data_2E3N # _model_server_result.job_id GTYeQNJX737ACL_7TXDPig _model_server_result.datetime_utc '2024-11-23 10:32:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 2E3N # _exptl.entry_id 2E3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.635 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)HEXANAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2E3N _cell.length_a 54.423 _cell.length_b 55.195 _cell.length_c 93.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H47 N O3' _chem_comp.formula_weight 397.635 _chem_comp.id 6CM _chem_comp.mon_nstd_flag . _chem_comp.name N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)HEXANAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms C6-CERAMIDE;N-HEXANOYL-D-ERYTHRO-SPHINGOSINE;(2S,3R,4E)-2-HEXANOYLAMINOOCTADEC-4-ENE-1,3-DIOL;(2S,3R,4E)-2-HEXANOYLAMINO-1,3-OCTADEC-4-ENEDIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C19 6CM doub 1 n n C19 N2 6CM sing 2 n n C19 C20 6CM sing 3 n n N2 C2 6CM sing 4 n n N2 HN2 6CM sing 5 n n C2 C1 6CM sing 6 n n C2 C3 6CM sing 7 n n C2 H2 6CM sing 8 n n C1 O1 6CM sing 9 n n C1 H11 6CM sing 10 n n C1 H12 6CM sing 11 n n O1 HO1 6CM sing 12 n n C3 C4 6CM sing 13 n n C3 O3 6CM sing 14 n n C3 H3 6CM sing 15 n n C4 C5 6CM doub 16 e n C4 H4 6CM sing 17 n n C5 C6 6CM sing 18 n n C5 H5 6CM sing 19 n n C6 C7 6CM sing 20 n n C6 H61 6CM sing 21 n n C6 H62 6CM sing 22 n n C7 C8 6CM sing 23 n n C7 H71 6CM sing 24 n n C7 H72 6CM sing 25 n n C8 C9 6CM sing 26 n n C8 H81 6CM sing 27 n n C8 H82 6CM sing 28 n n C9 C10 6CM sing 29 n n C9 H91 6CM sing 30 n n C9 H92 6CM sing 31 n n C10 C11 6CM sing 32 n n C10 H101 6CM sing 33 n n C10 H102 6CM sing 34 n n C11 C12 6CM sing 35 n n C11 H111 6CM sing 36 n n C11 H112 6CM sing 37 n n C12 C13 6CM sing 38 n n C12 H121 6CM sing 39 n n C12 H122 6CM sing 40 n n C13 C14 6CM sing 41 n n C13 H131 6CM sing 42 n n C13 H132 6CM sing 43 n n C14 C15 6CM sing 44 n n C14 H141 6CM sing 45 n n C14 H142 6CM sing 46 n n C15 C16 6CM sing 47 n n C15 H151 6CM sing 48 n n C15 H152 6CM sing 49 n n C16 C17 6CM sing 50 n n C16 H161 6CM sing 51 n n C16 H162 6CM sing 52 n n C17 C18 6CM sing 53 n n C17 H171 6CM sing 54 n n C17 H172 6CM sing 55 n n C18 H181 6CM sing 56 n n C18 H182 6CM sing 57 n n C18 H183 6CM sing 58 n n O3 HO3 6CM sing 59 n n C20 C21 6CM sing 60 n n C20 H201 6CM sing 61 n n C20 H202 6CM sing 62 n n C21 C22 6CM sing 63 n n C21 H211 6CM sing 64 n n C21 H212 6CM sing 65 n n C22 C23 6CM sing 66 n n C22 H221 6CM sing 67 n n C22 H222 6CM sing 68 n n C23 C24 6CM sing 69 n n C23 H231 6CM sing 70 n n C23 H232 6CM sing 71 n n C24 H241 6CM sing 72 n n C24 H242 6CM sing 73 n n C24 H243 6CM sing 74 n n # _atom_sites.entry_id 2E3N _atom_sites.fract_transf_matrix[1][1] 0.018375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6CM A 1 600 600 6CM 6CM . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 24 HOH HOH . C 3 HOH A 25 625 25 HOH HOH . C 3 HOH A 26 626 26 HOH HOH . C 3 HOH A 27 627 27 HOH HOH . C 3 HOH A 28 628 28 HOH HOH . C 3 HOH A 29 629 29 HOH HOH . C 3 HOH A 30 630 30 HOH HOH . C 3 HOH A 31 631 31 HOH HOH . C 3 HOH A 32 632 32 HOH HOH . C 3 HOH A 33 633 33 HOH HOH . C 3 HOH A 34 634 34 HOH HOH . C 3 HOH A 35 635 35 HOH HOH . C 3 HOH A 36 636 36 HOH HOH . C 3 HOH A 37 637 37 HOH HOH . C 3 HOH A 38 638 38 HOH HOH . C 3 HOH A 39 639 39 HOH HOH . C 3 HOH A 40 640 40 HOH HOH . C 3 HOH A 41 641 41 HOH HOH . C 3 HOH A 42 642 42 HOH HOH . C 3 HOH A 43 643 43 HOH HOH . C 3 HOH A 44 644 44 HOH HOH . C 3 HOH A 45 645 45 HOH HOH . C 3 HOH A 46 646 46 HOH HOH . C 3 HOH A 47 647 47 HOH HOH . C 3 HOH A 48 648 48 HOH HOH . C 3 HOH A 49 649 49 HOH HOH . C 3 HOH A 50 650 50 HOH HOH . C 3 HOH A 51 651 51 HOH HOH . C 3 HOH A 52 652 52 HOH HOH . C 3 HOH A 53 653 53 HOH HOH . C 3 HOH A 54 654 54 HOH HOH . C 3 HOH A 55 655 55 HOH HOH . C 3 HOH A 56 656 56 HOH HOH . C 3 HOH A 57 657 57 HOH HOH . C 3 HOH A 58 658 58 HOH HOH . C 3 HOH A 59 659 59 HOH HOH . C 3 HOH A 60 660 60 HOH HOH . C 3 HOH A 61 661 61 HOH HOH . C 3 HOH A 62 662 62 HOH HOH . C 3 HOH A 63 663 63 HOH HOH . C 3 HOH A 64 664 64 HOH HOH . C 3 HOH A 65 665 65 HOH HOH . C 3 HOH A 66 666 66 HOH HOH . C 3 HOH A 67 667 67 HOH HOH . C 3 HOH A 68 668 68 HOH HOH . C 3 HOH A 69 669 69 HOH HOH . C 3 HOH A 70 670 70 HOH HOH . C 3 HOH A 71 671 71 HOH HOH . C 3 HOH A 72 672 72 HOH HOH . C 3 HOH A 73 673 73 HOH HOH . C 3 HOH A 74 674 74 HOH HOH . C 3 HOH A 75 675 75 HOH HOH . C 3 HOH A 76 676 76 HOH HOH . C 3 HOH A 77 677 77 HOH HOH . C 3 HOH A 78 678 78 HOH HOH . C 3 HOH A 79 679 79 HOH HOH . C 3 HOH A 80 680 80 HOH HOH . C 3 HOH A 81 681 81 HOH HOH . C 3 HOH A 82 682 82 HOH HOH . C 3 HOH A 83 683 83 HOH HOH . C 3 HOH A 84 684 84 HOH HOH . C 3 HOH A 85 685 85 HOH HOH . C 3 HOH A 86 686 86 HOH HOH . C 3 HOH A 87 687 87 HOH HOH . C 3 HOH A 88 688 88 HOH HOH . C 3 HOH A 89 689 89 HOH HOH . C 3 HOH A 90 690 90 HOH HOH . C 3 HOH A 91 691 91 HOH HOH . C 3 HOH A 92 692 92 HOH HOH . C 3 HOH A 93 693 93 HOH HOH . C 3 HOH A 94 694 94 HOH HOH . C 3 HOH A 95 695 95 HOH HOH . C 3 HOH A 96 696 96 HOH HOH . C 3 HOH A 97 697 97 HOH HOH . C 3 HOH A 98 698 98 HOH HOH . C 3 HOH A 99 699 99 HOH HOH . C 3 HOH A 100 700 100 HOH HOH . C 3 HOH A 101 701 101 HOH HOH . C 3 HOH A 102 702 102 HOH HOH . C 3 HOH A 103 703 103 HOH HOH . C 3 HOH A 104 704 104 HOH HOH . C 3 HOH A 105 705 105 HOH HOH . C 3 HOH A 106 706 106 HOH HOH . C 3 HOH A 107 707 107 HOH HOH . C 3 HOH A 108 708 108 HOH HOH . C 3 HOH A 109 709 109 HOH HOH . C 3 HOH A 110 710 110 HOH HOH . C 3 HOH A 111 711 111 HOH HOH . C 3 HOH A 112 712 112 HOH HOH . C 3 HOH A 113 713 113 HOH HOH . C 3 HOH A 114 714 114 HOH HOH . C 3 HOH A 115 715 115 HOH HOH . C 3 HOH A 116 716 116 HOH HOH . C 3 HOH A 117 717 117 HOH HOH . C 3 HOH A 118 718 118 HOH HOH . C 3 HOH A 119 719 119 HOH HOH . C 3 HOH A 120 720 120 HOH HOH . C 3 HOH A 121 721 121 HOH HOH . C 3 HOH A 122 722 122 HOH HOH . C 3 HOH A 123 723 123 HOH HOH . C 3 HOH A 124 724 124 HOH HOH . C 3 HOH A 125 725 125 HOH HOH . C 3 HOH A 126 726 126 HOH HOH . C 3 HOH A 127 727 127 HOH HOH . C 3 HOH A 128 728 128 HOH HOH . C 3 HOH A 129 729 129 HOH HOH . C 3 HOH A 130 730 130 HOH HOH . C 3 HOH A 131 731 131 HOH HOH . C 3 HOH A 132 732 132 HOH HOH . C 3 HOH A 133 733 133 HOH HOH . C 3 HOH A 134 734 134 HOH HOH . C 3 HOH A 135 735 135 HOH HOH . C 3 HOH A 136 736 136 HOH HOH . C 3 HOH A 137 737 137 HOH HOH . C 3 HOH A 138 738 138 HOH HOH . C 3 HOH A 139 739 139 HOH HOH . C 3 HOH A 140 740 140 HOH HOH . C 3 HOH A 141 741 141 HOH HOH . C 3 HOH A 142 742 142 HOH HOH . C 3 HOH A 143 743 143 HOH HOH . C 3 HOH A 144 744 144 HOH HOH . C 3 HOH A 145 745 145 HOH HOH . C 3 HOH A 146 746 146 HOH HOH . C 3 HOH A 147 747 147 HOH HOH . C 3 HOH A 148 748 148 HOH HOH . C 3 HOH A 149 749 149 HOH HOH . C 3 HOH A 150 750 150 HOH HOH . C 3 HOH A 151 751 151 HOH HOH . C 3 HOH A 152 752 152 HOH HOH . C 3 HOH A 153 753 153 HOH HOH . C 3 HOH A 154 754 154 HOH HOH . C 3 HOH A 155 755 155 HOH HOH . C 3 HOH A 156 756 156 HOH HOH . C 3 HOH A 157 757 157 HOH HOH . C 3 HOH A 158 758 158 HOH HOH . C 3 HOH A 159 759 159 HOH HOH . C 3 HOH A 160 760 160 HOH HOH . C 3 HOH A 161 761 161 HOH HOH . C 3 HOH A 162 762 162 HOH HOH . C 3 HOH A 163 763 163 HOH HOH . C 3 HOH A 164 764 164 HOH HOH . C 3 HOH A 165 765 165 HOH HOH . C 3 HOH A 166 766 166 HOH HOH . C 3 HOH A 167 767 167 HOH HOH . C 3 HOH A 168 768 168 HOH HOH . C 3 HOH A 169 769 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O19 6CM . . . B 2 9.255 27.823 -1.696 1 10.98 ? O19 6CM 600 A 1 HETATM 2 C C19 6CM . . . B 2 9.527 28.822 -2.346 1 11.55 ? C19 6CM 600 A 1 HETATM 3 N N2 6CM . . . B 2 8.868 29.979 -2.235 1 11.07 ? N2 6CM 600 A 1 HETATM 4 C C2 6CM . . . B 2 7.659 30.179 -1.43 1 11.66 ? C2 6CM 600 A 1 HETATM 5 C C1 6CM . . . B 2 7.318 31.678 -1.402 1 11.82 ? C1 6CM 600 A 1 HETATM 6 O O1 6CM . . . B 2 6.953 32.163 -2.709 1 12.34 ? O1 6CM 600 A 1 HETATM 7 C C3 6CM . . . B 2 6.481 29.277 -1.855 1 13.21 ? C3 6CM 600 A 1 HETATM 8 C C4 6CM . . . B 2 6.479 29.073 -3.366 1 13.95 ? C4 6CM 600 A 1 HETATM 9 C C5 6CM . . . B 2 6.358 27.871 -3.942 1 13.53 ? C5 6CM 600 A 1 HETATM 10 C C6 6CM . . . B 2 6.391 27.748 -5.449 1 15.31 ? C6 6CM 600 A 1 HETATM 11 C C7 6CM . . . B 2 5.035 27.398 -6.042 1 15.63 ? C7 6CM 600 A 1 HETATM 12 C C8 6CM . . . B 2 5.127 27.245 -7.56 1 18.76 ? C8 6CM 600 A 1 HETATM 13 C C9 6CM . . . B 2 3.73 27.023 -8.13 1 20.71 ? C9 6CM 600 A 1 HETATM 14 C C10 6CM . . . B 2 3.639 27.39 -9.603 1 22.92 ? C10 6CM 600 A 1 HETATM 15 C C11 6CM . . . B 2 3.568 26.101 -10.405 1 21.97 ? C11 6CM 600 A 1 HETATM 16 C C12 6CM . . . B 2 3.856 26.346 -11.882 1 23.76 ? C12 6CM 600 A 1 HETATM 17 C C13 6CM . . . B 2 4.049 25.015 -12.597 1 24.85 ? C13 6CM 600 A 1 HETATM 18 C C14 6CM . . . B 2 3.681 25.105 -14.077 1 25.43 ? C14 6CM 600 A 1 HETATM 19 C C15 6CM . . . B 2 4.728 25.854 -14.891 1 26.51 ? C15 6CM 600 A 1 HETATM 20 C C16 6CM . . . B 2 4.89 25.222 -16.266 1 27.28 ? C16 6CM 600 A 1 HETATM 21 C C17 6CM . . . B 2 6.203 25.649 -16.906 1 28.68 ? C17 6CM 600 A 1 HETATM 22 C C18 6CM . . . B 2 6.271 25.166 -18.338 1 28.2 ? C18 6CM 600 A 1 HETATM 23 O O3 6CM . . . B 2 6.572 28.016 -1.152 1 12 ? O3 6CM 600 A 1 HETATM 24 C C20 6CM . . . B 2 10.642 28.81 -3.362 1 12.35 ? C20 6CM 600 A 1 HETATM 25 C C21 6CM . . . B 2 10.045 28.301 -4.669 1 13.92 ? C21 6CM 600 A 1 HETATM 26 C C22 6CM . . . B 2 11.103 28.116 -5.745 1 14.98 ? C22 6CM 600 A 1 HETATM 27 C C23 6CM . . . B 2 10.464 27.759 -7.083 1 14.93 ? C23 6CM 600 A 1 HETATM 28 C C24 6CM . . . B 2 11.556 27.477 -8.112 1 15.19 ? C24 6CM 600 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #