data_2E3Q # _model_server_result.job_id 8JXXHYaPDuHwbm34oiZp9w _model_server_result.datetime_utc '2024-11-23 10:49:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 2E3Q # _exptl.entry_id 2E3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 565.954 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2E3Q _cell.length_a 53.196 _cell.length_b 54.783 _cell.length_c 90.314 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H71 N O3' _chem_comp.formula_weight 565.954 _chem_comp.id 18C _chem_comp.mon_nstd_flag . _chem_comp.name N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms C18-CERAMIDE;N-STEAROYL-D-ERYTHRO-SPHINGOSINE;(2S,3R,4E)-2-STEAROYLAMINOOCTADEC-4-ENE-1,3-DIOL;(2S,3R,4E)-2-STEAROYLAMINO-1,3-OCTADEC-4-ENEDIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C19 18C doub 1 n n C19 C20 18C sing 2 n n C19 N2 18C sing 3 n n N2 C2 18C sing 4 n n N2 HN2 18C sing 5 n n C2 C1 18C sing 6 n n C2 C3 18C sing 7 n n C2 H2 18C sing 8 n n C1 O1 18C sing 9 n n C1 H11 18C sing 10 n n C1 H12 18C sing 11 n n O1 HO1 18C sing 12 n n C3 O3 18C sing 13 n n C3 C4 18C sing 14 n n C3 H3 18C sing 15 n n C4 C5 18C doub 16 e n C4 H4 18C sing 17 n n C5 C6 18C sing 18 n n C5 H5 18C sing 19 n n C6 C7 18C sing 20 n n C6 H61 18C sing 21 n n C6 H62 18C sing 22 n n C7 C8 18C sing 23 n n C7 H71 18C sing 24 n n C7 H72 18C sing 25 n n C8 C9 18C sing 26 n n C8 H81 18C sing 27 n n C8 H82 18C sing 28 n n C9 C10 18C sing 29 n n C9 H91 18C sing 30 n n C9 H92 18C sing 31 n n C10 C11 18C sing 32 n n C10 H101 18C sing 33 n n C10 H102 18C sing 34 n n C11 C12 18C sing 35 n n C11 H111 18C sing 36 n n C11 H112 18C sing 37 n n C12 C13 18C sing 38 n n C12 H121 18C sing 39 n n C12 H122 18C sing 40 n n C13 C14 18C sing 41 n n C13 H131 18C sing 42 n n C13 H132 18C sing 43 n n C14 C15 18C sing 44 n n C14 H141 18C sing 45 n n C14 H142 18C sing 46 n n C15 C16 18C sing 47 n n C15 H151 18C sing 48 n n C15 H152 18C sing 49 n n C16 C17 18C sing 50 n n C16 H161 18C sing 51 n n C16 H162 18C sing 52 n n C17 C18 18C sing 53 n n C17 H171 18C sing 54 n n C17 H172 18C sing 55 n n C18 H181 18C sing 56 n n C18 H182 18C sing 57 n n C18 H183 18C sing 58 n n O3 HO3 18C sing 59 n n C20 C21 18C sing 60 n n C20 H201 18C sing 61 n n C20 H202 18C sing 62 n n C21 C22 18C sing 63 n n C21 H211 18C sing 64 n n C21 H212 18C sing 65 n n C22 C23 18C sing 66 n n C22 H221 18C sing 67 n n C22 H222 18C sing 68 n n C23 C24 18C sing 69 n n C23 H231 18C sing 70 n n C23 H232 18C sing 71 n n C24 C25 18C sing 72 n n C24 H241 18C sing 73 n n C24 H242 18C sing 74 n n C25 C26 18C sing 75 n n C25 H251 18C sing 76 n n C25 H252 18C sing 77 n n C26 C27 18C sing 78 n n C26 H261 18C sing 79 n n C26 H262 18C sing 80 n n C27 C28 18C sing 81 n n C27 H271 18C sing 82 n n C27 H272 18C sing 83 n n C28 C29 18C sing 84 n n C28 H281 18C sing 85 n n C28 H282 18C sing 86 n n C29 C30 18C sing 87 n n C29 H291 18C sing 88 n n C29 H292 18C sing 89 n n C30 C31 18C sing 90 n n C30 H301 18C sing 91 n n C30 H302 18C sing 92 n n C31 C32 18C sing 93 n n C31 H311 18C sing 94 n n C31 H312 18C sing 95 n n C32 C33 18C sing 96 n n C32 H321 18C sing 97 n n C32 H322 18C sing 98 n n C33 C34 18C sing 99 n n C33 H331 18C sing 100 n n C33 H332 18C sing 101 n n C34 C35 18C sing 102 n n C34 H341 18C sing 103 n n C34 H342 18C sing 104 n n C35 C36 18C sing 105 n n C35 H351 18C sing 106 n n C35 H352 18C sing 107 n n C36 H361 18C sing 108 n n C36 H362 18C sing 109 n n C36 H363 18C sing 110 n n # _atom_sites.entry_id 2E3Q _atom_sites.fract_transf_matrix[1][1] 0.018798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 18C A 1 600 600 18C 18C . C 3 DMS A 1 700 700 DMS DMS . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 3 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 5 HOH HOH . D 4 HOH A 6 706 6 HOH HOH . D 4 HOH A 7 707 7 HOH HOH . D 4 HOH A 8 708 8 HOH HOH . D 4 HOH A 9 709 9 HOH HOH . D 4 HOH A 10 710 10 HOH HOH . D 4 HOH A 11 711 11 HOH HOH . D 4 HOH A 12 712 12 HOH HOH . D 4 HOH A 13 713 13 HOH HOH . D 4 HOH A 14 714 14 HOH HOH . D 4 HOH A 15 715 15 HOH HOH . D 4 HOH A 16 716 16 HOH HOH . D 4 HOH A 17 717 17 HOH HOH . D 4 HOH A 18 718 18 HOH HOH . D 4 HOH A 19 719 19 HOH HOH . D 4 HOH A 20 720 20 HOH HOH . D 4 HOH A 21 721 21 HOH HOH . D 4 HOH A 22 722 22 HOH HOH . D 4 HOH A 23 723 23 HOH HOH . D 4 HOH A 24 724 24 HOH HOH . D 4 HOH A 25 725 25 HOH HOH . D 4 HOH A 26 726 26 HOH HOH . D 4 HOH A 27 727 27 HOH HOH . D 4 HOH A 28 728 28 HOH HOH . D 4 HOH A 29 729 29 HOH HOH . D 4 HOH A 30 730 30 HOH HOH . D 4 HOH A 31 731 31 HOH HOH . D 4 HOH A 32 732 32 HOH HOH . D 4 HOH A 33 733 33 HOH HOH . D 4 HOH A 34 734 34 HOH HOH . D 4 HOH A 35 735 35 HOH HOH . D 4 HOH A 36 736 36 HOH HOH . D 4 HOH A 37 737 37 HOH HOH . D 4 HOH A 38 738 38 HOH HOH . D 4 HOH A 39 739 39 HOH HOH . D 4 HOH A 40 740 40 HOH HOH . D 4 HOH A 41 741 41 HOH HOH . D 4 HOH A 42 742 42 HOH HOH . D 4 HOH A 43 743 43 HOH HOH . D 4 HOH A 44 744 44 HOH HOH . D 4 HOH A 45 745 45 HOH HOH . D 4 HOH A 46 746 46 HOH HOH . D 4 HOH A 47 747 47 HOH HOH . D 4 HOH A 48 748 48 HOH HOH . D 4 HOH A 49 749 49 HOH HOH . D 4 HOH A 50 750 50 HOH HOH . D 4 HOH A 51 751 51 HOH HOH . D 4 HOH A 52 752 52 HOH HOH . D 4 HOH A 53 753 53 HOH HOH . D 4 HOH A 54 754 54 HOH HOH . D 4 HOH A 55 755 55 HOH HOH . D 4 HOH A 56 756 56 HOH HOH . D 4 HOH A 57 757 57 HOH HOH . D 4 HOH A 58 758 58 HOH HOH . D 4 HOH A 59 759 59 HOH HOH . D 4 HOH A 60 760 60 HOH HOH . D 4 HOH A 61 761 61 HOH HOH . D 4 HOH A 62 762 62 HOH HOH . D 4 HOH A 63 763 63 HOH HOH . D 4 HOH A 64 764 64 HOH HOH . D 4 HOH A 65 765 65 HOH HOH . D 4 HOH A 66 766 66 HOH HOH . D 4 HOH A 67 767 67 HOH HOH . D 4 HOH A 68 768 68 HOH HOH . D 4 HOH A 69 769 69 HOH HOH . D 4 HOH A 70 770 70 HOH HOH . D 4 HOH A 71 771 71 HOH HOH . D 4 HOH A 72 772 72 HOH HOH . D 4 HOH A 73 773 73 HOH HOH . D 4 HOH A 74 774 74 HOH HOH . D 4 HOH A 75 775 75 HOH HOH . D 4 HOH A 76 776 76 HOH HOH . D 4 HOH A 77 777 77 HOH HOH . D 4 HOH A 78 778 78 HOH HOH . D 4 HOH A 79 779 79 HOH HOH . D 4 HOH A 80 780 80 HOH HOH . D 4 HOH A 81 781 81 HOH HOH . D 4 HOH A 82 782 82 HOH HOH . D 4 HOH A 83 783 83 HOH HOH . D 4 HOH A 84 784 84 HOH HOH . D 4 HOH A 85 785 85 HOH HOH . D 4 HOH A 86 786 86 HOH HOH . D 4 HOH A 87 787 87 HOH HOH . D 4 HOH A 88 788 88 HOH HOH . D 4 HOH A 89 789 89 HOH HOH . D 4 HOH A 90 790 90 HOH HOH . D 4 HOH A 91 791 91 HOH HOH . D 4 HOH A 92 792 92 HOH HOH . D 4 HOH A 93 793 93 HOH HOH . D 4 HOH A 94 794 94 HOH HOH . D 4 HOH A 95 795 95 HOH HOH . D 4 HOH A 96 796 96 HOH HOH . D 4 HOH A 97 797 97 HOH HOH . D 4 HOH A 98 798 98 HOH HOH . D 4 HOH A 99 799 99 HOH HOH . D 4 HOH A 100 800 100 HOH HOH . D 4 HOH A 101 801 101 HOH HOH . D 4 HOH A 102 802 102 HOH HOH . D 4 HOH A 103 803 103 HOH HOH . D 4 HOH A 104 804 104 HOH HOH . D 4 HOH A 105 805 105 HOH HOH . D 4 HOH A 106 806 106 HOH HOH . D 4 HOH A 107 807 107 HOH HOH . D 4 HOH A 108 808 108 HOH HOH . D 4 HOH A 109 809 109 HOH HOH . D 4 HOH A 110 810 110 HOH HOH . D 4 HOH A 111 811 111 HOH HOH . D 4 HOH A 112 812 112 HOH HOH . D 4 HOH A 113 813 113 HOH HOH . D 4 HOH A 114 814 114 HOH HOH . D 4 HOH A 115 815 115 HOH HOH . D 4 HOH A 116 816 116 HOH HOH . D 4 HOH A 117 817 117 HOH HOH . D 4 HOH A 118 818 118 HOH HOH . D 4 HOH A 119 819 119 HOH HOH . D 4 HOH A 120 820 120 HOH HOH . D 4 HOH A 121 821 121 HOH HOH . D 4 HOH A 122 822 122 HOH HOH . D 4 HOH A 123 823 123 HOH HOH . D 4 HOH A 124 824 124 HOH HOH . D 4 HOH A 125 825 125 HOH HOH . D 4 HOH A 126 826 126 HOH HOH . D 4 HOH A 127 827 127 HOH HOH . D 4 HOH A 128 828 128 HOH HOH . D 4 HOH A 129 829 129 HOH HOH . D 4 HOH A 130 830 130 HOH HOH . D 4 HOH A 131 831 131 HOH HOH . D 4 HOH A 132 832 132 HOH HOH . D 4 HOH A 133 833 133 HOH HOH . D 4 HOH A 134 834 134 HOH HOH . D 4 HOH A 135 835 135 HOH HOH . D 4 HOH A 136 836 136 HOH HOH . D 4 HOH A 137 837 137 HOH HOH . D 4 HOH A 138 838 138 HOH HOH . D 4 HOH A 139 839 139 HOH HOH . D 4 HOH A 140 840 140 HOH HOH . D 4 HOH A 141 841 141 HOH HOH . D 4 HOH A 142 842 142 HOH HOH . D 4 HOH A 143 843 143 HOH HOH . D 4 HOH A 144 844 144 HOH HOH . D 4 HOH A 145 845 145 HOH HOH . D 4 HOH A 146 846 146 HOH HOH . D 4 HOH A 147 847 147 HOH HOH . D 4 HOH A 148 848 148 HOH HOH . D 4 HOH A 149 849 149 HOH HOH . D 4 HOH A 150 850 150 HOH HOH . D 4 HOH A 151 851 151 HOH HOH . D 4 HOH A 152 852 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O19 18C . . . B 2 17.784 -0.775 -0.607 1 31.77 ? O19 18C 600 A 1 HETATM 2 C C19 18C . . . B 2 17.624 -1.974 -0.941 1 41.72 ? C19 18C 600 A 1 HETATM 3 N N2 18C . . . B 2 18.349 -3.029 -0.478 1 44.07 ? N2 18C 600 A 1 HETATM 4 C C2 18C . . . B 2 19.562 -2.984 0.37 1 45.48 ? C2 18C 600 A 1 HETATM 5 C C1 18C . . . B 2 19.954 -4.382 0.852 1 47.52 ? C1 18C 600 A 1 HETATM 6 O O1 18C . . . B 2 20.244 -5.257 -0.252 1 50.36 ? O1 18C 600 A 1 HETATM 7 C C3 18C . . . B 2 20.784 -2.237 -0.2 1 44.94 ? C3 18C 600 A 1 HETATM 8 C C4 18C . . . B 2 20.763 -2.017 -1.706 1 49 ? C4 18C 600 A 1 HETATM 9 C C5 18C . . . B 2 20.623 -0.789 -2.262 1 52.1 ? C5 18C 600 A 1 HETATM 10 C C6 18C . . . B 2 20.566 -0.521 -3.766 1 52.03 ? C6 18C 600 A 1 HETATM 11 C C7 18C . . . B 2 21.941 -0.245 -4.368 1 55.7 ? C7 18C 600 A 1 HETATM 12 C C8 18C . . . B 2 22.001 -0.503 -5.884 1 58.82 ? C8 18C 600 A 1 HETATM 13 C C9 18C . . . B 2 23.408 -0.275 -6.473 1 60.65 ? C9 18C 600 A 1 HETATM 14 C C10 18C . . . B 2 23.619 -0.756 -7.911 1 63.03 ? C10 18C 600 A 1 HETATM 15 C C11 18C . . . B 2 22.294 -0.971 -8.646 1 67.17 ? C11 18C 600 A 1 HETATM 16 C C12 18C . . . B 2 22.35 -2.003 -9.785 1 69.3 ? C12 18C 600 A 1 HETATM 17 C C13 18C . . . B 2 21.008 -2.125 -10.526 1 69.65 ? C13 18C 600 A 1 HETATM 18 C C14 18C . . . B 2 20.232 -3.381 -10.126 1 69.74 ? C14 18C 600 A 1 HETATM 19 C C15 18C . . . B 2 18.952 -3.543 -10.949 1 70 ? C15 18C 600 A 1 HETATM 20 C C16 18C . . . B 2 18.645 -5.012 -11.276 1 69.87 ? C16 18C 600 A 1 HETATM 21 C C17 18C . . . B 2 17.281 -5.183 -11.946 1 67.51 ? C17 18C 600 A 1 HETATM 22 C C18 18C . . . B 2 17.246 -6.468 -12.737 1 67.89 ? C18 18C 600 A 1 HETATM 23 O O3 18C . . . B 2 20.651 -1.01 0.47 1 34.26 ? O3 18C 600 A 1 HETATM 24 C C20 18C . . . B 2 16.58 -2.401 -1.959 1 40.19 ? C20 18C 600 A 1 HETATM 25 C C21 18C . . . B 2 16.638 -1.571 -3.25 1 42.25 ? C21 18C 600 A 1 HETATM 26 C C22 18C . . . B 2 16.003 -2.343 -4.419 1 42.47 ? C22 18C 600 A 1 HETATM 27 C C23 18C . . . B 2 15.889 -1.518 -5.694 1 43.35 ? C23 18C 600 A 1 HETATM 28 C C24 18C . . . B 2 17.258 -1.292 -6.319 1 45.32 ? C24 18C 600 A 1 HETATM 29 C C25 18C . . . B 2 17.127 -1.034 -7.811 1 46.01 ? C25 18C 600 A 1 HETATM 30 C C26 18C . . . B 2 17.945 0.184 -8.217 1 48.34 ? C26 18C 600 A 1 HETATM 31 C C27 18C . . . B 2 17.824 0.444 -9.712 1 48.14 ? C27 18C 600 A 1 HETATM 32 C C28 18C . . . B 2 18.585 1.686 -10.162 1 48.65 ? C28 18C 600 A 1 HETATM 33 C C29 18C . . . B 2 20.002 1.731 -9.611 1 51.69 ? C29 18C 600 A 1 HETATM 34 C C30 18C . . . B 2 21.019 1.766 -10.751 1 52.12 ? C30 18C 600 A 1 HETATM 35 C C31 18C . . . B 2 22.351 2.398 -10.31 1 51.37 ? C31 18C 600 A 1 HETATM 36 C C32 18C . . . B 2 23.603 1.557 -10.606 1 52.02 ? C32 18C 600 A 1 HETATM 37 C C33 18C . . . B 2 23.849 1.289 -12.097 1 53.59 ? C33 18C 600 A 1 HETATM 38 C C34 18C . . . B 2 23.349 -0.077 -12.571 1 52.56 ? C34 18C 600 A 1 HETATM 39 C C35 18C . . . B 2 23.644 -0.231 -14.053 1 53.55 ? C35 18C 600 A 1 HETATM 40 C C36 18C . . . B 2 22.366 -0.226 -14.878 1 54.61 ? C36 18C 600 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #