data_2E4Y # _model_server_result.job_id JNVyOphHXnmwtlDy0JA5lQ _model_server_result.datetime_utc '2025-07-07 23:37:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 2E4Y # _exptl.entry_id 2E4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.155 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4R)-4-aminopyrrolidine-2,4-dicarboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.28 _cell.angle_gamma 90 _cell.entry_id 2E4Y _cell.length_a 84.393 _cell.length_b 91.799 _cell.length_c 112.972 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 57 1_555 A SG CYS 75 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 216 A CYS 240 1_555 A SG CYS 503 A CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 337 A CYS 361 1_555 A SG CYS 349 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf4 A SG CYS 388 A CYS 412 1_555 A SG CYS 395 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf5 A SG CYS 485 A CYS 509 1_555 A SG CYS 504 A CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 489 A CYS 513 1_555 A SG CYS 507 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf7 A SG CYS 510 A CYS 534 1_555 A SG CYS 522 A CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf8 A SG CYS 525 A CYS 549 1_555 A SG CYS 538 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 B SG CYS 33 B CYS 57 1_555 B SG CYS 75 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 337 B CYS 361 1_555 B SG CYS 349 B CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf11 B SG CYS 388 B CYS 412 1_555 B SG CYS 395 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? covale ? covale1 A ND2 ASN 185 A ASN 209 1_555 C C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C6 H10 N2 O4' _chem_comp.formula_weight 174.155 _chem_comp.id 52A _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4R)-4-aminopyrrolidine-2,4-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2R,4R-APDC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 52A sing 1 n n CA C 52A sing 2 n n CA CB1 52A sing 3 n n CA CB2 52A sing 4 n n C O 52A doub 5 n n C OXT 52A sing 6 n n CB1 CG1 52A sing 7 n n CB2 NG2 52A sing 8 n n CG1 NG2 52A sing 9 n n CG1 CD 52A sing 10 n n CD OE1 52A doub 11 n n CD OE2 52A sing 12 n n N HN1 52A sing 13 n n N HN2 52A sing 14 n n OXT HOXT 52A sing 15 n n CB1 HB11 52A sing 16 n n CB1 HB12 52A sing 17 n n CB2 HB21 52A sing 18 n n CB2 HB22 52A sing 19 n n CG1 HG1 52A sing 20 n n NG2 HNG2 52A sing 21 n n OE2 HOE2 52A sing 22 n n # _atom_sites.entry_id 2E4Y _atom_sites.fract_transf_matrix[1][1] 0.011849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000472 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 801 801 NAG NAG . D 3 52A A 1 1001 1 52A APD . E 3 52A B 1 2001 1 52A APD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 52A . . . E 3 16.106 20.778 11.483 1 94.34 ? N 52A 2001 B 1 HETATM 2 C CA 52A . . . E 3 17.482 20.334 11.665 1 94.34 ? CA 52A 2001 B 1 HETATM 3 C C 52A . . . E 3 17.604 19.797 13.084 1 94.34 ? C 52A 2001 B 1 HETATM 4 O O 52A . . . E 3 18.31 18.788 13.308 1 94.34 ? O 52A 2001 B 1 HETATM 5 O OXT 52A . . . E 3 16.993 20.366 14.009 1 94.34 ? OXT 52A 2001 B 1 HETATM 6 C CB1 52A . . . E 3 18.458 21.484 11.435 1 94.34 ? CB1 52A 2001 B 1 HETATM 7 C CB2 52A . . . E 3 17.891 19.268 10.637 1 94.34 ? CB2 52A 2001 B 1 HETATM 8 C CG1 52A . . . E 3 19.698 20.745 10.948 1 94.34 ? CG1 52A 2001 B 1 HETATM 9 N NG2 52A . . . E 3 19.227 19.632 10.132 1 94.34 ? NG2 52A 2001 B 1 HETATM 10 C CD 52A . . . E 3 20.563 21.679 10.109 1 94.34 ? CD 52A 2001 B 1 HETATM 11 O OE1 52A . . . E 3 21.695 21.291 9.732 1 94.34 ? OE1 52A 2001 B 1 HETATM 12 O OE2 52A . . . E 3 20.126 22.819 9.809 1 94.34 ? OE2 52A 2001 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #