data_2E2X # _model_server_result.job_id tkXymRtkPojS6Cid6J-6fw _model_server_result.datetime_utc '2024-12-01 05:24:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 2E2X # _exptl.entry_id 2E2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2E2X _cell.length_a 110.1 _cell.length_b 110.1 _cell.length_c 121.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 386 n n P1 O2 POP sing 387 n n P1 O3 POP sing 388 n n P1 O POP sing 389 n n O2 HO2 POP sing 390 n n O P2 POP sing 391 n n P2 O4 POP doub 392 n n P2 O5 POP sing 393 n n P2 O6 POP sing 394 n n O5 HO5 POP sing 395 n n # _atom_sites.entry_id 2E2X _atom_sites.fract_transf_matrix[1][1] 0.009083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEV A 1 400 400 PEV PTY . D 2 PEV B 1 500 500 PEV PTY . E 3 POP B 1 601 601 POP POP . F 3 POP B 1 602 602 POP POP . G 4 HOH A 1 1817 4 HOH HOH . G 4 HOH A 2 1818 5 HOH HOH . G 4 HOH A 3 1819 8 HOH HOH . G 4 HOH A 4 1820 12 HOH HOH . G 4 HOH A 5 1821 14 HOH HOH . G 4 HOH A 6 1822 16 HOH HOH . G 4 HOH A 7 1823 18 HOH HOH . G 4 HOH A 8 1824 20 HOH HOH . G 4 HOH A 9 1825 22 HOH HOH . G 4 HOH A 10 1826 23 HOH HOH . G 4 HOH A 11 1827 24 HOH HOH . G 4 HOH A 12 1828 27 HOH HOH . G 4 HOH A 13 1829 29 HOH HOH . G 4 HOH A 14 1830 30 HOH HOH . G 4 HOH A 15 1831 35 HOH HOH . G 4 HOH A 16 1832 38 HOH HOH . G 4 HOH A 17 1833 40 HOH HOH . G 4 HOH A 18 1834 42 HOH HOH . G 4 HOH A 19 1835 43 HOH HOH . G 4 HOH A 20 1836 44 HOH HOH . G 4 HOH A 21 1837 46 HOH HOH . G 4 HOH A 22 1838 47 HOH HOH . G 4 HOH A 23 1839 51 HOH HOH . G 4 HOH A 24 1840 55 HOH HOH . G 4 HOH A 25 1841 58 HOH HOH . G 4 HOH A 26 1842 61 HOH HOH . G 4 HOH A 27 1843 62 HOH HOH . G 4 HOH A 28 1844 68 HOH HOH . G 4 HOH A 29 1845 70 HOH HOH . G 4 HOH A 30 1846 77 HOH HOH . H 4 HOH B 1 1817 1 HOH HOH . H 4 HOH B 2 1818 2 HOH HOH . H 4 HOH B 3 1819 3 HOH HOH . H 4 HOH B 4 1820 6 HOH HOH . H 4 HOH B 5 1821 7 HOH HOH . H 4 HOH B 6 1822 9 HOH HOH . H 4 HOH B 7 1823 10 HOH HOH . H 4 HOH B 8 1824 11 HOH HOH . H 4 HOH B 9 1825 13 HOH HOH . H 4 HOH B 10 1826 15 HOH HOH . H 4 HOH B 11 1827 17 HOH HOH . H 4 HOH B 12 1828 19 HOH HOH . H 4 HOH B 13 1829 21 HOH HOH . H 4 HOH B 14 1830 25 HOH HOH . H 4 HOH B 15 1831 26 HOH HOH . H 4 HOH B 16 1832 28 HOH HOH . H 4 HOH B 17 1833 31 HOH HOH . H 4 HOH B 18 1834 32 HOH HOH . H 4 HOH B 19 1835 33 HOH HOH . H 4 HOH B 20 1836 36 HOH HOH . H 4 HOH B 21 1837 37 HOH HOH . H 4 HOH B 22 1838 39 HOH HOH . H 4 HOH B 23 1839 41 HOH HOH . H 4 HOH B 24 1840 45 HOH HOH . H 4 HOH B 25 1841 48 HOH HOH . H 4 HOH B 26 1842 49 HOH HOH . H 4 HOH B 27 1843 50 HOH HOH . H 4 HOH B 28 1844 52 HOH HOH . H 4 HOH B 29 1845 53 HOH HOH . H 4 HOH B 30 1846 54 HOH HOH . H 4 HOH B 31 1847 60 HOH HOH . H 4 HOH B 32 1848 63 HOH HOH . H 4 HOH B 33 1849 64 HOH HOH . H 4 HOH B 34 1850 65 HOH HOH . H 4 HOH B 35 1851 66 HOH HOH . H 4 HOH B 36 1852 67 HOH HOH . H 4 HOH B 37 1853 69 HOH HOH . H 4 HOH B 38 1854 71 HOH HOH . H 4 HOH B 39 1855 72 HOH HOH . H 4 HOH B 40 1856 73 HOH HOH . H 4 HOH B 41 1857 74 HOH HOH . H 4 HOH B 42 1858 75 HOH HOH . H 4 HOH B 43 1859 76 HOH HOH . H 4 HOH B 44 1860 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . F 3 -35.732 -13.852 -21.734 1 100.72 ? P1 POP 602 B 1 HETATM 2 O O1 POP . . . F 3 -35.926 -13.57 -23.179 1 99.56 ? O1 POP 602 B 1 HETATM 3 O O2 POP . . . F 3 -36.904 -13.327 -20.97 1 104.17 ? O2 POP 602 B 1 HETATM 4 O O3 POP . . . F 3 -34.471 -13.217 -21.249 1 101.56 ? O3 POP 602 B 1 HETATM 5 O O POP . . . F 3 -35.652 -15.433 -21.641 1 99.98 ? O POP 602 B 1 HETATM 6 P P2 POP . . . F 3 -36.176 -16.231 -22.913 1 91.27 ? P2 POP 602 B 1 HETATM 7 O O4 POP . . . F 3 -35.793 -17.669 -22.789 1 87.78 ? O4 POP 602 B 1 HETATM 8 O O5 POP . . . F 3 -37.654 -16.076 -23.023 1 94.88 ? O5 POP 602 B 1 HETATM 9 O O6 POP . . . F 3 -35.592 -15.629 -24.139 1 83.52 ? O6 POP 602 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #