data_2E4X # _model_server_result.job_id eVWP0-uEndjQKrzNI0yMsA _model_server_result.datetime_utc '2025-07-07 20:52:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 2E4X # _exptl.entry_id 2E4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.167 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,3R)-1-AMINOCYCLOPENTANE-1,3-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.92 _cell.angle_gamma 90 _cell.entry_id 2E4X _cell.length_a 83.621 _cell.length_b 97.137 _cell.length_c 108.158 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 57 1_555 A SG CYS 75 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 216 A CYS 240 1_555 A SG CYS 503 A CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 337 A CYS 361 1_555 A SG CYS 349 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 A SG CYS 388 A CYS 412 1_555 A SG CYS 395 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 A SG CYS 485 A CYS 509 1_555 A SG CYS 504 A CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 489 A CYS 513 1_555 A SG CYS 507 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 A SG CYS 510 A CYS 534 1_555 A SG CYS 522 A CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf8 A SG CYS 525 A CYS 549 1_555 A SG CYS 538 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf9 B SG CYS 33 B CYS 57 1_555 B SG CYS 75 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 B SG CYS 216 B CYS 240 1_555 B SG CYS 503 B CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 B SG CYS 337 B CYS 361 1_555 B SG CYS 349 B CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf12 B SG CYS 388 B CYS 412 1_555 B SG CYS 395 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf13 B SG CYS 485 B CYS 509 1_555 B SG CYS 504 B CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 B SG CYS 489 B CYS 513 1_555 B SG CYS 507 B CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf15 B SG CYS 510 B CYS 534 1_555 B SG CYS 522 B CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf16 B SG CYS 525 B CYS 549 1_555 B SG CYS 538 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 185 A ASN 209 1_555 C C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 B ND2 ASN 185 B ASN 209 1_555 E C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C7 H11 N O4' _chem_comp.formula_weight 173.167 _chem_comp.id C5B _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,3R)-1-AMINOCYCLOPENTANE-1,3-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1S,3R-ACPD # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA C5B sing 70 n n N HN1 C5B sing 71 n n N HN2 C5B sing 72 n n CA C C5B sing 73 n n CA CB1 C5B sing 74 n n CA CB2 C5B sing 75 n n C O C5B doub 76 n n C OXT C5B sing 77 n n OXT HOXT C5B sing 78 n n CB1 CD C5B sing 79 n n CB1 HB11 C5B sing 80 n n CB1 HB12 C5B sing 81 n n CB2 CG2 C5B sing 82 n n CB2 HB21 C5B sing 83 n n CB2 HB22 C5B sing 84 n n CG2 CD C5B sing 85 n n CG2 HG21 C5B sing 86 n n CG2 HG22 C5B sing 87 n n CD CE C5B sing 88 n n CD HD C5B sing 89 n n CE OZ1 C5B doub 90 n n CE OZ2 C5B sing 91 n n OZ2 HOZ2 C5B sing 92 n n # _atom_sites.entry_id 2E4X _atom_sites.fract_transf_matrix[1][1] 0.011959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 801 801 NAG NAG . D 3 C5B A 1 1001 1 C5B ACP . E 2 NAG B 1 802 802 NAG NAG . F 3 C5B B 1 2001 1 C5B ACP . G 4 HOH A 1 1002 1 HOH HOH . G 4 HOH A 2 1003 3 HOH HOH . G 4 HOH A 3 1004 6 HOH HOH . G 4 HOH A 4 1005 7 HOH HOH . G 4 HOH A 5 1006 8 HOH HOH . G 4 HOH A 6 1007 9 HOH HOH . G 4 HOH A 7 1008 12 HOH HOH . G 4 HOH A 8 1009 22 HOH HOH . G 4 HOH A 9 1010 25 HOH HOH . G 4 HOH A 10 1011 26 HOH HOH . G 4 HOH A 11 1012 39 HOH HOH . G 4 HOH A 12 1013 40 HOH HOH . G 4 HOH A 13 1014 41 HOH HOH . G 4 HOH A 14 1015 42 HOH HOH . G 4 HOH A 15 1016 43 HOH HOH . G 4 HOH A 16 1017 44 HOH HOH . G 4 HOH A 17 1018 45 HOH HOH . G 4 HOH A 18 1019 46 HOH HOH . G 4 HOH A 19 1020 47 HOH HOH . G 4 HOH A 20 1021 48 HOH HOH . G 4 HOH A 21 1022 49 HOH HOH . G 4 HOH A 22 1023 51 HOH HOH . G 4 HOH A 23 1024 52 HOH HOH . G 4 HOH A 24 1025 53 HOH HOH . G 4 HOH A 25 1026 55 HOH HOH . G 4 HOH A 26 1027 56 HOH HOH . G 4 HOH A 27 1028 57 HOH HOH . G 4 HOH A 28 1029 58 HOH HOH . G 4 HOH A 29 1030 60 HOH HOH . G 4 HOH A 30 1031 61 HOH HOH . G 4 HOH A 31 1032 62 HOH HOH . G 4 HOH A 32 1033 63 HOH HOH . G 4 HOH A 33 1034 64 HOH HOH . G 4 HOH A 34 1035 65 HOH HOH . G 4 HOH A 35 1036 66 HOH HOH . G 4 HOH A 36 1037 68 HOH HOH . G 4 HOH A 37 1038 69 HOH HOH . G 4 HOH A 38 1039 70 HOH HOH . G 4 HOH A 39 1040 71 HOH HOH . G 4 HOH A 40 1041 72 HOH HOH . G 4 HOH A 41 1042 73 HOH HOH . G 4 HOH A 42 1043 74 HOH HOH . G 4 HOH A 43 1044 102 HOH HOH . G 4 HOH A 44 1045 103 HOH HOH . G 4 HOH A 45 1046 104 HOH HOH . G 4 HOH A 46 1047 105 HOH HOH . G 4 HOH A 47 1048 106 HOH HOH . G 4 HOH A 48 1049 107 HOH HOH . G 4 HOH A 49 1050 108 HOH HOH . G 4 HOH A 50 1051 110 HOH HOH . G 4 HOH A 51 1052 111 HOH HOH . G 4 HOH A 52 1053 112 HOH HOH . G 4 HOH A 53 1054 113 HOH HOH . G 4 HOH A 54 1055 114 HOH HOH . G 4 HOH A 55 1056 115 HOH HOH . G 4 HOH A 56 1057 116 HOH HOH . G 4 HOH A 57 1058 117 HOH HOH . G 4 HOH A 58 1059 118 HOH HOH . G 4 HOH A 59 1060 119 HOH HOH . G 4 HOH A 60 1061 120 HOH HOH . G 4 HOH A 61 1062 121 HOH HOH . G 4 HOH A 62 1063 122 HOH HOH . G 4 HOH A 63 1064 123 HOH HOH . G 4 HOH A 64 1065 124 HOH HOH . G 4 HOH A 65 1066 134 HOH HOH . G 4 HOH A 66 1067 135 HOH HOH . G 4 HOH A 67 1068 136 HOH HOH . G 4 HOH A 68 1069 137 HOH HOH . G 4 HOH A 69 1070 138 HOH HOH . G 4 HOH A 70 1071 139 HOH HOH . G 4 HOH A 71 1072 140 HOH HOH . G 4 HOH A 72 1073 141 HOH HOH . G 4 HOH A 73 1074 142 HOH HOH . G 4 HOH A 74 1075 143 HOH HOH . G 4 HOH A 75 1076 144 HOH HOH . G 4 HOH A 76 1077 145 HOH HOH . G 4 HOH A 77 1078 146 HOH HOH . G 4 HOH A 78 1079 147 HOH HOH . G 4 HOH A 79 1080 148 HOH HOH . G 4 HOH A 80 1081 149 HOH HOH . G 4 HOH A 81 1082 152 HOH HOH . G 4 HOH A 82 1083 158 HOH HOH . G 4 HOH A 83 1084 162 HOH HOH . G 4 HOH A 84 1085 163 HOH HOH . G 4 HOH A 85 1086 164 HOH HOH . G 4 HOH A 86 1087 165 HOH HOH . G 4 HOH A 87 1088 166 HOH HOH . G 4 HOH A 88 1089 167 HOH HOH . G 4 HOH A 89 1090 168 HOH HOH . G 4 HOH A 90 1091 169 HOH HOH . G 4 HOH A 91 1092 170 HOH HOH . G 4 HOH A 92 1093 171 HOH HOH . G 4 HOH A 93 1094 174 HOH HOH . H 4 HOH B 1 2002 2 HOH HOH . H 4 HOH B 2 2003 4 HOH HOH . H 4 HOH B 3 2004 5 HOH HOH . H 4 HOH B 4 2005 10 HOH HOH . H 4 HOH B 5 2006 11 HOH HOH . H 4 HOH B 6 2007 13 HOH HOH . H 4 HOH B 7 2008 14 HOH HOH . H 4 HOH B 8 2009 15 HOH HOH . H 4 HOH B 9 2010 16 HOH HOH . H 4 HOH B 10 2011 17 HOH HOH . H 4 HOH B 11 2012 18 HOH HOH . H 4 HOH B 12 2013 19 HOH HOH . H 4 HOH B 13 2014 20 HOH HOH . H 4 HOH B 14 2015 21 HOH HOH . H 4 HOH B 15 2016 23 HOH HOH . H 4 HOH B 16 2017 24 HOH HOH . H 4 HOH B 17 2018 27 HOH HOH . H 4 HOH B 18 2019 28 HOH HOH . H 4 HOH B 19 2020 29 HOH HOH . H 4 HOH B 20 2021 30 HOH HOH . H 4 HOH B 21 2022 31 HOH HOH . H 4 HOH B 22 2023 32 HOH HOH . H 4 HOH B 23 2024 33 HOH HOH . H 4 HOH B 24 2025 34 HOH HOH . H 4 HOH B 25 2026 35 HOH HOH . H 4 HOH B 26 2027 36 HOH HOH . H 4 HOH B 27 2028 37 HOH HOH . H 4 HOH B 28 2029 54 HOH HOH . H 4 HOH B 29 2030 59 HOH HOH . H 4 HOH B 30 2031 67 HOH HOH . H 4 HOH B 31 2032 75 HOH HOH . H 4 HOH B 32 2033 76 HOH HOH . H 4 HOH B 33 2034 77 HOH HOH . H 4 HOH B 34 2035 78 HOH HOH . H 4 HOH B 35 2036 79 HOH HOH . H 4 HOH B 36 2037 80 HOH HOH . H 4 HOH B 37 2038 81 HOH HOH . H 4 HOH B 38 2039 82 HOH HOH . H 4 HOH B 39 2040 83 HOH HOH . H 4 HOH B 40 2041 84 HOH HOH . H 4 HOH B 41 2042 85 HOH HOH . H 4 HOH B 42 2043 86 HOH HOH . H 4 HOH B 43 2044 87 HOH HOH . H 4 HOH B 44 2045 88 HOH HOH . H 4 HOH B 45 2046 89 HOH HOH . H 4 HOH B 46 2047 90 HOH HOH . H 4 HOH B 47 2048 91 HOH HOH . H 4 HOH B 48 2049 92 HOH HOH . H 4 HOH B 49 2050 93 HOH HOH . H 4 HOH B 50 2051 94 HOH HOH . H 4 HOH B 51 2052 95 HOH HOH . H 4 HOH B 52 2053 96 HOH HOH . H 4 HOH B 53 2054 97 HOH HOH . H 4 HOH B 54 2055 99 HOH HOH . H 4 HOH B 55 2056 100 HOH HOH . H 4 HOH B 56 2057 101 HOH HOH . H 4 HOH B 57 2058 109 HOH HOH . H 4 HOH B 58 2059 125 HOH HOH . H 4 HOH B 59 2060 126 HOH HOH . H 4 HOH B 60 2061 127 HOH HOH . H 4 HOH B 61 2062 128 HOH HOH . H 4 HOH B 62 2063 129 HOH HOH . H 4 HOH B 63 2064 130 HOH HOH . H 4 HOH B 64 2065 131 HOH HOH . H 4 HOH B 65 2066 132 HOH HOH . H 4 HOH B 66 2067 133 HOH HOH . H 4 HOH B 67 2068 150 HOH HOH . H 4 HOH B 68 2069 151 HOH HOH . H 4 HOH B 69 2070 153 HOH HOH . H 4 HOH B 70 2071 154 HOH HOH . H 4 HOH B 71 2072 155 HOH HOH . H 4 HOH B 72 2073 156 HOH HOH . H 4 HOH B 73 2074 157 HOH HOH . H 4 HOH B 74 2075 159 HOH HOH . H 4 HOH B 75 2076 160 HOH HOH . H 4 HOH B 76 2077 161 HOH HOH . H 4 HOH B 77 2078 172 HOH HOH . H 4 HOH B 78 2079 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N C5B . . . D 3 19.136 -5.747 50.682 1 47.03 ? N C5B 1001 A 1 HETATM 2 C CA C5B . . . D 3 20.3 -4.826 50.628 1 45.99 ? CA C5B 1001 A 1 HETATM 3 C C C5B . . . D 3 20.34 -3.961 49.365 1 46.43 ? C C5B 1001 A 1 HETATM 4 O O C5B . . . D 3 19.655 -4.284 48.372 1 46.66 ? O C5B 1001 A 1 HETATM 5 O OXT C5B . . . D 3 21.063 -2.948 49.341 1 47.45 ? OXT C5B 1001 A 1 HETATM 6 C CB1 C5B . . . D 3 21.53 -5.71 50.742 1 46.98 ? CB1 C5B 1001 A 1 HETATM 7 C CB2 C5B . . . D 3 20.215 -3.953 51.877 1 45.28 ? CB2 C5B 1001 A 1 HETATM 8 C CG2 C5B . . . D 3 21.369 -4.419 52.772 1 46.31 ? CG2 C5B 1001 A 1 HETATM 9 C CD C5B . . . D 3 22.373 -5.027 51.803 1 49.37 ? CD C5B 1001 A 1 HETATM 10 C CE C5B . . . D 3 23.275 -6.033 52.495 1 50.65 ? CE C5B 1001 A 1 HETATM 11 O OZ1 C5B . . . D 3 24.472 -5.734 52.704 1 53.08 ? OZ1 C5B 1001 A 1 HETATM 12 O OZ2 C5B . . . D 3 22.811 -7.141 52.839 1 51.43 ? OZ2 C5B 1001 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 99 _model_server_stats.create_model_time_ms 99 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #