 -30.324 -6.862 -36.705 1 74.92 ? C47 PEV 500 B 1 
HETATM 3 C C46 PEV . . . D 2 -29.358 -7.859 -36.06 1 72.34 ? C46 PEV 500 B 1 
HETATM 4 C C45 PEV . . . D 2 -29.524 -7.878 -34.54 1 70.18 ? C45 PEV 500 B 1 
HETATM 5 C C44 PEV . . . D 2 -28.605 -8.918 -33.895 1 70.05 ? C44 PEV 500 B 1 
HETATM 6 C C43 PEV . . . D 2 -28.916 -9.039 -32.402 1 69.54 ? C43 PEV 500 B 1 
HETATM 7 C C42 PEV . . . D 2 -28.129 -10.158 -31.714 1 67.85 ? C42 PEV 500 B 1 
HETATM 8 C C41 PEV . . . D 2 -26.645 -9.817 -31.575 1 68.32 ? C41 PEV 500 B 1 
HETATM 9 C C40 PEV . . . D 2 -25.958 -10.774 -30.598 1 66.98 ? C40 PEV 500 B 1 
HETATM 10 C C39 PEV . . . D 2 -24.554 -10.277 -30.247 1 69.45 ? C39 PEV 500 B 1 
HETATM 11 C C38 PEV . . . D 2 -23.48 -10.671 -31.266 1 70.19 ? C38 PEV 500 B 1 
HETATM 12 C C37 PEV . . . D 2 -23.735 -10.183 -32.697 1 71.17 ? C37 PEV 500 B 1 
HETATM 13 C C36 PEV . . . D 2 -23.781 -8.66 -32.827 1 70.72 ? C36 PEV 500 B 1 
HETATM 14 C C35 PEV . . . D 2 -23.826 -8.225 -34.296 1 72.18 ? C35 PEV 500 B 1 
HETATM 15 C C34 PEV . . . D 2 -25.063 -8.764 -35.02 1 73.68 ? C34 PEV 500 B 1 
HETATM 16 C C33 PEV . . . D 2 -25.076 -8.395 -36.506 1 76.61 ? C33 PEV 500 B 1 
HETATM 17 C C32 PEV . . . D 2 -26.272 -9.053 -37.198 1 79.43 ? C32 PEV 500 B 1 
HETATM 18 C C31 PEV . . . D 2 -26.41 -8.678 -38.675 1 80.47 ? C31 PEV 500 B 1 
HETATM 19 O O31 PEV . . . D 2 -25.412 -8.542 -39.386 1 79.8 ? O31 PEV 500 B 1 
HETATM 20 O O2 PEV . . . D 2 -27.661 -8.542 -39.193 1 82.05 ? O2 PEV 500 B 1 
HETATM 21 C C2 PEV . . . D 2 -27.692 -8.141 -40.573 1 81.94 ? C2 PEV 500 B 1 
HETATM 22 C C1 PEV . . . D 2 -28.584 -9.069 -41.401 1 82.47 ? C1 PEV 500 B 1 
HETATM 23 O O3P PEV . . . D 2 -28.26 -10.454 -41.246 1 84.71 ? O3P PEV 500 B 1 
HETATM 24 P P PEV . . . D 2 -28.894 -11.548 -42.246 1 84.56 ? P PEV 500 B 1 
HETATM 25 O O1P PEV . . . D 2 -28.431 -12.891 -41.832 1 85.35 ? O1P PEV 500 B 1 
HETATM 26 O O2P PEV . . . D 2 -28.608 -11.101 -43.629 1 86.09 ? O2P PEV 500 B 1 
HETATM 27 O O4P PEV . . . D 2 -30.481 -11.452 -42.002 1 82.25 ? O4P PEV 500 B 1 
HETATM 28 C C4 PEV . . . D 2 -31.346 -12.29 -42.772 1 81.77 ? C4 PEV 500 B 1 
HETATM 29 C C5 PEV . . . D 2 -32.804 -12.002 -42.415 1 81.91 ? C5 PEV 500 B 1 
HETATM 30 N N6 PEV . . . D 2 -33.109 -10.597 -42.717 1 82.55 ? N6 PEV 500 B 1 
HETATM 31 C C3 PEV . . . D 2 -28.353 -6.773 -40.651 1 80.64 ? C3 PEV 500 B 1 
HETATM 32 O O3 PEV . . . D 2 -27.593 -5.73 -40.02 1 78.13 ? O3 PEV 500 B 1 
HETATM 33 C C11 PEV . . . D 2 -28.377 -4.693 -39.64 1 77.42 ? C11 PEV 500 B 1 
HETATM 34 O O11 PEV . . . D 2 -29.616 -4.772 -39.731 1 76.44 ? O11 PEV 500 B 1 
HETATM 35 C C12 PEV . . . D 2 -27.741 -3.43 -39.064 1 76.08 ? C12 PEV 500 B 1 
HETATM 36 C C13 PEV . . . D 2 -27.582 -3.454 -37.54 1 74.81 ? C13 PEV 500 B 1 
HETATM 37 C C14 PEV . . . D 2 -28.912 -3.292 -36.8 1 71.91 ? C14 PEV 500 B 1 
HETATM 38 C C15 PEV . . . D 2 -28.721 -3.161 -35.285 1 71.31 ? C15 PEV 500 B 1 
HETATM 39 C C16 PEV . . . D 2 -28.11 -4.413 -34.648 1 70.68 ? C16 PEV 500 B 1 
HETATM 40 C C17 PEV . . . D 2 -28.107 -4.316 -33.121 1 67.05 ? C17 PEV 500 B 1 
HETATM 41 C C18 PEV . . . D 2 -27.536 -5.574 -32.464 1 65.69 ? C18 PEV 500 B 1 
HETATM 42 C C19 PEV . . . D 2 -27.743 -5.516 -30.948 1 64.87 ? C19 PEV 500 B 1 
HETATM 43 C C20 PEV . . . D 2 -27.149 -6.716 -30.208 1 63.29 ? C20 PEV 500 B 1 
HETATM 44 C C21 PEV . . . D 2 -27.316 -6.541 -28.696 1 62.19 ? C21 PEV 500 B 1 
HETATM 45 C C22 PEV . . . D 2 -26.492 -7.551 -27.892 1 61.81 ? C22 PEV 500 B 1 
HETATM 46 C C23 PEV . . . D 2 -27.147 -8.928 -27.776 1 61.16 ? C23 PEV 500 B 1 
HETATM 47 C C24 PEV . . . D 2 -28.283 -8.919 -26.75 1 59.4 ? C24 PEV 500 B 1 
HETATM 48 C C25 PEV . . . D 2 -28.528 -10.076 -25.809 0 20 ? C25 PEV 500 B 1 
HETATM 49 C C26 PEV . . . D 2 -29.416 -10.827 -24.854 0 20 ? C26 PEV 500 B 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           49 
#